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gnu: python-flint: Update to 0.5.0 and build with flint@3.

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* gnu/packages/patches/python-flint-includes.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister file.
* gnu/packages/algebra.scm (python-flint): Update to 0.5.0.
[source]: Drop patch.
[inputs]: Drop arb.
[native-inputs]: Use python-cython-3.

Change-Id: I5fa9b201efff76e16f957aee0ebcd453ea823e69
This commit is contained in:
Andreas Enge 2024-01-25 14:41:30 +01:00
parent f027a6c22c
commit ff9d8420cf
No known key found for this signature in database
GPG Key ID: F7D5C9BF765C61E3
3 changed files with 4 additions and 137 deletions
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1
gnu/local.mk
View File

@ -1910,7 +1910,6 @@ dist_patch_DATA = \
%D%/packages/patches/python-piexif-fix-tests-with-pillow-7.2.patch \
%D%/packages/patches/python-pillow-CVE-2022-45199.patch \
%D%/packages/patches/python-pyfakefs-remove-bad-test.patch \
%D%/packages/patches/python-flint-includes.patch \
%D%/packages/patches/python-libxml2-utf8.patch \
%D%/packages/patches/python-memcached-syntax-warnings.patch \
%D%/packages/patches/python-mox3-python3.6-compat.patch \

9
gnu/packages/algebra.scm
View File

@ -494,7 +494,7 @@ real and complex numbers, with automatic, rigorous error control.")
(define-public python-flint
(package
(name "python-flint")
(version "0.3.0")
(version "0.5.0")
(source (origin
(method git-fetch)
(uri (git-reference
@ -503,15 +503,14 @@ real and complex numbers, with automatic, rigorous error control.")
(file-name (git-file-name name version))
(sha256
(base32
"1v0anazbj1cfi68nl2j6dbd31kgkc1563xmr0zk5xk3xj78569pw"))
(patches (search-patches "python-flint-includes.patch"))))
"10370kqik6q6vdqrqv3gbznsyaxbgqb3rbrff4alpw0sqr5s07c7"))))
(build-system python-build-system)
(native-inputs
(list python-cython))
(list python-cython-3))
(propagated-inputs
(list python-numpy))
(inputs
(list arb flint))
(list flint))
(synopsis "Python module wrapping ARB and FLINT")
(description
"Python-flint is a Python extension module wrapping FLINT

131
gnu/packages/patches/python-flint-includes.patch
View File

@ -1,131 +0,0 @@
The following patch, authored by Andreas Enge, looks for the flint include
files in the correct subdirectory.
diff -u -r python-flint-old/src/flint.pxd python-flint-new/src/flint.pxd
--- python-flint-old/src/flint.pxd 2019-03-19 10:26:11.055748626 +0100
+++ python-flint-new/src/flint.pxd 2019-03-19 10:35:23.269341203 +0100
@@ -27,7 +27,7 @@
ctypedef long fmpz_struct
-cdef extern from "flint.h":
+cdef extern from "flint/flint.h":
ctypedef void * flint_rand_t
void flint_randinit(flint_rand_t state)
void flint_randclear(flint_rand_t state)
@@ -35,7 +35,7 @@
long flint_get_num_threads()
void flint_cleanup()
-cdef extern from "nmod_vec.h":
+cdef extern from "flint/nmod_vec.h":
ctypedef struct nmod_t:
mp_limb_t n
mp_limb_t ninv
@@ -47,7 +47,7 @@
mp_limb_t nmod_mul(mp_limb_t a, mp_limb_t b, nmod_t mod)
mp_limb_t nmod_div(mp_limb_t a, mp_limb_t b, nmod_t mod)
-cdef extern from "nmod_poly.h":
+cdef extern from "flint/nmod_poly.h":
ctypedef struct nmod_poly_struct:
mp_ptr coeffs
long alloc
@@ -129,7 +129,7 @@
void nmod_poly_factor_init(nmod_poly_factor_t fac)
void nmod_poly_factor_clear(nmod_poly_factor_t fac)
-cdef extern from "nmod_mat.h":
+cdef extern from "flint/nmod_mat.h":
ctypedef struct nmod_mat_struct:
mp_limb_t * entries
long r
@@ -178,7 +178,7 @@
long nmod_mat_rref(nmod_mat_t A)
long nmod_mat_nullspace(nmod_mat_t X, nmod_mat_t A)
-cdef extern from "fmpz.h":
+cdef extern from "flint/fmpz.h":
ctypedef fmpz_struct fmpz_t[1]
int COEFF_IS_MPZ(fmpz_struct v)
void fmpz_init(fmpz_t op)
@@ -268,7 +268,7 @@
void fmpz_rfac_uiui(fmpz_t r, ulong x, ulong n)
void fmpz_primorial(fmpz_t res, ulong n)
-cdef extern from "fmpz_factor.h":
+cdef extern from "flint/fmpz_factor.h":
ctypedef struct fmpz_factor_struct:
int sign
fmpz_struct * p
@@ -280,7 +280,7 @@
void fmpz_factor_clear(fmpz_factor_t factor)
void fmpz_factor(fmpz_factor_t factor, fmpz_t n)
-cdef extern from "fmpz_poly.h":
+cdef extern from "flint/fmpz_poly.h":
ctypedef struct fmpz_poly_struct:
fmpz_struct * coeffs
long alloc
@@ -390,14 +390,14 @@
void fmpz_poly_cos_minpoly(fmpz_poly_t, ulong)
void fmpz_poly_swinnerton_dyer(fmpz_poly_t, ulong)
-cdef extern from "fmpz_poly_factor.h":
+cdef extern from "flint/fmpz_poly_factor.h":
void fmpz_poly_factor_init(fmpz_poly_factor_t fac)
void fmpz_poly_factor_clear(fmpz_poly_factor_t fac)
void fmpz_poly_factor_zassenhaus(fmpz_poly_factor_t fac, fmpz_poly_t G)
void fmpz_poly_factor(fmpz_poly_factor_t fac, fmpz_poly_t G)
void fmpz_poly_factor_squarefree(fmpz_poly_factor_t fac, fmpz_poly_t G)
-cdef extern from "fmpz_mat.h":
+cdef extern from "flint/fmpz_mat.h":
ctypedef struct fmpz_mat_struct:
fmpz_struct * entries
long r
@@ -448,7 +448,7 @@
void fmpz_mat_snf(fmpz_mat_t S, const fmpz_mat_t A)
int fmpz_mat_is_in_snf(const fmpz_mat_t A)
-cdef extern from "fmpz_lll.h":
+cdef extern from "flint/fmpz_lll.h":
ctypedef struct fmpz_lll_struct:
double delta
double eta
@@ -461,7 +461,7 @@
void fmpz_lll(fmpz_mat_t B, fmpz_mat_t U, const fmpz_lll_t fl)
-cdef extern from "fmpq.h":
+cdef extern from "flint/fmpq.h":
ctypedef struct fmpq_struct:
fmpz_struct num
fmpz_struct den
@@ -506,7 +506,7 @@
void fmpq_next_signed_minimal(fmpq_t res, fmpq_t x)
void fmpq_harmonic_ui(fmpq_t res, ulong n)
-cdef extern from "fmpq_poly.h":
+cdef extern from "flint/fmpq_poly.h":
ctypedef struct fmpq_poly_struct:
fmpz_struct * coeffs
fmpz_t den
@@ -620,7 +620,7 @@
void fmpq_poly_compose_series(fmpq_poly_t res, fmpq_poly_t poly1, fmpq_poly_t poly2, long n)
void fmpq_poly_revert_series(fmpq_poly_t res, fmpq_poly_t poly1, long n)
-cdef extern from "fmpq_mat.h":
+cdef extern from "flint/fmpq_mat.h":
ctypedef struct fmpq_mat_struct:
fmpq_struct * entries
long r
@@ -672,7 +672,7 @@
long fmpq_mat_rref(fmpq_mat_t B, fmpq_mat_t A)
void fmpq_mat_transpose(fmpq_mat_t B, fmpq_mat_t A)
-cdef extern from "arith.h":
+cdef extern from "flint/arith.h":
void arith_number_of_partitions(fmpz_t res, ulong n)
int arith_moebius_mu(fmpz_t n)
void arith_divisor_sigma(fmpz_t v, fmpz_t n, ulong k)