Commit Graph

1848 Commits

Author SHA1 Message Date
Ricardo Wurmus
fdb9a02a68
gnu: r-s4vectors: Update to 0.30.2.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.2.
2021-11-03 21:07:30 +00:00
Ricardo Wurmus
81dad9f62d
gnu: r-multidataset: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.20.2.
2021-11-03 21:07:30 +00:00
Ricardo Wurmus
c00ca981a9
gnu: r-motifstack: Update to 1.36.1.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.36.1.
2021-11-03 21:07:30 +00:00
Ricardo Wurmus
a6f270b7af
gnu: r-enrichplot: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.3.
2021-11-03 21:07:30 +00:00
Ricardo Wurmus
11cf6d399c
gnu: r-dose: Update to 3.18.3.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.3.
2021-11-03 21:07:29 +00:00
Ricardo Wurmus
b4888a5581
gnu: r-genefilter: Update to 1.74.1.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.74.1.
2021-11-03 21:07:29 +00:00
Ricardo Wurmus
218912f6ad
gnu: r-annotationhub: Update to 3.0.2.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.2.
2021-11-03 21:07:29 +00:00
Ricardo Wurmus
0bb9c9a723
gnu: r-annotationforge: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.34.1.
2021-11-03 21:07:29 +00:00
Ricardo Wurmus
3c3d7f0410
gnu: r-biocthis: Set HOME variable.
* gnu/packages/bioconductor.scm (r-biocthis)[arguments]: Add build phase
'set-HOME.
2021-11-03 21:07:29 +00:00
Mădălin Ionel Patrașcu
4f9f2539f3
gnu: Add r-zellkonverter.
* gnu/packages/bioconductor.scm (r-zellkonverter): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-11-03 21:07:29 +00:00
Ricardo Wurmus
095b76c254
gnu: r-interval: Update to 1.1-0.8.
* gnu/packages/bioconductor.scm (r-interval): Update to 1.1-0.8.
2021-11-03 21:07:15 +00:00
Ricardo Wurmus
ac327cc7fc
gnu: Add r-fcscan.
* gnu/packages/bioconductor.scm (r-fcscan): New variable.
2021-10-21 10:59:16 +00:00
Ricardo Wurmus
b28cd884b8
gnu: r-gdsfmt: Adjust bad substitution.
* gnu/packages/bioconductor.scm (r-gdsfmt)[source]: Include beginning-of-line
anchor in substitution regular expression.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
0398a89fa1
gnu: r-delayedmatrixstats: Update to 1.14.3.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.3.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
425c53b568
gnu: r-s4vectors: Update to 0.30.1.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.1.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
c935b25a9e
gnu: r-biocpkgtools: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.2.
[propagated-inputs]: Remove r-rex.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
3683f7f0a8
gnu: r-timeseriesexperiment: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.10.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
74e2186731
gnu: r-gdsfmt: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.28.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
494b7c4eca
gnu: r-cicero: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.10.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
3278daa726
gnu: r-zinbwave: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.14.2.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
a88e7abf2f
gnu: r-clusterprofiler: Update to 4.0.5.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.5.
[propagated-inputs]: Remove r-rvcheck; add r-yulab-utils.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
1359fc7fbd
gnu: r-ggtree: Update to 3.0.4.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.4.
[propagated-inputs]: Remove r-rvcheck; add r-ggfun and r-yulab-utils.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
538618552b
gnu: r-matrixgenerics: Update to 1.4.3.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.3.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
ce23a074f0
gnu: r-chippeakanno: Update to 3.26.4.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.4.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
4fb187b79e
gnu: r-diffbind: Update to 3.2.7.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.7.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
43ac163bdf
gnu: r-genomicfeatures: Update to 1.44.2.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.2.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
7c6046a6db
gnu: r-genomeinfodb: Update to 1.28.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.4.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
0ac7b8b6ad
gnu: r-edger: Update to 3.34.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.1.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
77a5fdd51c
gnu: r-biocparallel: Update to 1.26.2.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.2.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
e8aab58d0c
gnu: r-affxparser: Update to 1.64.1.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.1.
2021-09-30 12:39:47 +02:00
Tobias Geerinckx-Rice
708fe49523
gnu: r-simplifyenrichment: Fix typo in description.
* gnu/packages/bioconductor.scm (r-simplifyenrichment)[description]:
Fix ‘implemeted’ typo.
2021-09-28 22:00:48 +02:00
Ricardo Wurmus
ca962b5ba9
gnu: Add r-omnipathr.
* gnu/packages/bioconductor.scm (r-omnipathr): New variable.
2021-09-23 14:46:49 +02:00
zimoun
8e54aafa39
gnu: Add r-simplifyenrichment.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): New variable.
2021-09-20 17:23:15 +02:00
Ricardo Wurmus
5cfe5ddece
gnu: Add r-biscuiteer.
* gnu/packages/bioconductor.scm (r-biscuiteer): New variable.
2021-09-07 14:47:57 +02:00
Ricardo Wurmus
f051f68ca2
gnu: Add r-dmrseq.
* gnu/packages/bioconductor.scm (r-dmrseq): New variable.
2021-09-07 14:47:57 +02:00
Ricardo Wurmus
0d1990b986
gnu: Add r-bsseq.
* gnu/packages/bioconductor.scm (r-bsseq): New variable.
2021-09-07 14:47:57 +02:00
Ricardo Wurmus
b63fb6a2e6
gnu: Add r-biotmle.
* gnu/packages/bioconductor.scm (r-biotmle): New variable.
2021-09-07 14:47:57 +02:00
Ricardo Wurmus
ccc1b9e5a1
gnu: Add r-biotip.
* gnu/packages/bioconductor.scm (r-biotip): New variable.
2021-09-07 14:47:57 +02:00
Ricardo Wurmus
32d8a7d3ba
gnu: Add r-bioqc.
* gnu/packages/bioconductor.scm (r-bioqc): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
d5f792ac10
gnu: Add r-bionetstat.
* gnu/packages/bioconductor.scm (r-bionetstat): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
35526b62a8
gnu: Add r-bionet.
* gnu/packages/bioconductor.scm (r-bionet): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
4f6b3821eb
gnu: Add r-bionero.
* gnu/packages/bioconductor.scm (r-bionero): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
2794024dc2
gnu: Add r-biomvrcns.
* gnu/packages/bioconductor.scm (r-biomvrcns): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
9cb08ead85
gnu: Add r-biomvcclass.
* gnu/packages/bioconductor.scm (r-biomvcclass): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
e10a3bc0ca
gnu: Add r-mvcclass.
* gnu/packages/bioconductor.scm (r-mvcclass): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
0780bcc0c0
gnu: Add r-biscuiteerdata.
* gnu/packages/bioconductor.scm (r-biscuiteerdata): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
bcbd8b7921
gnu: Add r-mus-musculus.
* gnu/packages/bioconductor.scm (r-mus-musculus): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
aed1504837
gnu: Add r-biomformat.
* gnu/packages/bioconductor.scm (r-biomformat): New variable.
2021-09-07 12:16:47 +02:00
Ricardo Wurmus
48e300bd3f
gnu: Add r-biodb.
* gnu/packages/bioconductor.scm (r-biodb): New variable.
2021-09-07 12:16:41 +02:00
Ricardo Wurmus
2c8e3595e3
gnu: Add r-biocdockermanager.
* gnu/packages/bioconductor.scm (r-biocdockermanager): New variable.
2021-09-07 12:16:33 +02:00