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Author SHA1 Message Date
Julien Lepiller
24851bf6f9
gnu: Add ocaml-core. 
* gnu/packages/ocaml.scm (ocaml-core): New variable.
(ocaml4.07-core): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:53 +02:00
Julien Lepiller
16e02d2b0e
gnu: ocaml-jane-street-headers: Add variant. 
* gnu/packages/ocaml.scm (ocaml-jane-street-heaers)[properties]: Add
ocaml4.07 variant.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:52 +02:00
Julien Lepiller
0d7b065b1e
gnu: Add ocaml-timezone. 
* gnu/packages/ocaml.scm (ocaml-timezone): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:49 +02:00
Julien Lepiller
e2a2c166a1
gnu: Add ocaml-core-kernel. 
* gnu/packages/ocaml.scm (ocaml-core-kernel): New variable.
(ocaml4.07-core-kernel): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:48 +02:00
Julien Lepiller
6cf981afcd
gnu: Add ocaml-base-bigstring. 
* gnu/packages/ocaml.scm (ocaml-base-bigstring): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:43 +02:00
Julien Lepiller
9fe3632e64
gnu: Add ocaml-ppx-jane. 
* gnu/packages/ocaml.scm (ocaml-ppx-jane): New variable.
(ocaml4.07-ppx-jane): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:40 +02:00
Julien Lepiller
e487d5666a
gnu: Add ocaml-ppx-fail. 
* gnu/packages/ocaml.scm (ocaml-ppx-fail): New variable.
(ocaml4.07-ppx-fail): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:39 +02:00
Julien Lepiller
49a106f14e
gnu: Add ocaml-base-quickcheck. 
* gnu/packages/ocaml.scm (ocaml-base-quickcheck): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:36 +02:00
Julien Lepiller
5e448f5f94
gnu: Add ocaml-splittable-random. 
* gnu/packages/ocaml.scm (ocaml-splittable-random): New variable.
(ocaml4.07-splittable-random): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:33 +02:00
Julien Lepiller
acb69501da
gnu: Add ocaml-ppx-sexp-message. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-message): New variable.
(ocaml4.07-ppx-sexp-message): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:30 +02:00
Julien Lepiller
166168c208
gnu: Add ocaml-ppx-sexp-value. 
* gnu/packages/ocaml.scm (ocaml-ppx-sexp-value): New variable.
(ocaml4.07-ppx-sexp-value): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:29 +02:00
Julien Lepiller
755122b3af
gnu: Add ocaml-ppx-bench. 
* gnu/packages/ocaml.scm (ocaml-ppx-bench): New variable.
(ocaml4.07-ppx-bench): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:26 +02:00
Julien Lepiller
e5deab0a7a
gnu: Add ocaml-ppx-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-ppx-bin-prot): New variable.
(ocaml4.07-ppx-bin-prot): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:24 +02:00
Julien Lepiller
76a416bf04
gnu: Add ocaml-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-bin-prot): New variable.
(ocaml4.07-bin-prot): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:23 +02:00
Julien Lepiller
6f8ae2b2b9
gnu: Add ocaml-ppx-fixed-literal. 
* gnu/packages/ocaml.scm (ocaml-ppx-fixed-literal): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:21 +02:00
Julien Lepiller
a703b1d9c5
gnu: Add ocaml-ppx-module-timer. 
* gnu/packages/ocaml.scm (ocaml-ppx-module-timer): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:19 +02:00
Julien Lepiller
5caa91e219
gnu: Add ocaml-ppx-pipebang. 
* gnu/packages/ocaml.scm (ocaml-ppx-pipebang): New variable.
(ocaml4.07-ppx-pipebang): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:18 +02:00
Julien Lepiller
bee0de9365
gnu: Add ocaml-ppx-stable. 
* gnu/packages/ocaml.scm (ocaml-ppx-stable): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:15 +02:00
Julien Lepiller
ca36468083
gnu: Add ocaml-ppx-string. 
* gnu/packages/ocaml.scm (ocaml-ppx-string): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:12 +02:00
Julien Lepiller
a18414adc4
gnu: Add ocaml-ppx-typerep-conv. 
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable.
(ocaml4.07-ppx-typerep-conv): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:10 +02:00
Julien Lepiller
d9f0685dea
gnu: Add ocaml-typerep. 
* gnu/packages/ocaml.scm (ocaml-typerep): New variable.
(ocaml4.07-typerep): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:07 +02:00
Julien Lepiller
36e0e198fe
gnu: Add ocaml-spawn. 
* gnu/packages/ocaml.scm (ocaml-spawn): New variable.
(ocaml4.07-spawn): Inherit from it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:56:03 +02:00
pukkamustard
d79e10b7e0
gnu: ocaml-odoc: Update to 2.2.0-alpha. 
* gnu/packages/ocaml.scm (ocaml-odoc): Update to 2.2.0-alpha.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-11 11:55:47 +02:00
Efraim Flashner
72abf9b9b8
gnu: jq: Only build with valgrind on supported systems. 
* gnu/packages/web.scm (jq)[native-inputs]: Only include valgrind on
systems which it supports.
 2022-04-10 20:49:34 +03:00
Efraim Flashner
96a132809f
gnu: smithwaterman: Fix cross-compiling. 
The 'ar' matched the 'ar' in 'aarch64-linux-gnu' to unfun consequences.

* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: More
closely match the 'ar' and 'ld' commands when substituting them.
 2022-04-10 20:49:33 +03:00
Guillaume Le Vaillant
81567f751b
gnu: llvm-3: Fix build. 
* gnu/packages/llvm.scm (llvm-3.9)[arguments]: Use gexp. Add
  'shared-lib-workaround' phase.

Co-authored-by: Maxime Devos <maximedevos@telenet.be>
 2022-04-10 19:22:43 +02:00
Leo Famulari
2299d2c896
gnu: linux-libre 5.10: Update to 5.10.110. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.110.
(linux-libre-5.10-pristine-source): Update hash.
 2022-04-10 01:18:04 -04:00
Leo Famulari
fec46d977a
gnu: linux-libre 5.15: Update to 5.15.33. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.33.
(linux-libre-5.15-pristine-source): Update hash.
 2022-04-10 01:18:04 -04:00
Leo Famulari
3d372cc2fe
gnu: linux-libre: Update to 5.16.19. 
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.19.
(linux-libre-5.16-pristine-source): Update hash.
 2022-04-10 01:18:04 -04:00
Leo Famulari
002928c663
gnu: linux-libre 5.17: Update to 5.17.2. 
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.2.
(linux-libre-5.17-pristine-source): Update hash.
 2022-04-10 01:17:58 -04:00
Michael Rohleder
d10cee7865
gnu: strawberry: Update to 1.0.3. 
* gnu/packages/music.scm (strawberry): Update to 1.0.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-10 00:17:41 +02:00
itd
b0d3f42372
gnu: efivar: Fix build errors on i686-linux. 
* gnu/packages/patches/efivar-211.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (efivar)[source]<origin>: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-10 00:17:40 +02:00
Marius Bakke
975966ba09
gnu: Zabbix: Update to 6.0.3. 
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 6.0.3.
 2022-04-09 16:09:50 +02:00
Marius Bakke
aa5716703f
gnu: ganeti: Update to 3.0.2. 
* gnu/packages/patches/ganeti-haskell-compat.patch,
gnu/packages/patches/ganeti-sphinx-compat.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (ganeti): Update to 3.0.2.
[source](patches): Remove obsolete.
[arguments]: Remove obsolete phases.  Disable one more test.
 2022-04-09 14:27:43 +02:00
Marius Bakke
dce0249f18
gnu: ganeti: Fix test failure with PyYAML 6.0. 
This fixes a regression that was introduced in
27720d0fe1.

* gnu/packages/patches/ganeti-pyyaml-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (ganeti)[source](patches): Add it.
 2022-04-09 14:27:43 +02:00
Vagrant Cascadian
47b6451eb5
gnu: libxmlb: Update to 0.3.8. 
* gnu/packages/xlm.scm (libxmlb): Update to 0.3.8.
 2022-04-08 20:34:49 -07:00
Vagrant Cascadian
a720c900cc
gnu: reprotest: Update to 0.7.20. 
* gnu/packages/diffoscope.scm (reprotest): Update to 0.7.20.
 2022-04-08 15:32:34 -07:00
Vagrant Cascadian
55b5ad2eeb
gnu: diffoscope: Update to 209. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 209.
 2022-04-08 15:32:31 -07:00
Olivier Dion
a62873af7c
gnu: emacs-geiser: Add dependency on Project. 
* gnu/packages/emacs-xyz.scm (emacs-geiser)[propagated-inputs]: Add
emacs-project.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-08 23:59:48 +02:00
Brian Kubisiak
1d0e57fab8
gnu: lsof: Fix invalid G-Expression. 
Cross-compiling lsof is failing with an "invalid G-expression input"
error. Fix this by using a quoted list.

* gnu/packages/lsof.scm (lsof): Fix invalid G-Expression.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-08 23:59:48 +02:00
Jonathan Brielmaier
09ec1d6561
gnu: icedove: Update to 91.8 [fixes CVE-2022-1197]. 
* gnu/packages/gnuzilla.scm (icedove): Update to 91.8.
 2022-04-08 16:00:23 +02:00
jgart
96bd801780
gnu: Add cl-jzon. 
* gnu/packages/lisp-xyz.scm (cl-jzon, ecl-jzon, sbcl-jzon): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-08 10:03:58 +02:00
jgart
b67c67b027
gnu: cl-cffi: Remove trailing boolean. 
* gnu/packages/lisp-xyz.scm (sbcl-cffi)[arguments]: Remove trailing boolean.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-08 09:53:37 +02:00
jgart
9919e423a7
gnu: cl-legit: Update to 1.0.0-2.5f8a2d4. 
* gnu/packages/lisp-xyz.scm (sbcl-legit): Update to 1.0.0-2.5f8a2d4 and use
  revision variable in let block.
  [arguments]: Add 'patch-git-executable' phase.
  [inputs]: Add formatting and add missing git input.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-08 09:50:53 +02:00
Marius Bakke
1d4f2cdc82
gnu: nginx: Build optimized binaries. 
* gnu/packages/web.scm (nginx)[arguments]: Add "-O2 -g" to CFLAGS.
 2022-04-07 23:12:44 +02:00
Marius Bakke
c9ce02ecff
gnu: nginx: Respect #:configure-flags. 
* gnu/packages/web.scm (nginx)[arguments]: Add #:configure-flags.  Move
default settings out of the 'configure' phase.
 2022-04-07 23:12:44 +02:00
Marius Bakke
4079cd9ba3
gnu: nginx: Use G-expressions. 
* gnu/packages/web.scm (nginx)[arguments]: Rewrite in gexp style.  Remove
trailing #t's.
 2022-04-07 23:12:44 +02:00
Marius Bakke
cee03495bf
gnu: uBlock Origin: Update to 1.42.4. 
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.42.4.
 2022-04-07 23:12:44 +02:00
Marius Bakke
0b3f52051b
gnu: ungoogled-chromium: Update to 100.0.4896.75-1. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 100.
(%chromium-version): Set to 100.0.4896.75.
(%debian-revision): Set to debian/100.0.4896.60-1.
(%ungoogled-origin): Update hash.
(%debian-patches): Updates hashes.  Remove obsolete.
(ungoogled-chromium): Update hash.
[arguments]: Remove obsolete substitution.  Patch libvulkan.so.1 in more
files, and add absolute reference to Mesa ICDs.
 2022-04-07 23:12:44 +02:00
Marius Bakke
8e8b8ffdee
gnu: ungoogled-chromium: Update to 99.0.4844.84-1. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 99.
(%chromium-version): Set to 99.0.4844.84.
(%ungoogled-origin): Update hash.
(ungoogled-chromium): Likewise.
[arguments]: Patch absolute file names to GTK libraries.  Patch one more
Opus header inclusion.  Remove labels in wrapping phase.
[native-inputs]: Change from CLANG-13 to CLANG-14.
[inputs]: Add AT-SPI2-ATK.
 2022-04-07 23:12:44 +02:00
Marius Bakke
e9473ed49b
gnu: LLVM, Clang: Add 14.0.0. 
* gnu/packages/llvm.scm (%llvm-monorepo-hashes, %llvm-patches, llvm-monorepo):
New variables.
(clang-runtime-from-llvm): Make HASH optional; use monorepo when not present.
(clang-from-llvm): Likewise.
(llvm-14, clang-runtime-14, clang-14, clang-toolchain-14, lld-14): New variables.
(llvm-13): Inherit from LLVM-14.
(lld-13): Inherit from LLD-14.
(lld): Turn into alias for LLD-14.
* gnu/packages/patches/clang-14.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zig.scm (zig): Change from LLD to LLD-13.
 2022-04-07 23:12:44 +02:00
Marius Bakke
4e4a79601c
gnu: radeontop: Simplify inputs. 
* gnu/packages/linux.scm (radeontop)[native-inputs]: Simplify.
 2022-04-07 23:12:44 +02:00
Malte Frank Gerdes
b749329888
gnu: Add cura. 
* gnu/packages/engineering.scm (cura): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 22:32:01 +02:00
Guillaume Le Vaillant
4926c10476
gnu: Add python-pynest2d. 
* gnu/packages/engineering.scm (python-pynest2d): New variable.
 2022-04-07 22:32:01 +02:00
Guillaume Le Vaillant
ace3a7ad89
gnu: Add libnest2d-for-cura. 
* gnu/packages/engineering.scm (libnest2d-for-cura): New variable.
 2022-04-07 22:32:01 +02:00
Malte Frank Gerdes
21594c06b1
gnu: Add libsavitar. 
* gnu/packages/engineering.scm (libsavitar): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 22:32:01 +02:00
Malte Frank Gerdes
79b50d5d5b
gnu: Add libcharon. 
* gnu/packages/engineering.scm (libcharon): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 22:32:01 +02:00
Malte Frank Gerdes
f14d43b367
gnu: Add uranium. 
* gnu/packages/engineering.scm (uranium): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 22:32:01 +02:00
Malte Frank Gerdes
b4b93035c1
gnu: Add python-trimesh. 
* gnu/packages/python-science.scm (python-trimesh): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 18:35:38 +02:00
Malte Frank Gerdes
504dd8b696
gnu: Add python-pyinstrument. 
* gnu/packages/python-check.scm (python-pyinstrument): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 18:35:38 +02:00
Malte Frank Gerdes
8d2493dda1
gnu: Add cura-binary-data. 
* gnu/packages/engineering.scm (cura-binary-data): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 15:54:02 +02:00
Malte Frank Gerdes
742a7d897f
gnu: Add cura-engine. 
* gnu/packages/engineering.scm (cura-engine): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 15:41:18 +02:00
Malte Frank Gerdes
390d68c956
gnu: Add libarcus. 
* gnu/packages/engineering.scm (libarcus): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 15:30:49 +02:00
André A. Gomes
7409f246e2
gnu: cl-slynk: Update to 1.0.43-6.4513c38. 
* gnu/packages/lisp-xyz.scm (sbcl-slynk): Update to 1.0.43-6.4513c38.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 13:38:00 +02:00
André A. Gomes
68d7471cbd
gnu: emacs-sly: Update to 1.0.43-6.4513c38. 
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 1.0.43-6.4513c38.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 13:34:45 +02:00
Peter Polidoro
90b5353132
gnu: kicad: Update to 6.0.4. 
* gnu/packages/engineering.scm (kicad, kicad-doc, kicad-symbols,
  kicad-footprints, kicad-packages3d, kicad-templates): Update to 6.0.4.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 11:11:14 +02:00
jgart
b94b334cb7
gnu: cl-sxql: Update to 0.1.0-3.cc3478c. 
* gnu/packages/lisp-xyz.scm (sbcl-sxql): Update to 0.1.0-3.cc3478c and use
  revision variable in let block.
  [inputs]: Add missing sbcl-trivia input.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-07 10:23:15 +02:00
Ludovic Courtès
d4172babe0
gnu: shepherd: Add 0.9.0. 
* gnu/packages/admin.scm (shepherd): Rename to...
(shepherd-0.8): ... this.  New variable.
(shepherd): Define as an alias for SHEPHERD-0.8.
(shepherd-0.9): New variable.
(guile2.2-shepherd): Inherit from SHEPHERD-0.9 and adjust inputs
accordingly.
 2022-04-07 00:08:55 +02:00
Efraim Flashner
aacd44278b
gnu: lagrange: Update to 1.12.1. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.12.1.
 2022-04-06 23:33:28 +03:00
Efraim Flashner
00ce149606
gnu: keepassxc: Update to 2.7.1. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.7.1.
 2022-04-06 23:31:22 +03:00
Efraim Flashner
3ac90f92a0
gnu: vim: Update to 8.2.4701. 
* gnu/packages/vim.scm (vim): Update to 8.2.4701.
[arguments]: Adjust custom 'skip-or-fix-failing-tests phase to skip
another test.
 2022-04-06 22:57:48 +03:00
Ricardo Wurmus
3b262b51fa
gnu: python-pybtex: Update to 0.24.0. 
* gnu/packages/python-xyz.scm (python-pybtex): Update to 0.24.0.
[native-inputs]: Remove python-nose; add python-pytest.
[inputs]: Move python-latexcodec, python-pyyaml, and python-six from here...
[propagated-inputs]: ...to here.
[arguments]: Use pytest.
 2022-04-06 12:37:33 +02:00
Ricardo Wurmus
e1df15794b
gnu: python-latexcodec: Update to 2.0.1. 
* gnu/packages/python-xyz.scm (python-latexcodec): Update to 2.0.1.
[inputs]: Move python-six from here...
[propagated-inputs]: ...to here.
 2022-04-06 12:37:10 +02:00
Hong Li
e3e3381fdb
gnu: Add r-rnaseqdtu. 
* gnu/packages/bioinformatics.scm (r-rnaseqdtu): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Hong Li
730ac9ab85
gnu: Add r-stager. 
* gnu/packages/bioconductor.scm (r-stager): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Hong Li
a8182f386e
gnu: Add r-rafalib. 
* gnu/packages/cran.scm (r-rafalib): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Mark H Weaver
3b3cc9dfed
gnu: icecat: Update to 91.8.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2022-1097, CVE-2022-1196, CVE-2022-24713,
CVE-2022-28281, CVE-2022-28282, CVE-2022-28285, CVE-2022-28286, and
CVE-2022-28289.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2022-04-05 18:12:15 -04:00
Liliana Marie Prikler
4bfb75531c
gnu: poco: Make description a full sentence. 
* gnu/packages/cpp.scm (poco)[description]: Expand into a full sentence.
 2022-04-05 21:17:59 +02:00
Ricardo Wurmus
d643ef38ed
gnu: u-boot-rockpro64-rk3399: Add support for booting from SCSI/SATA. 
* gnu/packages/bootloaders.scm (u-boot-rockpro64-rk3399)[arguments]: Add
  'patch-config phase to support SCSI/SATA disks.

Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
 2022-04-05 12:05:28 -07:00
Vagrant Cascadian
4a0d045990
gnu: u-boot: Update to 2022.04. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2022.01.
  [native-inputs]: Add gnutls, tinfo, libuuid.
  (u-boot-qemu-riscv64-smode): Drop custom
  patches.
* gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Refresh patch.
* gnu/packages/patches/u-boot-riscv64-fix-extlinux.patch: Remove patch,
  applied upstream.
* gnu/local.mk (dist_patch_DATA): Update with removed patches.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-05 12:05:22 -07:00
Vagrant Cascadian
20302e0b16
gnu: Add ncurses-with-tinfo. 
* gnu/packages/ncurses.scm (ncurses/tinfo): New variable.
 2022-04-05 12:05:19 -07:00
Andrew Tropin
e777c3e34c
gnu: l2md: Update to 9db252bc. 
[[PGP Signed Part:No public key for 2208D20958C1DEB0 created at 2022-03-28T11:03:48+0200 using RSA]]

* gnu/packages/mail.scm (l2md): Update to 9db252bc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:41 +02:00
ykonai
84e0cbbc9c
gnu: plocate: Build with "--sharedstatedir=/var". 
Current plocate package sets the --sharedstatedir to a store directory, which
causes updatedb and plocate to fail by default since the store is immutable.
This will set the default database path to /var/cache/plocate.db instead.

* gnu/packages/search.scm (plocate): Change build options.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:41 +02:00
Leo Nikkilä
d15a601a85
gnu: phodav: Use libsoup 2 instead of libsoup 3. 
Looks like phodav requires libsoup 2. Example of failing build logs,
wanting libsoup 2.4: <https://ci.guix.gnu.org/build/584454/log/raw>

After swapping the dependency, tests were failing due to HOME not being
writable. I added a new build phase to account for this. I also removed
the start-virtual-dir-server phase which no longer seems required, the
tests pass without it.

* gnu/packages/gnome.scm (phodav): Fix build, tests.
[inputs]: Replace libsoup 3 with libsoup 2.
[arguments]<#:phases>[set-temporary-home]: New phase.
[arguments]<#:phases>[start-virtual-dir-server]: Remove phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
jgart
86ee397e26
gnu: pantheon-calculator: Update to 1.7.2. 
* gnu/packages/pantheon.scm (pantheon-calculator): Update to 1.7.2.
[arguments]: Remove trailing boolean.
[inputs]: Use guix style and add libhandy input.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
Felix Gruber
c9cca908fa
gnu: python-w3lib: Fix build. 
* gnu/packages/python-web.scm (python-w3lib): Fix build.
  [source]: Add python-w3lib-fix-test-failure.patch.
  [arguments]: Use pytest in the 'check phase.
  [native-inputs]: Add python-pytest.
* gnu/packages/patches/python-w3lib-fix-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
Zhu Zihao
27a6e8501f
gnu: python-gst: Fix the concatenation of install path. 
Fixes a regression introduced in a5c2e7961c.

* gnu/packages/gstreamer.scm (python-gst):
[arguments]:
<configure-flags>: Add missing leading slash.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
jgart
9d25dab4db
gnu: python-dotenv: Update to 0.20.0. 
* gnu/packages/python-xyz.scm (python-dotenv): Update to 0.20.0.
[home-page]: Update home page.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
antlers
0748d3febd
gnu: linux: Allow kconfig options to be strings 
* gnu/packages/linux.scm (config->string): add a clause handling strings

Allows for the declarative configuration of kconfig options which accept
strings, such as CONFIG_MODULE_SIG_KEY.

I've enclosed the given string in quotes, but don't do any kind of
escaping. See the kernel mailing list for the current state of escaped
strings upstream:

https://patchwork.kernel.org/project/linux-kbuild/patch/1431003982-992-1-git-send-email-sr@denx.de/

Apologies to those with double-quotes or backslashes in their
CONFIG_SYSTEM_*_KEYS.

Signed-off-by: antlers <autumnalantlers@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:40 +02:00
Michael Rohleder
3e599b99da
gnu: celluloid: Update to 0.23. 
* gnu/packages/video.scm (celluloid): Update to 0.23.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:39 +02:00
Imran Iqbal
1fed7ab09e
gnu: curlie: Update to 1.6.9 
* gnu/packages/curl.scm (curlie): Update to 1.6.9

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:39 +02:00
Daniel Meißner
2a70e7922c
gnu: xmonad-next: Change #:phases to gexp. 
* gnu/packages/wm.scm (xmonad-next)[arguments]: Use #$output, #$name
and #$synopsis instead of %output, name and synopsis.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-05 20:41:39 +02:00
Ricardo Wurmus
66177c2b87
Merge branch 'wip-pyyaml' 2022-04-05 19:03:57 +02:00
Ricardo Wurmus
df2dc0c416
gnu: pigx-scrnaseq: Set NUMBA_CACHE_DIR. 
This is needed since the update of python-loompy.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Rename
'set-PYTHONPATH to 'set-additional-environment-variables and set
NUMBA_CACHE_DIR.
 2022-04-05 18:40:48 +02:00
Ricardo Wurmus
e721122069
gnu: pigx-scrnaseq: Use new inputs style. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Use plain list.
 2022-04-05 18:40:48 +02:00
Ricardo Wurmus
5d1c9fcdcf
gnu: pigx-scrnaseq: Update to 1.1.8. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.8.
[patches]: Remove.
[native-inputs]: Remove.
* gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-04-05 18:40:48 +02:00
Ricardo Wurmus
860010ac2a
gnu: r-with-tests: Update to 4.1.3. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.3.
 2022-04-05 15:14:41 +02:00
Greg Hogan
78e8c20179
gnu: git: Update to 2.35.1. 
* gnu/packages/version-control.scm (git): Update to 2.35.1.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-04-05 08:48:47 -04:00
Maxim Cournoyer
8a9bf794e1
Revert "gnu: git: Update to 2.35.1." 
This reverts commit 223a3d7f7f, as it triggered
thousands of rebuilds due to inadvertently touching git-minimal/fixed.

Reported-by: Christopher Baines <mail@cbaines.net>
 2022-04-05 08:41:36 -04:00
Ricardo Wurmus
27720d0fe1
gnu: python-pyyaml: Update to 6.0. 
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 6.0.
 2022-04-05 10:56:28 +02:00
Ricardo Wurmus
d3e1a94391
gnu: python2-pyyaml: Detach source from python-pyyaml. 
* gnu/packages/python-xyz.scm (python2-pyyaml): Override source and version
fields.
(python-pyyaml)[properties]: Add python2-variant.
 2022-04-05 10:56:23 +02:00
Leo Famulari
20303c0b1c
gnu: eyeD3: Update to 0.9.6. 
* gnu/packages/mp3.scm (eyed3): Update to 0.9.6.
[propagated-inputs]: Add python-deprecation and python-filetype.
 2022-04-04 19:57:12 -04:00
Feng Shu
4b451813f7
gnu: Add parole. 
* gnu/packages/xfce.scm (parole): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:03 +02:00
kiasoc5
2bef31fe25
gnu: mediainfo: Update to 22.03. 
* gnu/packages/video.scm (mediainfo): Update to 22.03.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:03 +02:00
kiasoc5
f9ad9d65fe
gnu: libmediainfo: Update to 22.03. 
* gnu/packages/video.scm (libmediainfo): Update to 22.03.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:02 +02:00
Zhu Zihao
095c609dfd
gnu: gtkmm: Update to 4.6.1. 
* gnu/packages/gtk.scm (gtkmm): Update to 4.6.1.
[propagated-inputs]: Remove atkmm because it's no longer needed.
* gnu/packages/gtk.scm (pangomm): Update to 2.50.0.
[propagated-inputs]: Replace 'pango' with 'pango-next'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:02 +02:00
Zhu Zihao
287b98031f
gnu: Add fcitx5-gtk4. 
* gnu/packages/fcitx5.scm (fcitx5-gtk4): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:02 +02:00
Zhu Zihao
ef3cae59a2
gnu: gtk: Update to 4.6.1. 
* gnu/local.mk (dist_patch_DATA): Remove gtk-introspection-test.patch.
* gnu/packages/patches/gtk-introspection-test.patch: Remove.
* gnu/packages/gtk.scm (gtk): Update to 4.6.1.
[source]: Remove stale patch.
[arguments]<phases>: Add 'patch-rst2man' phase, correct the binary name of
rst2man to 'rst2man.py'
[inputs]: Add libjpeg-turbo, libpng, libtiff.
[native-inputs]: Add python-docutils.
[propagated-inputs]: Use pango-next.
* gnu/packages/fcitx5.scm (fcitx5-gtk)[arguments]: Disable GTK4 build.
<configure-flags>: Add "-DENABLE_GTK_IM_MODULE=OFF".
<phases>: In phase "patch-install-prefix", Remove GTK4 code.
[inputs]: Remove package gtk.
[outputs]: Remove output "gtk4".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:02 +02:00
Zhu Zihao
4df7fe14ff
gnu: pango 1.50: Add version 1.50.4. 
* gnu/packages/gtk.scm(pango-next): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-04 22:58:02 +02:00
Efraim Flashner
345f79b2cf
gnu: freebayes: Fix test suite. 
* gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Add python.
 2022-04-04 22:58:25 +03:00
Efraim Flashner
c1fc65ecb6
gnu: smithwaterman: Use new style for phases. 
* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Use list
of G-Expressions.
 2022-04-04 22:45:37 +03:00
Efraim Flashner
855c8d9d41
gnu: smithwaterman: Fix cross-compiling. 
* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Add
make-flag to use cxx-for-target. Adjust custom 'patch-source and
'build-dynamic phases to use cross toolchain binaries when cross
compiling. Remove trailing #t from phases.
 2022-04-04 22:41:54 +03:00
Michael Rohleder
9bd4ed3dde
gnu: marble-qt: Update to 21.12.3. 
* gnu/packages/kde.scm (marble-qt): Update to 21.12.3.
  [inputs]: Add qtwebchannel, qtwebengine.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-04 10:50:21 +02:00
Mădălin Ionel Patrașcu
2213c60419
gnu: Add r-zoeppritz. 
* gnu/packages/cran.scm (r-zoeppritz): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-04 10:44:47 +02:00
Attila Lendvai
4d336ecf20
gnu: Add python-bip39. 
* gnu/packages/python-xyz.scm (python-bip39): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-04 10:32:01 +02:00
Efraim Flashner
aed1f47c4d
gnu: parallel: Update to 20220322. 
* gnu/packages/parallel.scm (parallel): Update to 20220322.
 2022-04-04 09:28:22 +03:00
Greg Hogan
367048036d
gnu: stgit: Update to 1.5. 
* gnu/packages/version-control.scm (stgit): Update to 1.5.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-04-04 00:10:07 -04:00
Maxim Cournoyer
223a3d7f7f
gnu: git: Update to 2.35.1. 
* gnu/packages/version-control.scm (git): Update to 2.35.1.
[phases]: Delete trailing #t.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-04-04 00:06:48 -04:00
jgart
757ececffb
gnu: emacs-elpy: Update to 1746e70. 
* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1746e70.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-04-04 00:06:32 -04:00
jgart
48d3a372fc
gnu: emacs-poet-theme: Update to 16eb694. 
* gnu/packages/emacs-xyz.scm (emacs-poet-theme): Update to 16eb694.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-04-04 00:06:32 -04:00
Maxim Cournoyer
eb4e8a4d9c
gnu: emacs-gnugo: Patch 'gnugo-program' variable. 
* gnu/packages/emacs-xyz.scm (emacs-gnugo)
[phases]{configure-default-gnugo-xpms-variable}: Rename to...
{configure}: ... this.  Patch the 'gnugo-program' variable.
[inputs]: Add gnugo.
[description]: Describe basic usage entry points.
 2022-04-04 00:06:31 -04:00
Leo Famulari
32b713e016
gnu: svt-av1: Update to 0.9.1. 
* gnu/packages/video.scm (svt-av1): Update to 0.9.1.
 2022-04-03 23:09:39 -04:00
Leo Famulari
7c94eea790
gnu: libaom: Update to 3.3.0. 
* gnu/packages/video.scm (libaom): Update to 3.3.0.
 2022-04-03 23:09:35 -04:00
Leo Famulari
6ed308bb3c
gnu: linux-libre 4.14: Update to 4.14.275. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.275.
(linux-libre-4.14-pristine-source): Update hash.
 2022-04-03 13:04:58 -04:00
Danny Milosavljevic
32d1f71593
gnu: xterm: Make big cursors work. 
* gnu/packages/patches/xterm-370-explicit-xcursor.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (xterm)[source]: Add it.
[arguments]<#:configure-flags>: Add "-lXcursor".
 2022-04-03 13:46:15 +02:00
Efraim Flashner
b0ea8808b6
gnu: cpufrequtils: Set file-name for source. 
* gnu/packages/linux.scm (cpufrequtils)[source]: Add file-name field.
 2022-04-03 14:10:12 +03:00
Efraim Flashner
bb5e79ca43
gnu: rust-combine-4: Update to 4.6.3. 
* gnu/packages/crates-io.scm (rust-combine-4): Update to 4.6.3.
[arguments]<cargo-inputs>: Add rust-futures-core-0.3,
rust-tokio-util-0.6. Remove rust-futures-util-0.3.
 2022-04-03 14:07:52 +03:00
Efraim Flashner
ae6216d2f8
gnu: rust-shlex-1: Update to 1.1.0. 
* gnu/packages/crates-io.scm (rust-shlex-1): Update to 1.1.0.
 2022-04-03 14:07:52 +03:00
Efraim Flashner
8a7f8d3759
gnu: rust-hyphenation-0.8: Update to 0.8.4. 
* gnu/packages/crates-io.scm (rust-hyphenation-0.8): Update to 0.8.4.
[arguments]: Don't skip build.
<cargo-inputs>: Remove duplicate entries.
<cargo-development-inputs>: New field. Add rust-criterion-0.3,
rust-once-cell-1, rust-quickcheck-1, rust-unicode-segmentation-1.
(rust-hyphenation-commons-0.8): Update to 0.8.4.
[arguments]: Don't skip build.
 2022-04-03 14:07:52 +03:00
Efraim Flashner
66f87ac273
gnu: rust-fsv-0.4: Update to 0.4.7. 
* gnu/packages/crates-io.scm (rust-fsv-0.4): Update to 0.4.7.
[arguments]: Don't skip build.
<cargo-development-inputs>: New field. Add rust-doc-comment-0.3,
rust-fnv-1, rust-memmap-0.7, rust-quickcheck-0.9, rust-rand-0.7.
 2022-04-03 14:07:51 +03:00
Efraim Flashner
2703daf6eb
gnu: rust-criterion-0.3: Update to 0.3.5. 
* gnu/packages/crates-io.scm (rust-criterion-0.3): Update to 0.3.5.
[arguments]<cargo-inputs>: Replace rust-approx-0.4 with 0.5,
rust-quickcheck-0.9 with 1.
 2022-04-03 14:07:51 +03:00
Efraim Flashner
17214a65d8
gnu: rust-criterion-plot-0.4: Update to 0.4.4. 
* gnu/packages/crates-io.scm (rust-criterion-plot-0.4): Update to 0.4.4.
[arguments]<cargo-inputs>: Replace rust-itertools-0.9 with 0.10.
 2022-04-03 14:07:50 +03:00
Efraim Flashner
44d44acaca
gnu: Add rust-os-str-bytes-6. 
* gnu/packages/crates-io.scm (rust-os-str-bytes-6): New variable.
(rust-os-str-bytes-4): Inherit from rust-os-str-bytes-6.
 2022-04-03 14:07:50 +03:00
Efraim Flashner
ed2acb1b16
gnu: Add rust-print-bytes-0.5. 
* gnu/packages/crates-io.scm (rust-print-bytes-0.5): New variable.
(rust-print-bytes-0.4): Inherit from rust-print-bytes-0.5.
 2022-04-03 14:07:50 +03:00
Efraim Flashner
23f56d4b49
gnu: Add rust-os-str-bytes-4. 
* gnu/packages/crates-io.scm (rust-os-str-bytes-4): New variable.
(rust-os-str-bytes-2): Inherit from rust-os-str-bytes-4.
 2022-04-03 14:07:49 +03:00
Efraim Flashner
44ceb9ee13
gnu: Add rust-print-bytes-0.4. 
* gnu/packages/crates-io.scm (rust-print-bytes-0.4): New variable.
 2022-04-03 14:07:49 +03:00
Efraim Flashner
d0bed3629c
gnu: Add rust-smawk-0.3. 
* gnu/packages/crates-io.scm (rust-smawk-0.3): New variable.
 2022-04-03 14:07:48 +03:00
Efraim Flashner
8b54123a9d
gnu: Add rust-ndarray-0.14. 
* gnu/packages/crates-io.scm (rust-ndarray-0.14): New variable.
* gnu/packages/patches/rust-ndarray-0.14-remove-blas-src.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2022-04-03 14:07:48 +03:00
Efraim Flashner
73e2312802
gnu: rust-escargot-0.5: Update to 0.5.7. 
* gnu/packages/crates-io.scm (rust-escargot-0.5): Update to 0.5.7.
[arguments]<cargo-inputs>: Remove rust-lazy-static-1. Add
rust-once-cell-1.
<cargo-development-inputs>: Replace rust-assert-fs-0.11 with 1.
 2022-04-03 14:07:48 +03:00
Efraim Flashner
f9fbdb5bbf
gnu: rust-terminal-size-0.1: Update to 0.1.17. 
* gnu/packages/crates-io.scm (rust-terminal-size-0.1): Update to 0.1.17.
[arguments]: Skip tests.
 2022-04-03 14:07:47 +03:00
Efraim Flashner
c76c2bb5a4
gnu: Add rust-lipsum-0.8. 
* gnu/packages/crates-io.scm (rust-lipsum-0.8): New variable.
 2022-04-03 14:07:47 +03:00
Efraim Flashner
c11aac2e1e
gnu: Add rust-unicode-linebreak-0.1. 
* gnu/packages/crates-io.scm (rust-unicode-linebreak-0.1): New variable.
 2022-04-03 14:07:46 +03:00
Efraim Flashner
99252c6d68
gnu: Add rust-uniquote-3. 
* gnu/packages/crates-io.scm (rust-uniquote-3): New variable.
 2022-04-03 14:07:46 +03:00
Efraim Flashner
fe98984880
gnu: Add rust-version-sync-0.9. 
* gnu/packages/crates-io.scm (rust-version-sync-0.9): New variable.
(rust-version-sync-0.8): Inherit from rust-version-sync-0.9.
 2022-04-03 14:07:45 +03:00
Efraim Flashner
cf9a58bd18
gnu: rust-os-pipe-0.9: Don't skip build. 
* gnu/packages/crates-io.scm (rust-os-pipe-0.9)[arguments]: Inherit from
rust-os-pipe-1.
 2022-04-03 14:07:45 +03:00
Efraim Flashner
f90052a87b
gnu: Add rust-os-pipe-1. 
* gnu/packages/crates-io.scm (rust-os-pipe-1): New variable.
(rust-os-pipe-0.9): Inherit from rust-os-pipe-1.
 2022-04-03 14:07:45 +03:00
Efraim Flashner
c4031f909f
gnu: Add rust-kstring-1. 
* gnu/packages/crates-io.scm (rust-kstring-1): New variable.
 2022-04-03 14:07:44 +03:00
Efraim Flashner
a834083441
gnu: Add rust-document-features-0.2. 
* gnu/packages/crates-io.scm (rust-document-features-0.2): New variable.
 2022-04-03 14:07:41 +03:00
Jonathan Brielmaier
3471b8fae2
gnu: radicale: Update to 3.1.5. 
* gnu/packages/dav.scm (radicale): Update to 3.1.5.
[source]: tags have a leading "v" now.
[arguments]: disable tests temporarily.

Tested-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
 2022-04-03 12:49:07 +02:00
Felix Gruber
a37a8a23bd
gnu: oil: Update to 0.9.9. 
* gnu/packages/shells.scm (oil): Update to 0.9.9.
  [source]: Add comment on embedded CPython like Ludo’ proposed in
  https://issues.guix.gnu.org/53642#3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-03 12:42:18 +02:00
Brendan Tildesley
9535b62170
gnu: mate-polkit: Improve synopsis. 
* gnu/packages/mate.scm (mate-polkit): Improve synopsis.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-03 12:42:18 +02:00
Brendan Tildesley
92b32a0592
gnu: xfce: Add notification support 
* gnu/packages/xfce.scm (xfce)[inputs]: Add XFCE4-NOTIFYD.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-03 12:42:18 +02:00
Brendan Tildesley
c315fb0cac
gnu: xfce: Remove input labels. 
(xfconf, libxfce4ui, xfce4-panel, xfce4-whiskermenu-plugin, xfce,
xfce4-screensaver): Remove input labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-03 12:42:18 +02:00
Brendan Tildesley
847a6f7c23
gnu: xfce4-screenshooter: Update to 1.9.10. 
* gnu/packages/xfce.scm (xfce4-screenshooter): Update to 1.9.10.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-03 12:42:17 +02:00
Brendan Tildesley
47d4b6ece4
gnu: xfce4-whiskermenu-plugin: Update to 2.6.2. 
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Update to 2.6.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-03 12:42:17 +02:00
Vagrant Cascadian
7902d17bc8
gnu: cpufrequtils: Update to 008-1.a2f0c39. 
Fixes build failure on non-x86 architectures, and brings cpufrequtils to the
state of the art from 2011.

* gnu/packages/linux.scm (cpufrequtils)[version]: Use git-version.
  [source]: Use git-fetch.
 2022-04-02 19:13:21 -07:00
jgart
49d0a80738
gnu: cl-dbi: Update to 0.9.5-2.738a74d. 
* gnu/packages/lisp-xyz.scm (sbcl-dbi): Update to 0.9.5-2.738a74d.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-02 16:36:49 +02:00
Chadwain Holness
a27cef76c2
gnu: python-pycountry: Update to 22.3.5. 
* gnu/packages/python-xyz.scm (python-pycountry): Update to 22.3.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-01 18:01:07 +02:00
Tanguy Le Carrour
8f5043bbc6
gnu: gnunet: Update to 0.16.3. 
* gnu/packages/gnunet.scm (gnunet): Update to 0.16.3.
[arguments]: Enable all the tests that were disabled.
[inputs]: Use new style. [native-inputs]: Add openssl.
[home-page]: Update URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-01 18:01:07 +02:00
Ludovic Courtès
6d54f1987f
gnu: vtk: Remove input labels. 
* gnu/packages/image-processing.scm (vtk)[inputs]: Remove labels.
 2022-04-01 18:01:07 +02:00
Ludovic Courtès
c3a20d91f9
gnu: vtk@6: Depend on Python 2.x, not 3.x. 
* gnu/packages/image-processing.scm (vtk-6)[native-inputs]: Replace
PYTHON with PYTHON-2.
 2022-04-01 18:01:06 +02:00
Ludovic Courtès
c1093dc7a6
gnu: libtool: Add 2.4.7. 
* gnu/packages/autotools.scm (libtool-2.4.7): New variable.
 2022-04-01 18:01:06 +02:00
Ludovic Courtès
0fffcfa41d
gnu: libressl: Add 'release-monitoring-url' property. 
* gnu/packages/tls.scm (libressl)[properties]: New field.
 2022-04-01 18:01:06 +02:00
jgart
b724c847a2
gnu: cl-usocket: Update to 0.8.4. 
* gnu/packages/lisp-xyz.scm (sbcl-usocket): Update to 0.8.4.
  [inputs]: Use new style.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-01 13:33:56 +02:00
Sébastien Lerique
fc94e93c4b
gnu: libfido2: Fix cross-compilation. 
* gnu/packages/security-token.scm (libfido2)[arguments]: Set the
PKG_CONFIG_EXECUTABLE variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 18:57:05 +03:00
Sébastien Lerique
89f3275ff5
gnu: libfido2: Use new style for inputs. 
* gnu/packages/security-token.scm (libfido2)[inputs]: Use new style.
Sort alphabetically.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 18:40:08 +03:00
Raphaël Mélotte via Guix-patches
4cfc1c433d
gnu: tio: Update to 1.36. 
* gnu/packages/terminals.scm (tio): Update to 1.36.
[native-inputs]: Add pkg-config.
[inputs]: Add libinih.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 18:25:31 +03:00
Christian Gelinek
9f82d1f1c0
gnu: iverilog: Add zlib dependency for LXT dump file format support. 
* gnu/packages/fpga.scm (iverilog)[native-inputs]: Add zlib.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 18:22:58 +03:00
cage
58874999c9
gnu: gmid: Update to 1.8.3. 
* gnu/packages/web.scm (gmid): Update to 1.8.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 18:19:19 +03:00
Collin J. Doering
c5ffc9b65d
gnu: plantuml: Update to 1.2022.3. 
* gnu/packages/uml.scm (plantuml): Update to 1.2022.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 17:52:19 +03:00
Ricardo Wurmus
05e68f31ba
gnu: python-velocyto: Set cache directory for Numba. 
* gnu/packages/bioinformatics.scm (python-velocyto)[arguments]: Add phase
'set-numba-cache-dir.
 2022-03-31 16:02:21 +02:00
Efraim Flashner
8f3dc994bb
gnu: wfmash: Enable test suite. 
* gnu/packages/bioinformatics.scm (wfmash)[arguments]: Don't disable
tests. Add custom 'check phase based on upstream's own CI tests.
[native-inputs]: Add samtools.
 2022-03-31 16:29:34 +03:00
Arun Isaac
1ca9d9e194
gnu: Add wfmash. 
* gnu/packages/bioinformatics.scm (wfmash): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 16:14:53 +03:00
Arun Isaac
8524904e08
gnu: atomic-queue: Do not look for boost when cross-compiling. 
* gnu/packages/cpp.scm (atomic-queue)[arguments]: When cross-compiling, add a
do-not-check-for-boost phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 16:14:53 +03:00
Arun Isaac
a83918837e
gnu: atomic-queue: Run tests correctly. 
* gnu/packages/cpp.scm (atomic-queue)[arguments]: In the check phase, run
tests instead of returning a function to run them.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 16:14:52 +03:00
Arun Isaac
7d331dd203
gnu: htslib: Add bzip2 and xz to inputs. 
htslib links to libbz2 from bzip2 and liblzma from xz. Therefore, bzip2 and xz
should be listed in inputs even though they are already present implicitly in
native-inputs. Else, cross-compilation will fail.

* gnu/packages/bioinformatics.scm (htslib)[inputs]: Add bzip2 and xz.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 16:14:52 +03:00
Arun Isaac
973ee1c91d
gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux. 
* gnu/packages/maths.scm (gsl)[arguments]: Force an autotools bootstrap
when cross-compiling to riscv64-linux.
[native-inputs]: Add autoconf, automake and libtool when cross-compiling
to riscv64-linux.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 16:14:52 +03:00
Ricardo Wurmus
a69a44bf59
gnu: python-loompy: Update to 3.0.7. 
* gnu/packages/bioinformatics.scm (python-loompy): Update to 3.0.7.
[arguments]: Add build phases 'fix-h5py-error and 'set-numba-cache-dir;
respect TESTS? argument in 'check phase.
[propagated-inputs]: Add python-click, python-numba, and
python-numpy-groupies.
 2022-03-31 14:37:58 +02:00
Ricardo Wurmus
38b2026515
gnu: Add python-numpy-groupies. 
* gnu/packages/python-science.scm (python-numpy-groupies): New variable.
 2022-03-31 14:37:58 +02:00
Arun Isaac
668d52a815
gnu: Add riscv-pk. 
* gnu/packages/virtualization.scm (riscv-pk): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 15:20:11 +03:00
Arun Isaac
9afad0c16e
gnu: spike: Substitute path to dtc instead of wrapping executables. 
* gnu/packages/virtualization.scm (spike)[arguments]: Delete the wrap-binary
phase. Add a configure-dtc-path phase that substitutes the absolute path to
dtc.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 15:20:08 +03:00
Ricardo Wurmus
dda555fead
gnu: python-anndata: Update to 0.8.0. 
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.8.0.
[arguments]: Remove build phase 'relax-dependency-requirements.
 2022-03-31 10:36:31 +02:00
Ricardo Wurmus
ea403bf290
gnu: python-h5py: Update to 3.6.0. 
* gnu/packages/python-xyz.scm (python-h5py): Update to 3.6.0.
[arguments]: Set HDF5_DIR variable instead of patching files.
 2022-03-31 10:36:31 +02:00
Ricardo Wurmus
967d5fd5c2
gnu: python2-h5py: Detach version and source from python-h5py. 
* gnu/packages/python-xyz.scm (python2-h5py): Override source and version
field.
(python-h5py)[properties]: Record python2-variant.
 2022-03-31 10:36:31 +02:00
Efraim Flashner
ecb2603046
gnu: weechat: Update to 3.5. 
* gnu/packages/irc.scm (weechat): Update to 3.5.
[inputs]: Add zstd:lib.
 2022-03-30 20:52:14 +03:00
Efraim Flashner
cb00a5fd85
gnu: msmtp: Update to 1.8.20. 
* gnu/packages/mail.scm (msmtp): Update to 1.8.20.
 2022-03-30 20:24:55 +03:00
Efraim Flashner
96a1d6b7a0
gnu: ncdu-2: Update to 2.1.1. 
* gnu/packages/ncdu.scm (ncdu-2): Update to 2.1.1.
 2022-03-30 19:58:29 +03:00
Efraim Flashner
693212087d
gnu: ncdu2: Set upstream name. 
* gnu/packages/ncdu.scm (ncdu-2)[properties]: New field.
 2022-03-30 19:58:29 +03:00
Ricardo Wurmus
1c2da66035
gnu: anonip: Update to 1.1.0. 
* gnu/packages/web.scm (anonip): Update to 1.1.0.
[source]: Fetch from git.
[arguments]: Run tests with pytest.
[native-inputs]: Add python-pytest and python-pytest-cov.
 2022-03-30 15:33:22 +02:00
Mathieu Othacehe
643d05eb20
lsof: Prevent mass-rebuild. 
* gnu/packages/lsof.scm (lsof): Set LINUX_CONF_CC variable only when
cross-compiling.
 2022-03-30 14:40:04 +02:00
Brian Kubisiak
2387adf600
gnu: lbzip2: Fix cross-compilation. 
* gnu/packages/compression.scm (lbzip2)[arguments]: Search (or
native-inputs inputs) for gnulib-tool.py.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-30 12:34:36 +02:00
Brian Kubisiak
a006b7d347
gnu: lsof: Fix cross-compilation. 
* gnu/packages/lsof (lsof)[arguments]: Add LINUX_CONF_CC environment
variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-30 11:50:58 +02:00
Leo Famulari
457999ce36
gnu: Mutt: Update to 2.2.2. 
* gnu/packages/mail.scm (mutt): Update to 2.2.2.
 2022-03-29 23:33:07 -04:00
Leo Famulari
1d62b15dc1
gnu: linux-libre 4.9: Update to 4.9.309. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.309.
(linux-libre-4.9-pristine-source): Update hash.
 2022-03-29 13:40:14 -04:00
Leo Famulari
555b2b0bd0
gnu: linux-libre 4.14: Update to 4.14.274. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.274.
(linux-libre-4.14-pristine-source): Update hash.
 2022-03-29 13:40:14 -04:00
Leo Famulari
ef57c59046
gnu: linux-libre 4.19: Update to 4.19.237. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.237.
(linux-libre-4.19-pristine-source): Update hash.
 2022-03-29 13:40:14 -04:00
Leo Famulari
5721cb284a
gnu: linux-libre 5.4: Update to 5.4.188. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.188.
(linux-libre-5.4-pristine-source): Update hash.
 2022-03-29 13:40:14 -04:00
Leo Famulari
ded6beb9a7
gnu: linux-libre 5.10: Update to 5.10.109. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.109.
(linux-libre-5.10-pristine-source): Update hash.
 2022-03-29 13:40:13 -04:00
Leo Famulari
916b333e86
gnu: linux-libre 5.15: Update to 5.15.32. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.32.
(linux-libre-5.15-pristine-source): Update hash.
 2022-03-29 13:40:13 -04:00
Leo Famulari
c2a141156e
gnu: linux-libre 5.16: Update to 5.16.18. 
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.18.
(linux-libre-5.16-pristine-source): Update hash.
 2022-03-29 13:40:13 -04:00
Leo Famulari
89af5cd2a9
gnu: linux-libre 5.17: Update to 5.17.1. 
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.1.
(linux-libre-5.17-pristine-source): Update hash.
 2022-03-29 13:40:13 -04:00
cage
4b8500e7cb
gnu: gmid: Update to 1.8.2. 
* gnu/packages/web.scm (gmid): Update to 1.8.2.
[native-inputs]: Remove which.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-29 12:53:26 -04:00
Kyle Meyer
6c317e02ee
gnu: git-annex: Update to 10.20220322. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20220322.
[inputs]: Add ghc-http-client-restricted.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-29 12:53:26 -04:00
Kyle Meyer
e59069fe2b
gnu: Add ghc-http-client-restricted. 
* gnu/packages/haskell-web.scm (ghc-http-client-restricted): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-29 12:53:26 -04:00
Kyle Meyer
f40c72327e
gnu: ghc-http-client-tls: Update to 0.3.6.1. 
* gnu/packages/haskell-web.scm (ghc-http-client-tls): Update to 0.3.6.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-29 12:53:26 -04:00
Kyle Meyer
d2984784fd
gnu: ghc-http-client: Update to 0.7.11. 
* gnu/packages/haskell-web.scm (ghc-http-client): Update to 0.7.11.
[inputs]: Add ghc-iproute.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-29 12:53:25 -04:00
Mădălin Ionel Patrașcu
591007f7d1
gnu: r-signac: Update to 1.6.0-2.458e647. 
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0-2.458e647.
[propagated-inputs]: Remove r-annotationfilter, r-biocgenerics, r-biostrings,
r-biovizbase, and r-ggbio; add r-qlcmatrix and r-tidyselect.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-03-29 17:40:17 +02:00
Ricardo Wurmus
977a33139e
gnu: plink-ng: Update to 2.00a3-20220315. 
* gnu/packages/bioinformatics.scm (plink-ng): Update to 2.00a3-20220315.
 2022-03-29 15:33:55 +02:00
Mădălin Ionel Patrașcu
d710f01957
gnu: Add r-cytobackbone. 
* gnu/packages/bioinformatics.scm (r-cytobackbone): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-03-29 14:03:44 +02:00
Ricardo Wurmus
6d5964e804
gnu: pigx-sars-cov2-ww: Update to 0.0.5. 
* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.5.
[source]: Remove patch.
[arguments]: Disable tests.
* gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-03-29 13:52:16 +02:00
Ricardo Wurmus
847acc3206
gnu: pigx-rnaseq: Update to 0.0.20. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.20.
[source]: Remove patch.
[inputs]: Add megadepth.
* gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-03-29 13:52:16 +02:00
Efraim Flashner
3b0c9e4c20
gnu: kpeoplevcard: Use mirror URI. 
* gnu/packages/kde-pim.scm (kpeoplevcard)[source]: Use kde mirror URI.
 2022-03-29 14:43:21 +03:00
Efraim Flashner
d9710380a4
gnu: pulseaudio-qt: Use mirror URI. 
* gnu/packages/kde-frameworks.scm (pulseaudio-qt)[source]: Use kde
mirror URI.
 2022-03-29 14:43:20 +03:00
Luis Henrique Gomes Higino
53b04339fe
gnu: neovim: Update to 0.6.1. 
* gnu/packages/vim.scm (neovim): Update to 0.6.1.

Build neovim with LuaJIT in the supported platforms.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:56:52 +02:00
Luis Henrique Gomes Higino
1e2a25579c
gnu: Add tree-sitter. 
* gnu/packages/text-editors.scm (tree-sitter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:56:49 +02:00
Feng Shu
5cabe24e56
gnu: Add xfce4-dict. 
* gnu/packages/xfce.scm (xfce4-dict): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:36:15 +02:00
jgart
ddfebdab86
gnu: poezio: Update to 0.13.2. 
* gnu/packages/messaging.scm (poezio): Update to 0.13.2.
[arguments]: Remove trailing boolean and use new style.
[inputs]: Remove unused python input.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:30:25 +02:00
Philippe SWARTVAGHER
39b27a17ec
gnu: openmpi: Update to 4.1.2 
* gnu/packages/mpi.scm (openmpi): Update to 4.1.2

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-29 11:27:21 +02:00
Ludovic Courtès
2ae2a15b07
gnu: slurm: Install libpmi2. 
* gnu/packages/parallel.scm (slurm)[source](snippet): Let PMI2 through.
[arguments]: In phase 'install-libpmi', install "contribs/pmi2".
[license]: Add 'non-copyleft'.
 2022-03-29 11:26:58 +02:00
jgart
779acb0ba1
gnu: mercury: Remove trailing #T from phases and snippet. 
* gnu/packages/mercury.scm (mercury)[arguments]<#:phases>: Remove trailing #T.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 11:17:46 +02:00
jgart
c116376542
gnu: python-livereload: Update to 2.6.3. 
* gnu/packages/python-web.scm (python-livereload): Update to 2.6.3.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:59:07 +02:00
jgart
6d0d176580
gnu: solfege: Remove trailing booleans. 
* gnu/packages/music.scm (solfege): Remove trailing booleans.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:56:33 +02:00
jgart
a1c11cc652
gnu: python-port-for: Remove trailing boolean. 
* gnu/packages/python-web.scm (python-port-for)[arguments]: Remove trailing
boolean from lambda function.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:55:02 +02:00
Brian Kubisiak
db7b8d1c9a
gnu: dnsmasq: Fix cross-compilation. 
* gnu/packages/dns.scm (dnsmasq)[arguments]: Use PKG-CONFIG-FOR-TARGET.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-03-29 10:52:45 +02:00
Efraim Flashner
b103d8e490
gnu: munge: Fix cross-compiling. 
* gnu/packages/admin.scm (munge)[arguments]: Add configure-flag to set
path to libgcrypt prefix.  Add configure flags when cross-compiling to
assume support for pipes.
 2022-03-28 21:34:09 +03:00
Efraim Flashner
bf0389a380
gnu: freeipmi: Fix cross-compiling. 
* gnu/packages/freeipmi.scm (freeipmi)[arguments]: Assume support for
/dev/random and /dev/urandom when cross compiling.
 2022-03-28 21:34:08 +03:00
Efraim Flashner
f24ddb1e90
gnu: sdsl-lite: Adjust inputs. 
* gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Move
libdivsufsort from here ...
[propagated-inputs]: ... to here.
 2022-03-28 21:34:08 +03:00
Efraim Flashner
abd8286480
gnu: rdma-core: Fix cross-compiling. 
* gnu/packages/linux.scm (rdma-core)[arguments]: Add configure-flag when
cross-compiling to find pkg-config.
 2022-03-28 21:34:04 +03:00
Maxim Cournoyer
e91a525858
gnu: ansible: Use GUIX_PYTHONPATH in the search path specification. 
* gnu/packages/admin.scm (ansible)[native-search-paths]: Use GUIX_PYTHONPATH.
 2022-03-28 13:52:45 -04:00
Maxim Cournoyer
7d136be00f
gnu: openboardview: Do not recursively clone source. 
This is a follow up to commit ad85ca0977.

* gnu/packages/electronics.scm (openboardview)
[source]<git-reference>: Delete the recursive? field.
 2022-03-28 13:52:45 -04:00
Mădălin Ionel Patrașcu
0a5c2816ea
gnu: Add r-cycombine. 
* gnu/packages/bioconductor.scm (r-cycombine): New variable.
 2022-03-28 17:04:29 +02:00
Ricardo Wurmus
8e994ea512
gnu: Add r-homologene. 
* gnu/packages/cran.scm (r-homologene): New variable.
 2022-03-28 15:22:49 +02:00
Efraim Flashner
738da660ff
gnu: zig: Remove unneeded patch. 
* gnu/packages/zig.scm (zig)[source]: Remove one patch.
* gnu/packages/patches/zig-disable-libc-note-test.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2022-03-28 10:31:54 +03:00
Efraim Flashner
58bc976b5b
gnu: gitolite: Add bash-minimal. 
* gnu/packages/version-control.scm (gitolite)[arguments]: Remove
trailing #t.
[inputs]: Add bash-minimal.
 2022-03-28 10:07:02 +03:00
Efraim Flashner
6d780dc8bf
gnu: gitolite: Don't hardcode path to svnserve. 
* gnu/packages/version-control.scm (gitolite)[arguments]: Adjust custom
'patch-source phase to search for svnserve in $PATH.
 2022-03-28 10:04:03 +03:00
Pier-Hugues Pellerin
fff27ded10
gnu: Go: Update to 1.17.8 [security fixes]. 
Go 1.17.8 (released 2022-03-03) includes a security fix to the regexp/syntax
package[0], as well as bug fixes to the compiler, runtime, the go command, and
the crypto/x509 and net packages.  See the Go 1.17.8 milestone[1] on the
upstream issue tracker for details.

[0] CVE-2022-24921 and https://go.dev/issue/51112.
[1] https://github.com/golang/go/issues?q=milestone%3AGo1.17.8+label%3ACherryPickApproved

* gnu/packages/golang.scm (go-1.17): Update to 1.17.8.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-27 23:11:18 -04:00
Pier-Hugues Pellerin
8731ed8eae
gnu: Go 1.16: Update to 1.16.15 [security fixes]. 
Go 1.16.15 (released 2022-03-03) includes a security fix to the regexp/syntax
package[0], as well as bug fixes to the compiler, runtime, the go command, and
the net package. See the Go 1.16.15 milestone[1] on the upstream issue tracker
for details.

[0] CVE-2022-24921 and https://go.dev/issue/51112.
[2] https://github.com/golang/go/issues?q=milestone%3AGo1.16.15+label%3ACherryPickApproved

* gnu/packages/golang.scm (go-1.16): Update to 1.16.15.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-27 23:11:18 -04:00
Liliana Marie Prikler
2344fb1097
gnu: mcomix: Install messages. 
* gnu/packages/image-viewer.scm (mcomix)[install-data]: Also install messages
subdirectory.
 2022-03-27 09:49:02 +02:00
Leo Famulari
943d4b775b
gnu: linux-libre: Add linux-libre 5.17. 
* gnu/packages/linux.scm (linux-libre-5.17-version,
linux-libre-5.17-gnu-revision, deblob-scripts-5.17,
linux-libre-5.17-pristine-source, linux-libre-5.17-source,
linux-libre-headers-5.17, linux-libre-5.17): New variables.
* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Add them.
 2022-03-26 17:59:57 -04:00
Leo Famulari
50ccffb89e
gnu: Borg: Update to 1.2.0. 
* gnu/packages/backup.scm (borg): Update to 1.2.0.
[source]: Adjust the list of Cython files to rebuild. Remove an obsolete
substitution. Delete the bundled xxhash. Blake2 is no longer bundled.
[native-inputs]: Add python-dateutil.
[inputs]: Add xxhash. Add python-msgpack-1.2. Remove libb2.
[arguments]: Export BORG_LIBXXHASH_PREFIX to ensure the build script can find
xxhash. Adjust the list of skipped tests and make the custom 'check' phase honor
tests?. Install some more documentation.
 2022-03-26 17:53:37 -04:00
Leo Famulari
b9e01b7516
gnu: Add python-msgpack-1.0.2. 
* gnu/packages/python-xyz.scm (python-msgpack-1.0.2): New variable.
 2022-03-26 17:53:30 -04:00
Liliana Marie Prikler
ff4585d147
gnu: mcomix: Wrap missing paths. 
* gnu/packages/image-viewers.scm (mcomix)[inputs]: Add gtk+.
[arguments]<#:imported-modules,#:modules>: New arguments.
<#:phases>: Add ‘glib-or-gtk-wrap’ and ‘gi-wrap’.
 2022-03-26 08:52:40 +01:00
Liliana Marie Prikler
8358ad36c6
gnu: mcomix: Update to 2.0.1. 
* gnu/packages/image-viewers.scm (mcomix): Update to 2.0.1.
[source]: Use sourceforge once again.
[inputs]: Add ‘python’.
[arguments]: Convert to a list of G-Expressions.
<#:tests?>: Drop.
<#:phases>: Rename ‘configure’ to ‘patch-sources’.  Also fix an assertion
error in "mcomix/image_tools.py".
No longer replace ‘build’ or ‘install’.  Add ‘install-data’ phase after
‘install’.  Use (this-package-input) to refer to the python input.
 2022-03-26 08:52:40 +01:00
Feng Shu
fc9ac2ac64
gnu: Add xfdashboard. 
* gnu/packages/xfce.scm (xfdashboard): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-03-26 11:39:00 +08:00
fesoj000
cabda1197e
gnu: nftables: Enable json output. 
* gnu/packages/linux.scm (nftables)[inputs]: Add jansson.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00
fesoj000
32a5a1cc96
gnu: nftables: Enable build of manpages. 
* gnu/packages/linux.scm (nftables)[native-inputs]: Add docbook2x.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00
Feng Shu
1f46534646
gnu: Add gigolo. 
* gnu/packages/xfce.scm (gigolo): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00
Imran Iqbal
f2bbe73b81
gnu: Add curlie. 
* gnu/packages/curl.scm (curlie): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00
raingloom
72d2aeacaa
gnu: akku: Update to 1.1.0. 
* gnu/packages/package-management.scm (akku): Update to 1.1.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00
Philippe SWARTVAGHER
2f7a6eaec9
gnu: hwloc: Update to 2.7.1. 
* gnu/packages/mpi.scm (hwloc-2): Update to 2.7.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-03-25 12:21:23 +01:00