Commit Graph

4199 Commits

Author SHA1 Message Date
Ricardo Wurmus
febe8360c3
gnu: r-scuttle: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
8dc03857a6
gnu: r-singler: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-singler): Update to 2.2.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
b0a6411b85
gnu: r-singlecellexperiment: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.22.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
09ada1eb1e
gnu: r-chromvar: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
0609a92c0b
gnu: r-motifmatchr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.22.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
6263d39069
gnu: r-maftools: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.16.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
99c001303d
gnu: r-tfbstools: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.38.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
5ab3d66ffc
gnu: r-cner: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-cner): Update to 1.36.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
b9b6c29a75
gnu: r-beadarraysnp: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-beadarraysnp): Update to 1.66.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
e76467b72c
gnu: r-beachmat: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.16.0.
2023-04-29 20:28:06 +02:00
Ricardo Wurmus
f482bb1256
gnu: r-rhdf5lib: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.22.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
582dac2949
gnu: r-hdf5array: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
143b70c92b
gnu: r-hitc: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.44.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
765b41564a
gnu: r-fithic: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.26.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
8866d47bce
gnu: r-fishpond: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.0.
[inputs]: Remove zlib.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
85bc989a66
gnu: r-rgraphviz: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.44.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2e81140c18
gnu: r-s4vectors: Update to 0.38.0.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ed6d919ef0
gnu: r-preprocesscore: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ae8956bbc8
gnu: r-icens: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-icens): Update to 1.72.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ebd0bdd84c
gnu: r-m3c: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.22.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
aff09ecb05
gnu: r-rgreat: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.2.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
bd1b41e8d1
gnu: r-pcatools: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.12.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
f2ce4a037f
gnu: r-biodist: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.72.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2f1c5f361f
gnu: r-biocworkflowtools: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.26.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
37de521f22
gnu: r-biocset: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.14.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
72ba2d8f48
gnu: r-biocpkgtools: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.18.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
8f9bd84fd9
gnu: r-biocor: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.24.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d63b92465b
gnu: r-bioconcotk: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.20.0.
[propagated-inputs]: Add r-mass.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
94ab8db2d7
gnu: r-multiassayexperiment: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.26.0.
[native-inputs]: Add r-r-rsp.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
621526d5e3
gnu: r-grohmm: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.34.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
29f1477229
gnu: r-experimenthub: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.8.0.
[propagated-inputs]: Remove r-curl.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d0682c7c04
gnu: r-biocviews: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.68.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
0c2009a1b0
gnu: r-biocstyle: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.28.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d277f69643
gnu: r-biocgraph: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.62.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
b5133a0dc3
gnu: r-bioccheck: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.0.
[propagated-inputs]: Add r-biocfilecache.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
81de52f013
gnu: r-biocbaseutils: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.2.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
39defa2968
gnu: r-ebarrays: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.64.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
f7e7bb2007
gnu: r-reactomepa: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.44.0.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2474b005cd
gnu: r-graphite: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.46.0.
[native-inputs]: Add r-r-rsp.
2023-04-29 20:28:05 +02:00
Ricardo Wurmus
b6350013f8
gnu: r-biobroom: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.32.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9adef62a5b
gnu: r-bioassayr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.38.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
29944820e1
gnu: r-fmcsr: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.42.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
89fce342bb
gnu: r-chemminer: Update to 3.52.0.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.52.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
02451fb098
gnu: r-bigpint: Update to 1.15.0.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.15.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
d3f1ba4bf2
gnu: r-biggr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.36.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c0b7b4ed00
gnu: r-hyperdraw: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.52.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
7f03f14e5f
gnu: r-hypergraph: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.72.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c6354be8c6
gnu: r-rsbml: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.58.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
7d2852ed0e
gnu: r-bifet: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.20.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f273e6f729
gnu: r-bicare: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.58.0.
[propagated-inputs]: Add r-go-db.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
807271f5b5
gnu: r-bhc: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.52.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
90fc4b4a51
gnu: r-bgx: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.66.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
ee4f843e46
gnu: r-bgmix: Update to 1.59.0.
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.59.0.
[arguments]: Add build phase 'avoid-naming-conflict.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
e8d5475045
gnu: r-acde: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-acde): Update to 1.30.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
89a1bc74ce
gnu: r-acme: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-acme): Update to 2.56.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f09fd77618
gnu: r-acgh: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.78.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9b4ebaec75
gnu: r-ace: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-ace): Update to 1.18.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
b212b9ca62
gnu: r-universalmotif: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.18.0.
[propagated-inputs]: Add r-matrixgenerics.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
47b35d3459
gnu: r-unifiedwmwqpcr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.36.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f7c2c248d5
gnu: r-htqpcr: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.54.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
b352e03d83
gnu: r-variancepartition: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.30.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c1b48012e6
gnu: r-variantfiltering: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.36.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9340b270f7
gnu: r-tilingarray: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.78.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
d04f67f677
gnu: r-wavcluster: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.34.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
77d55ff8e6
gnu: r-reqon: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.46.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
5d99ad4da4
gnu: r-seqbias: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.48.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
3dd7d3bf9e
gnu: r-bigmelon: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.26.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
2d821f86cb
gnu: r-gdsfmt: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.36.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
217c1275ac
gnu: r-watermelon: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.6.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
69ed0c145f
gnu: r-roc: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.76.0.
2023-04-29 20:28:04 +02:00
Ricardo Wurmus
733b8a2e0d
gnu: r-genie3: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.22.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
a6361a752d
gnu: r-circrnaprofiler: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.14.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
52fd33e996
gnu: r-cicero: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.18.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
3481a56a13
gnu: r-chicago: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.28.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
44aeef066d
gnu: r-rcistarget: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.20.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c5aba0be7c
gnu: r-depecher: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.16.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
043d2dd022
gnu: r-mixomics: Update to 6.24.0.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.24.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
afb011a051
gnu: r-flowsom: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.8.0.
[propagated-inputs]: Remove r-cytoml, r-flowworkspace, r-ggpointdensity, r-ggrepel,
r-pheatmap, r-rcolorbrewer, and r-scattermore.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
974dba4509
gnu: r-cytoml: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.12.0.
[inputs]: Remove zlib.
[propagated-inputs]: Remove r-base64enc, r-corpcor, r-lattice, r-plyr, r-rcpp,
r-rcpparmadillo, r-rcppparallel, r-runit, and r-xml2; add r-cpp11.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
43b33d7992
gnu: r-opencyto: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
fadfa9cc60
gnu: r-flowstats: Update to 4.12.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c31ae38d58
gnu: r-flowworkspace: Update to 4.12.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
2cf5e0cb7a
gnu: r-rprotobuflib: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
9eade45bfb
gnu: r-flowclust: Update to 3.38.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.38.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
ea4adaa7e8
gnu: r-flowviz: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.64.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
c83337a943
gnu: r-ggcyto: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.28.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
557cbfd68c
gnu: r-ncdfflow: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.46.0.
[propagated-inputs]: Remove r-rcpp and r-rcpparmadillo; add r-cpp11.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
e346747a7b
gnu: r-flowmeans: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.60.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
0b653ec7f9
gnu: r-flowcore: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
643bf1a6c7
gnu: r-cytolib: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.12.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
bff572d037
gnu: r-consensusclusterplus: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.64.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
52719d2995
gnu: r-flowai: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-flowai): Update to 1.30.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
f730a027c8
gnu: r-rsubread: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.14.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
ec0fc09a26
gnu: r-annotatr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.26.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
96ae714e28
gnu: r-biosigner: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.28.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
bd322e08de
gnu: r-ropls: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.32.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
74591bcb64
gnu: r-multidataset: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.28.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
addd78c953
gnu: r-birewire: Update to 3.32.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.32.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
29649ada9e
gnu: r-rqc: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.34.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
8d3676e217
gnu: r-quasr: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.40.0.
2023-04-29 20:28:03 +02:00
Ricardo Wurmus
b8c4548ac0
gnu: r-rhisat2: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.16.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
3a2a833691
gnu: r-sgseq: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.34.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
e438a5c9d9
gnu: r-rbowtie: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.40.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
c91f3192bc
gnu: r-iclusterplus: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.36.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
277f476f60
gnu: r-biocfilecache: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.8.0.
[propagated-inputs]: Remove r-rappdirs.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
2ee15aee56
gnu: r-arrmnormalization: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.40.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
8f88c0243c
gnu: r-progeny: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.22.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
0bffa9d7e7
gnu: r-rbowtie2: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.6.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
5c7824bffa
gnu: r-zfpkm: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.22.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
8f89dba276
gnu: r-zinbwave: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.22.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
f8add36afb
gnu: r-webbioc: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.72.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
58a016c5b2
gnu: r-widgettools: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.78.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
f86f2584f9
gnu: r-wiggleplotr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.24.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
a8a248b0c8
gnu: r-wrench: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.18.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
1ad2255a5b
gnu: r-wppi: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.8.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
dd19f928e7
gnu: r-xcms: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.22.0.
[propagated-inputs]: Add r-multtest.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
48ad54e1c0
gnu: r-massspecwavelet: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.66.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
88acb3def5
gnu: r-roar: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.36.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
4c26b3049a
gnu: r-yarn: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.26.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
041dbd604b
gnu: r-quantro: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.34.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
48e5c920d2
gnu: r-gcrma: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.72.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
a88af8976b
gnu: r-yapsa: Update to 1.25.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.25.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
ef2b8e94bf
gnu: r-somaticsignatures: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.36.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
46158e258b
gnu: r-gtrellis: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.32.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
7cbc47eadd
gnu: r-yamss: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.26.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
6f5209f1a9
gnu: r-ebimage: Update to 4.42.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.42.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
ba31e05d75
gnu: r-aucell: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.22.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
bade0db654
gnu: r-allelicimbalance: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.38.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
ecc70c623f
gnu: r-annotationtools: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.74.0.
2023-04-29 20:28:02 +02:00
Ricardo Wurmus
c901ed6127
gnu: r-gofuncr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.20.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
88362fc7ff
gnu: r-atacseqqc: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.24.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
98e54bf5ca
gnu: r-genomicscores: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.12.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
46b87ee7e7
gnu: r-bionetstat: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.20.0.
[source]: Delete minified JavaScript file.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add esbuild and r-rmarkdown.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
1d91760996
gnu: r-motifstack: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.44.0.
[source]: Delete minified JavaScript file.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add esbuild and sources for d3.v4.js.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
dfd9bb7b1a
gnu: r-motifbreakr: Update to 2.13.7.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.13.7.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
cee1f0ae56
gnu: r-motifdb: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.42.0.
[native-inputs]: Add r-formatr, r-markdown, and r-rmarkdown.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
4d36726a8c
gnu: r-rgadem: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.48.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d4f475a68b
gnu: r-bacon: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.28.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
17f1c0e530
gnu: r-abseqr: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.18.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
6fbb674db9
gnu: r-a4: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.48.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
f9f9c3f64e
gnu: r-a4base: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.48.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
775bb851d1
gnu: r-a4reporting: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.48.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
71118c1b26
gnu: r-a4preproc: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.48.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d2e98617e8
gnu: r-a4classif: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.48.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d596e1db96
gnu: r-a4core: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.48.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
ae28601ad1
gnu: r-annaffy: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.72.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
34b3010a74
gnu: r-mlinterfaces: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.80.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
46dd98333f
gnu: r-clusterexperiment: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.20.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
e2484544a5
gnu: r-clusterprofiler: Update to 4.8.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
e878a97766
gnu: r-enrichplot: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.20.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
96575cde15
gnu: r-dose: Update to 3.26.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
d85403b837
gnu: r-fgsea: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.26.0.
[propagated-inputs]: Add r-scales.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
490e8a9004
gnu: r-fcscan: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.14.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
2cbb845e7d
gnu: r-anota: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.48.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
288da213c8
gnu: r-gosemsim: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.26.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
f40f9d0bb9
gnu: r-heatplus: Update to 3.8.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.8.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
2a6a1b55a1
gnu: r-varianttools: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.42.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
419e701243
gnu: r-tradeseq: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.14.0.
2023-04-29 20:28:01 +02:00
Ricardo Wurmus
7f77509696
gnu: r-ioniser: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.24.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
0ecfa451a0
gnu: r-linnorm: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
3ae9922530
gnu: r-lumi: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.52.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ccc6ebc63f
gnu: r-methylumi: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.46.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
596dec968e
gnu: r-minfi: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.46.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
44602f4a65
gnu: r-milor: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-milor): Update to 1.8.1.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
91758952d4
gnu: r-microbiome: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.22.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
957cc37181
gnu: r-mia: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.8.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
8d0843d3eb
gnu: r-bumphunter: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.42.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
73b17e2b61
gnu: r-siggenes: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.74.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ea03105d25
gnu: r-illuminaio: Update to 0.42.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.42.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
98da84a5a6
gnu: r-geoquery: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.68.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
0410b30ba1
gnu: r-scone: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.24.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
74aa56e71f
gnu: r-scdd: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.24.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
2e1495c9f5
gnu: r-noiseq: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.44.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
196e329b69
gnu: r-monocle: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.28.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
6a313f06bf
gnu: r-mast: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.26.0.
[propagated-inputs]: Add r-matrix.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
cffec95040
gnu: r-batchelor: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.16.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
1f44f80239
gnu: r-residualmatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.10.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
c8315e500c
gnu: r-icobra: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.28.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
6c7f4296b9
gnu: r-ihw: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.28.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
cb5b5722bd
gnu: r-lpsymphony: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ad80b3fa5e
gnu: r-karyoploter: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.26.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
ff78701399
gnu: r-ebseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.40.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
b861c08de6
gnu: r-dnacopy: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
559ed048b6
gnu: r-chipexoqual: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.24.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
1f83062449
gnu: r-savr: Update to 1.37.0.
* gnu/packages/bioconductor.scm (r-savr): Update to 1.37.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
3531182e1e
gnu: r-destiny: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.14.0.
[native-inputs]: Remove r-nbconvertr.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
6fd03125bf
gnu: r-biocsingular: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.16.0.
2023-04-29 20:28:00 +02:00
Ricardo Wurmus
959fae1d39
gnu: r-metapod: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.8.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
9886b96ef8
gnu: r-ggtree: Update to 3.8.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.8.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
ea5a5623b1
gnu: r-treesummarizedexperiment: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.8.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
0a1fbf006e
gnu: r-treeio: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.0.
[propagated-inputs]: Add r-cli.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
e176812b9f
gnu: r-scaledmatrix: Update to 1.7.1.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.7.1.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
f514cc8ad7
gnu: r-biocneighbors: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.18.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
12c8b61d67
gnu: r-ruvseq: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.34.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
e88fa28e21
gnu: r-dnabarcodes: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.30.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
89ee68eaf2
gnu: r-inspect: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.30.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
25b2a51612
gnu: r-plgem: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.72.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
998baf7238
gnu: r-rots: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.28.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
368dd4853e
gnu: r-glmgampoi: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.0.
[propagated-inputs]: Add r-vctrs.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
d2eda77f40
gnu: r-goseq: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.52.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
330e1d4053
gnu: r-ctc: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.74.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
f19e919ff0
gnu: r-genomicinteractions: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.34.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
c163509202
gnu: r-interactionset: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.28.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
f76db3966e
gnu: r-riboprofiling: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.30.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
116c7b6aeb
gnu: r-chipcomp: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.30.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
cbf2423878
gnu: r-qdnaseq: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.36.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
bed7bcd8f5
gnu: r-cghcall: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.62.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
a468586541
gnu: r-cghbase: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.60.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
3c7a962f03
gnu: r-marray: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.78.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
4285416811
gnu: r-matrixgenerics: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
1e7943fe99
gnu: r-chippeakanno: Update to 3.34.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.34.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
e3732dcda4
gnu: r-pepsnmr: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-pepsnmr): Update to 1.18.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
54614fc9d5
gnu: r-graph: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.78.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
c0d21bfe64
gnu: r-multtest: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.56.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
e7bc7ec54f
gnu: r-mbkmeans: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.16.0.
2023-04-29 20:27:59 +02:00
Ricardo Wurmus
15daabb22f
gnu: r-diffbind: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.10.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
4985c9601e
gnu: r-greylistchip: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.32.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
ef2994f256
gnu: r-apeglm: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.22.0.
[native-inputs]: Add r-rmarkdown.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
df0d0504fb
gnu: r-qvalue: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.32.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
4d031b58f1
gnu: r-quantsmooth: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-quantsmooth): Update to 1.66.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
45e8cd7612
gnu: r-oligo: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
eef6764047
gnu: r-oligoclasses: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.62.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
adfdd8e86e
gnu: r-geneplotter: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.78.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
e82e8329f5
gnu: r-zellkonverter: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.10.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
61b9cc9b50
gnu: r-zlibbioc: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.46.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
d9a9bcf5c6
gnu: r-xvector: Update to 0.40.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.40.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
ed59644ba0
gnu: r-xmapbridge: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.58.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
753beb909f
gnu: r-xina: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-xina): Update to 1.18.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
681a784204
gnu: r-vsn: Update to 3.68.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.68.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
7a6fa454aa
gnu: r-variantannotation: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.46.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
998c7242c2
gnu: r-tximport: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.28.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
ea8a5b5d01
gnu: r-topgo: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.52.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
221c9b3914
gnu: r-systempiper: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
ec18aab140
gnu: r-sva: Update to 3.48.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.48.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
77e5cffb35
gnu: r-summarizedexperiment: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
028e3d5219
gnu: r-structuralvariantannotation: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.16.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
08ca51d2e0
gnu: r-stringdb: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.12.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
b54be030aa
gnu: r-stager: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.22.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
5698bf6fed
gnu: r-slingshot: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.8.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
15caa80904
gnu: r-scds: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scds): Update to 1.16.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
93c0b52f6a
gnu: r-trajectoryutils: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.8.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
a48cb51ed0
gnu: r-transcriptr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.28.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
b28d21fff2
gnu: r-simplifyenrichment: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.10.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
8db5bea2ba
gnu: r-shortread: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.58.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
7c53819208
gnu: r-shinymethyl: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.36.0.
[propagated-inputs]: Remove r-illuminahumanmethylation450kmanifest and r-matrixstats; add
r-biobase, r-htmltools, and r-matrixgenerics.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
6264a7cca0
gnu: r-seqpattern: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.32.0.
2023-04-29 20:27:58 +02:00
Ricardo Wurmus
bbdb686878
gnu: r-seqlogo: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.66.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
8e9d0d590f
gnu: r-scry: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.12.0.
[propagated-inputs]: Remove r-hdf5array.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
3cd53df25a
gnu: r-scmap: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.0.
2023-04-29 20:27:57 +02:00
Ricardo Wurmus
70433802aa
gnu: r-scdblfinder: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.14.0.
2023-04-29 20:27:57 +02:00