gnu: Add r-biodb.
* gnu/packages/bioconductor.scm (r-biodb): New variable.
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@ -14074,6 +14074,50 @@ the BiocDockerManager package to install and manage Docker images provided by
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the Bioconductor project.")
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(license license:artistic2.0)))
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(define-public r-biodb
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(package
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(name "r-biodb")
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(version "1.0.4")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "biodb" version))
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(sha256
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(base32
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"1apnbr5p619nsrhd2drm6arj69sw0wijv8ap7dfrndqkffrpbfmx"))))
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(properties `((upstream-name . "biodb")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-chk" ,r-chk)
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("r-jsonlite" ,r-jsonlite)
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("r-lgr" ,r-lgr)
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("r-lifecycle" ,r-lifecycle)
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("r-openssl" ,r-openssl)
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("r-plyr" ,r-plyr)
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("r-progress" ,r-progress)
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("r-r6" ,r-r6)
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("r-rappdirs" ,r-rappdirs)
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("r-rcpp" ,r-rcpp)
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("r-rcurl" ,r-rcurl)
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("r-rsqlite" ,r-rsqlite)
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("r-stringr" ,r-stringr)
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("r-testthat" ,r-testthat)
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("r-withr" ,r-withr)
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("r-xml" ,r-xml)
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("r-yaml" ,r-yaml)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/biodb")
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(synopsis "Library for connecting to chemical and biological databases")
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(description
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"The biodb package provides access to standard remote chemical and
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biological databases (ChEBI, KEGG, HMDB, ...), as well as to in-house local
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database files (CSV, SQLite), with easy retrieval of entries, access to web
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services, search of compounds by mass and/or name, and mass spectra matching
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for LCMS and MSMS. Its architecture as a development framework facilitates
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the development of new database connectors for local projects or inside
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separate published packages.")
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(license license:agpl3+)))
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(define-public r-tximeta
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(package
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(name "r-tximeta")
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