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Author SHA1 Message Date
Ludovic Courtès
9daf046c5d
inferior: Add 'inferior-package-derivation'. 
* guix/inferior.scm (read-inferior-response)
(send-inferior-request): New procedures.
(inferior-eval): Rewrite in terms of these.
(proxy, inferior-package-derivation, inferior-package->derivation)
(package-compiler): New procedures.
* tests/inferior.scm ("inferior-package-derivation"): New test.
 2018-09-21 17:04:37 +02:00
pimi
7e27393f82
gnu: Add r-pore. 
* gnu/packages/bioinformatics.scm (r-pore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-21 17:04:37 +02:00
Paul Garlick
45201bf245
gnu: hdf5-parallel-openmpi: Really enable parallel build. 
This fix ensures that the H5_HAVE_PARALLEL identifier is correctly set
in the file H5pubconf.h.

* gnu/packages/maths.scm (hdf5-parallel-openmpi)[arguments]: Add
the "--enable-parallel" flag to the list of configure flags.  Remove
the incompatible "--enable-cxx" flag.  Add 'mpi-setup' phase.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-09-21 17:04:37 +02:00
Paul Garlick
b0d1e60fff
gnu: hdf5: Allow for absence of utility script. 
* gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'split'
phase to check for existence of h5fc script.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-21 17:04:37 +02:00
Danny Milosavljevic
10e066f410
gnu: rust: Remove unused "localstatedir" setting. 
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Remove
unused "localstatedir" setting.
 2018-09-21 15:21:24 +02:00
Tobias Geerinckx-Rice
118a084531
gnu: libfilezilla: Update to 0.13.2. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.13.2.
[source]: Use HTTPS.
 2018-09-21 15:04:29 +02:00
Tobias Geerinckx-Rice
41e551b2d3
gnu: python-pyparsing: Update home page. 
* gnu/packages/python.scm (python-pyparsing)[home-page]: Update.
 2018-09-21 15:03:49 +02:00
Tobias Geerinckx-Rice
eacb5dc487
gnu: emacs-mu4e-conversation: Fix typo in description. 
* gnu/packages/emacs.scm (emacs-mu4e-conversation)[description]:
Fix 'correspondant' typo.
 2018-09-21 15:03:49 +02:00
Tobias Geerinckx-Rice
93ab9a5d76
gnu: kodi: Use INVOKE. 
* gnu/packages/kodi.scm (kodi)[arguments]: Substitute INVOKE for SYSTEM*.
 2018-09-21 15:03:48 +02:00
Tobias Geerinckx-Rice
2aa137e261
gnu: crossguid: Use INVOKE. 
* gnu/packages/kodi.scm (crossguid)[arguments]: Substitute INVOKE for SYSTEM*.
 2018-09-21 15:03:48 +02:00
Mark H Weaver
e67ad5532f
gnu: icecat: Update to 60.2.0-gnu1 (pre-release). 
* gnu/packages/gnuzilla.scm (icecat): Update to 60.2.0-gnu1.
[source]: Download pre-release from alpha.gnu.org.  Remove obsolete patches.
Comment out the code to delete the bundled copies of libevent, cairo,
harfbuzz, and graphite2.
[inputs]: Use the latest ffmpeg.  Comment out libevent, cairo, harfbuzz, and
graphite2.
[native-inputs]: Add rust and cargo.
[arguments]: Remove --enable-gio and --disable-gnomeui.  Add --disable-stylo.
Comment out --with-system-{libevent,harfbuzz,graphite2}, --enable-system-cairo.
Import %cargo-build-system-modules.  Add 'patch-cargo-checksums' phase.
* gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch,
gnu/packages/patches/icecat-bug-1413868-pt1.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-09-21 07:16:02 -04:00
Mark H Weaver
c5327efb97
gnu: libvpx: Add upstream security fix. 
* gnu/packages/patches/libvpx-use-after-free-in-postproc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (libvpx)[source]: Add patch.
 2018-09-21 07:15:59 -04:00
Tobias Geerinckx-Rice
6569549dfa
gnu: python-paramiko: Update to 2.4.2 [security fixes]. 
* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.4.2.
 2018-09-21 13:18:42 +02:00
Tobias Geerinckx-Rice
101ad242be
gnu: python-paramiko: Use HTTPS home page. 
* gnu/packages/python-crypto.scm (python-paramiko)[home-page]: Use HTTPS.
 2018-09-21 13:18:42 +02:00
Tobias Geerinckx-Rice
a1d6610e84
gnu: python-rencode: Update to 1.0.5. 
* gnu/packages/python.scm (python-rencode): Update to 1.0.5.
[arguments]: Add a 'delete-bogus-test' phase.
 2018-09-21 13:18:42 +02:00
Tobias Geerinckx-Rice
e36058634d
gnu: python-hdf4: Use INVOKE. 
* gnu/packages/python.scm (python-hdf4)[arguments]: Substitute INVOKE
for SYSTEM*.
 2018-09-21 13:18:42 +02:00
Tobias Geerinckx-Rice
6f05556ba7
gnu: s6: Update to 2.7.2.1. 
* gnu/packages/skarnet.scm (s6): Update to 2.7.2.1.
 2018-09-21 13:18:41 +02:00
Tobias Geerinckx-Rice
174988fa05
gnu: perl-xml-compile: Update to 1.60. 
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.60.
[propagated-inputs]: Add perl-carp, perl-scalar-list-utils, and
perl-types-serialiser.
 2018-09-21 13:18:41 +02:00
Nicolas Goaziou
1df40d3dbf
gnu: emacs-orgalist: Update to 1.9. 
* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.9.
 2018-09-21 11:52:12 +02:00
Tobias Geerinckx-Rice
3752b683dc
gnu: openscenegraph: Update to 3.6.3. 
* gnu/packages/graphics.scm (openscenegraph): Update to 3.6.3.
[source]: Use GIT-FILE-NAME.
[inputs]: Remove unused pth and qtbase.
 2018-09-21 10:25:33 +02:00
Tobias Geerinckx-Rice
29ddbc5607
gnu: python-pydot: Update to 1.2.4. 
* gnu/packages/graphviz.scm (python-pydot): Update to 1.2.4.
[arguments]: Run the test suite.
[native-inputs]: Add python-chardet.
 2018-09-21 10:25:32 +02:00
Tobias Geerinckx-Rice
1779aaa09a
Add 'GNU Guix' comment to all (gnu packages) headers. 
* gnu/packages/debian.scm, gnu/packages/syndication.scm: Add comments.
 2018-09-21 10:25:32 +02:00
Tobias Geerinckx-Rice
4aa64e3a81
gnu: ubuntu-keyring: Update to 2018.09.18.1. 
* gnu/packages/debian.scm (ubuntu-keyring): Update to 2018.09.18.1.
 2018-09-21 10:25:32 +02:00
Tobias Geerinckx-Rice
eeecbe09cc
gnu: perl-dbd-mysql: Update to 4.048. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
 2018-09-21 10:25:31 +02:00
Danny Milosavljevic
e0b07ccc1a
gnu: rust: Work around mtime bug in rust build helpers. 
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[fix-mtime-bug]:
Delete.
[reset-timestamps-after-changes]: Modify.
(rust-1.24): Don't delete "fix-mtime-bug" since now it doesn't ever
get created.
 2018-09-21 01:35:00 +02:00
Danny Milosavljevic
1bfaae25fa
gnu: rust@1.20.0: Fix tests. 
* gnu/packages/rust.scm (rust-1.23)[arguments]<#:phases>
[patch-cargo-tests, ignore-glibc-2.27-incompatible-test,fix-mtime-bug]: Move
to...
(rust-1.20): ... here.
 2018-09-21 01:31:10 +02:00
Mark H Weaver
83e8b1d794
gnu: linux-libre: Update to 4.18.9. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.9.
(%linux-libre-hash): Update hash.
 2018-09-20 18:04:56 -04:00
Mark H Weaver
c57a2a12b1
gnu: linux-libre@4.14: Update to 4.14.71. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.71.
(%linux-libre-4.14-hash): Update hash.
 2018-09-20 18:04:48 -04:00
Mark H Weaver
41d6afb266
gnu: linux-libre@4.9: Update to 4.9.128. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.128.
 2018-09-20 18:04:42 -04:00
Mark H Weaver
c6ede267e6
gnu: linux-libre@4.4: Update to 4.4.157. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.157.
 2018-09-20 18:04:35 -04:00
fis trivial
ea2364621a
gnu: qbittorrent: Update to 4.1.3. 
* gnu/packages/bittorrent.scm (qbittorrent): Update to 4.1.3.
[inputs]: Use python-wrapper instead of python.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-09-20 15:31:17 -04:00
fis trivial
f5c10a94ef
gnu: gprolog: Update to 1.4.5. 
* gnu/packages/gprolog.scm (gprolog): Update to 1.4.5.
[source]: Add an alternate source URL.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-09-20 15:27:43 -04:00
Ricardo Wurmus
89ee8a6edf
gnu: rsem: Update to 1.3.1. 
* gnu/packages/bioinformatics.scm (rsem): Update to 1.3.1.
[source]: Fetch from git; remove patch; delete bundled samtools.
[arguments]: Pass make flags; adjust phases.
[inputs]: Remove ncurses and samtools-0.1; add htslib-1.3.
* gnu/packages/patches/rsem-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-09-20 17:55:26 +02:00
Ricardo Wurmus
a235ea4f30
gnu: ghc-pandoc-citeproc: Update to 0.14.3.1. 
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): Update to 0.14.3.1.
 2018-09-20 17:20:07 +02:00
Ricardo Wurmus
e30397dddb
gnu: ghc-xml-conduit: Update to 1.8.0.1. 
* gnu/packages/haskell.scm (ghc-xml-conduit): Update to 1.8.0.1.
[inputs]: Add ghc-doctest.
 2018-09-20 17:20:02 +02:00
Ricardo Wurmus
391fc11f0e
gnu: python2-scikit-learn: Fix check phase. 
* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]:
Override check phase to disable broken tests and pass environment variables.
 2018-09-20 15:56:59 +02:00
Ricardo Wurmus
26358ac5ab
gnu: Add r-parmigene. 
* gnu/packages/cran.scm (r-parmigene): New variable.
 2018-09-20 15:56:30 +02:00
Marius Bakke
3e12df7d71
gnu: Add emacs-dired-sidebar. 
* gnu/packages/emacs.scm (emacs-dired-sidebar): New public variable.
 2018-09-20 13:29:29 +02:00
Marius Bakke
166b2c970e
gnu: eolie: Update home page. 
* gnu/packages/gnome.scm (eolie)[home-page]: Set to wiki.gnome.org/Apps/Eolie.
 2018-09-20 13:29:29 +02:00
Arun Isaac
9926b8f809
gnu: services: Add iptables service. 
* gnu/services/networking.scm (<iptables-configuration>): New record type.
(iptables-service-type): New variable.
* gnu/tests/networking.scm (run-iptables-test): New procedure.
(%test-iptables): New variable.
* doc/guix.texi (Networking Services): Document it.
 2018-09-20 13:09:55 +05:30
Tobias Geerinckx-Rice
3e63a83c0f
gnu: u-boot: Use HTTPS home page. 
* gnu/packages/bootloaders.scm (u-boot)[home-page]: Use HTTPS.
 2018-09-20 04:50:34 +02:00
Tobias Geerinckx-Rice
84c7fbfd6d
gnu: ccid: Update to 1.4.30. 
* gnu/packages/security-token.scm (ccid): Update to 1.4.30.
 2018-09-20 04:50:34 +02:00
Tobias Geerinckx-Rice
4eb161962f
gnu: opusfile: Update to 0.11. 
* gnu/packages/xiph.scm (opusfile): Update to 0.11.
 2018-09-20 04:50:33 +02:00
Tobias Geerinckx-Rice
e61c2991e4
Use INVOKE in (gnu packages xdisorg). 
* gnu/packages/xdisorg.scm (scrot, unclutter, xautolock, nxbelld)
[arguments]: Use INVOKE.
 2018-09-20 04:17:04 +02:00
Tobias Geerinckx-Rice
2385ecb224
Use INVOKE in (gnu packages shells). 
* gnu/packages/shells.scm (mksh)[arguments]: Use INVOKE...
(scsh)[arguments]: ...and also return #t from all phases.
 2018-09-20 04:17:04 +02:00
Tobias Geerinckx-Rice
9923d5a40f
gnu: Use INVOKE & return #t from Ruby package phases. 
* gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from
all phases.
* gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute
INVOKE for SYSTEM*.
* gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate)
(ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins)
(ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure)
(ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard)
(ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers)
(ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer)
(ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery)
(ruby-rc4, ruby-concurrent)[arguments]: Likewise.
 2018-09-20 04:17:04 +02:00
Tobias Geerinckx-Rice
4f66ae2899
gnu: ruby-heredoc-unindent: Fix typo in description. 
* gnu/packages/ruby.scm (ruby-heredoc-unindent)[description]: Fix typo.
 2018-09-20 04:17:03 +02:00
Tobias Geerinckx-Rice
7616d75fd6
Use INVOKE in (gnu packages telephony). 
* gnu/packages/telephony.scm (libiax2, mumble)[arguments]: Use INVOKE.
 2018-09-20 04:17:03 +02:00
Tobias Geerinckx-Rice
e564d33ce8
gnu: gourmet: Use HTTPS home page. 
* gnu/packages/nutrition.scm (gourmet)[home-page]: Use HTTPS.
 2018-09-20 04:17:03 +02:00
Tobias Geerinckx-Rice
29a000b602
gnu: sg3-utils: Update to 1.44. 
* gnu/packages/scsi.scm (sg3-utils): Update to 1.44.
 2018-09-20 04:17:02 +02:00