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4199 Commits

Author SHA1 Message Date
Ricardo Wurmus
4f7efc8db9
gnu: r-biocviews: Sort inputs. 
* gnu/packages/bioconductor.scm (r-biocviews)[propagated-inputs]: Sort them.
 2023-06-02 12:51:15 +02:00
Ricardo Wurmus
52546a4512
gnu: r-biocparallel: Sort inputs. 
* gnu/packages/bioconductor.scm (r-biocparallel)[propagated-inputs]: Sort
them.
 2023-06-02 12:50:47 +02:00
Ricardo Wurmus
93804e978f
gnu: r-mbecs: Fix indentation. 
* gnu/packages/bioconductor.scm (r-mbecs)[arguments]: Adjust indentation and
spelling of comment.
 2023-06-01 09:21:57 +02:00
Mădălin Ionel Patrașcu
10d3f8aa7b
gnu: Add r-mbecs. 
* gnu/packages/bioconductor.scm (r-mbecs): New variable.
 2023-06-01 09:15:26 +02:00
Ricardo Wurmus
aae17d3efa
gnu: r-abn: Update to 2.7-5. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-5.
[native-inputs]: Add r-r-rsp.
 2023-05-31 18:19:53 +02:00
Ricardo Wurmus
85a70cbde6
gnu: r-ggpicrust2: Update to 1.6.5. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.6.5.
 2023-05-31 18:19:53 +02:00
Ricardo Wurmus
9dcb09076d
gnu: r-valr: Update to 0.6.8. 
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.8.
 2023-05-31 18:19:53 +02:00
Mădălin Ionel Patrașcu
9d05f9a9f5
gnu: Add r-dropletutils. 
* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
 2023-05-12 09:36:26 +02:00
Ricardo Wurmus
7e421c1f5a
gnu: r-scran: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
0880f325b7
gnu: r-scuttle: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
8c7ddd3a44
gnu: r-chromvar: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
d850b72346
gnu: r-hdf5array: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.1.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
3bdd6fb256
gnu: r-s4vectors: Update to 0.38.1. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
da8638facb
gnu: r-preprocesscore: Update to 1.62.1. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
6b2a0aab19
gnu: r-iclusterplus: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.36.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c96ebf4cf9
gnu: r-clusterprofiler: Update to 4.8.1. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
f7642f34d0
gnu: r-dose: Update to 3.26.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.26.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
4228100215
gnu: r-linnorm: Update to 2.24.1. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.24.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c6c69d4cc6
gnu: r-dnacopy: Update to 1.74.1. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c846a694a7
gnu: r-scaledmatrix: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.8.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
95d5a918a2
gnu: r-glmgampoi: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
75869a8a94
gnu: r-oligo: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
a4b04c06ab
gnu: r-summarizedexperiment: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.1.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
c70787f552
gnu: r-scmap: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
0fd93c81be
gnu: r-rhdf5filters: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
4b7a06b839
gnu: r-pcaexplorer: Update to 2.26.1. 
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.1.
 2023-05-09 15:24:15 +02:00
Ricardo Wurmus
37f44c278f
gnu: r-impute: Update to 1.74.1. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
ef3ce37eeb
gnu: r-genefilter: Update to 1.82.1. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
56524dc465
gnu: r-edger: Update to 3.42.2. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.2.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
d9d920403a
gnu: r-deseq2: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7a9e68f103
gnu: r-biocparallel: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
69e954bb0a
gnu: r-annotationdbi: Update to 1.62.1. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
931ac0735f
gnu: r-densvis: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
06b903963c
gnu: r-delayedarray: Update to 0.26.2. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.2.
[propagated-inputs]: Add r-s4arrays.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
01faf51999
gnu: r-bandits: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
13dde61328
gnu: r-bambu: Update to 3.2.2. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.2.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
6401f048cf
gnu: r-amplican: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.22.1.
[propagated-inputs]: Remove r-clustercrit; add r-cluster.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
0861bca905
gnu: r-affyplm: Update to 1.76.1. 
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.76.1.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
7a58dc01d3
gnu: Add r-s4arrays. 
* gnu/packages/bioconductor.scm (r-s4arrays): New variable.
 2023-05-09 15:24:14 +02:00
Ricardo Wurmus
6aa299aa1c
gnu: r-ggpicrust2: Update to 1.6.3. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.6.3.
 2023-05-09 15:24:13 +02:00
Ricardo Wurmus
bd3ef47877
gnu: r-biomartr: Update to 1.0.3. 
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.3.
 2023-05-09 15:24:13 +02:00
Mădălin Ionel Patrașcu
0e09e8ab15
gnu: Add r-multibac. 
* gnu/packages/bioconductor.scm (r-multibac): New variable.
 2023-05-08 10:34:06 +02:00
Ricardo Wurmus
3f8c4899a9
gnu: Add r-ggpicrust2. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): New variable.
 2023-05-02 10:14:37 +02:00
Ricardo Wurmus
9bb428ad68
gnu: Add r-microbiomestat. 
* gnu/packages/bioconductor.scm (r-microbiomestat): New variable.
 2023-05-02 10:14:37 +02:00
Ricardo Wurmus
62ed97c07d
gnu: Add r-lefser. 
* gnu/packages/bioconductor.scm (r-lefser): New variable.
 2023-05-02 10:14:37 +02:00
Ricardo Wurmus
85c137adde
gnu: r-motifstack: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.44.1.
 2023-04-29 23:52:00 +02:00
Ricardo Wurmus
f2ad160acd
gnu: r-chippeakanno: Update to 3.34.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.34.1.
 2023-04-29 23:52:00 +02:00
Ricardo Wurmus
46d78bf045
gnu: r-hpar: Avoid internet access. 
ExperimentHub::createHubAccessors needs internet access.  When R tests if the
package can be loaded it runs zzz.R, which contains the call to
createHubAccessors.  We set the variable GUIX_BUILD to conditionally disable
this call.

* gnu/packages/bioconductor.scm (r-hpar)[arguments]: Add two build phases:
'set-HOME and 'avoid-internet-access.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
6cb123b190
gnu: r-phyloseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.44.0.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
e0c28e52e4
gnu: r-tximeta: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.0.
 2023-04-29 20:28:08 +02:00
Ricardo Wurmus
a605826139
gnu: r-tricycle: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c33697b714
gnu: r-biscuiteer: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.14.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
04978d4592
gnu: r-omnipathr: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
b2a3e274ec
gnu: r-omicade4: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.40.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
15f364a933
gnu: r-dmrseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.20.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3862877bb2
gnu: r-dada2: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
56586f9b9e
gnu: r-bsseq: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.36.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
096133af16
gnu: r-biotmle: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.24.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
0f594abe26
gnu: r-biotip: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.14.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
5a5d466e15
gnu: r-bioqc: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
cb91d8ff79
gnu: r-bionet: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.60.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
e1292069fc
gnu: r-bionero: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
26c76918cb
gnu: r-biomvcclass: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.68.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ce9ee69644
gnu: r-mvcclass: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.74.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3d49b388a5
gnu: r-biomformat: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.28.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c10979dcbe
gnu: r-biodb: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4eb1e7e542
gnu: r-biocdockermanager: Update to 1.11.0. 
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.11.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4684b0d333
gnu: r-biocthis: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
fbd4e9195f
gnu: r-basilisk: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d91cc19ee9
gnu: r-basilisk-utils: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
ad0efa110e
gnu: r-dir-expiry: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.8.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1b80b39aa7
gnu: r-genetclassifier: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.40.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
939155e312
gnu: r-minet: Update to 3.58.0. 
* gnu/packages/bioconductor.scm (r-minet): Update to 3.58.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
d297d24edb
gnu: r-biobtreer: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.12.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
1ff662c8e2
gnu: r-bgeedb: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.26.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
189f9d805e
gnu: r-bgeecall: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
4dd9fdb68f
gnu: r-beclear: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
0d879deae1
gnu: r-megadepth: Update to 1.9.0. 
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.9.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
c09a9bc427
gnu: r-ballgown: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.32.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
e5e7089db5
gnu: r-guitar: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.16.0.
 2023-04-29 20:28:07 +02:00
Ricardo Wurmus
3616dd923f
gnu: r-chromstar: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.26.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
1b3be92024
gnu: r-snpstats: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.50.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
72288df46a
gnu: r-snapcgh: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-snapcgh): Update to 1.70.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
61432d53ff
gnu: r-pathview: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.40.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
ef6059cf27
gnu: r-ldblock: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.30.0.
[propagated-inputs]: Remove r-ensdb-hsapiens-v75, r-ensembldb, r-genomeinfodb,
r-genomicfiles, r-rsamtools, r-snpstats, and r-variantannotation; add
r-rlang.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
c00d4a394d
gnu: r-kegggraph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.60.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
70514e0281
gnu: r-gwascat: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.32.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
e8a52e54f7
gnu: r-gviz: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.44.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
311339801e
gnu: r-ggbio: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.48.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
764220f848
gnu: r-erma: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-erma): Update to 1.16.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
bc7db31ceb
gnu: r-catalyst: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.24.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
d1e16723dd
gnu: r-msmstests: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.38.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
0d854ac754
gnu: r-msmseda: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.38.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
bca0afda01
gnu: r-biocio: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.10.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
6459537f90
gnu: r-msfeatures: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.8.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
f4c4bc5473
gnu: r-mscoreutils: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.12.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
643e63ef61
gnu: r-delayedmatrixstats: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
4b4df8d533
gnu: r-sparsematrixstats: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.12.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
1435a289dd
gnu: r-scran: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
c3056799b3
gnu: r-scater: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.28.0.
[propagated-inputs]: Remove r-gridextra; add r-densvis.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
febe8360c3
gnu: r-scuttle: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
8dc03857a6
gnu: r-singler: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-singler): Update to 2.2.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
b0a6411b85
gnu: r-singlecellexperiment: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
09ada1eb1e
gnu: r-chromvar: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
0609a92c0b
gnu: r-motifmatchr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.22.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
6263d39069
gnu: r-maftools: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.16.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
99c001303d
gnu: r-tfbstools: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.38.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
5ab3d66ffc
gnu: r-cner: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-cner): Update to 1.36.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
b9b6c29a75
gnu: r-beadarraysnp: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-beadarraysnp): Update to 1.66.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
e76467b72c
gnu: r-beachmat: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.16.0.
 2023-04-29 20:28:06 +02:00
Ricardo Wurmus
f482bb1256
gnu: r-rhdf5lib: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.22.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
582dac2949
gnu: r-hdf5array: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
143b70c92b
gnu: r-hitc: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.44.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
765b41564a
gnu: r-fithic: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.26.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
8866d47bce
gnu: r-fishpond: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.0.
[inputs]: Remove zlib.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
85bc989a66
gnu: r-rgraphviz: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.44.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2e81140c18
gnu: r-s4vectors: Update to 0.38.0. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ed6d919ef0
gnu: r-preprocesscore: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.62.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ae8956bbc8
gnu: r-icens: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-icens): Update to 1.72.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
ebd0bdd84c
gnu: r-m3c: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.22.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
aff09ecb05
gnu: r-rgreat: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.2.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
bd1b41e8d1
gnu: r-pcatools: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.12.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
f2ce4a037f
gnu: r-biodist: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.72.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2f1c5f361f
gnu: r-biocworkflowtools: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.26.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
37de521f22
gnu: r-biocset: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.14.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
72ba2d8f48
gnu: r-biocpkgtools: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.18.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
8f9bd84fd9
gnu: r-biocor: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.24.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d63b92465b
gnu: r-bioconcotk: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.20.0.
[propagated-inputs]: Add r-mass.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
94ab8db2d7
gnu: r-multiassayexperiment: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.26.0.
[native-inputs]: Add r-r-rsp.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
621526d5e3
gnu: r-grohmm: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.34.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
29f1477229
gnu: r-experimenthub: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.8.0.
[propagated-inputs]: Remove r-curl.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d0682c7c04
gnu: r-biocviews: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.68.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
0c2009a1b0
gnu: r-biocstyle: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.28.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
d277f69643
gnu: r-biocgraph: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.62.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
b5133a0dc3
gnu: r-bioccheck: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.0.
[propagated-inputs]: Add r-biocfilecache.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
81de52f013
gnu: r-biocbaseutils: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.2.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
39defa2968
gnu: r-ebarrays: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.64.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
f7e7bb2007
gnu: r-reactomepa: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.44.0.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
2474b005cd
gnu: r-graphite: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.46.0.
[native-inputs]: Add r-r-rsp.
 2023-04-29 20:28:05 +02:00
Ricardo Wurmus
b6350013f8
gnu: r-biobroom: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.32.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
9adef62a5b
gnu: r-bioassayr: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.38.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
29944820e1
gnu: r-fmcsr: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.42.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
89fce342bb
gnu: r-chemminer: Update to 3.52.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.52.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
02451fb098
gnu: r-bigpint: Update to 1.15.0. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.15.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
d3f1ba4bf2
gnu: r-biggr: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.36.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c0b7b4ed00
gnu: r-hyperdraw: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.52.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
7f03f14e5f
gnu: r-hypergraph: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.72.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
c6354be8c6
gnu: r-rsbml: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.58.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
7d2852ed0e
gnu: r-bifet: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.20.0.
 2023-04-29 20:28:04 +02:00
Ricardo Wurmus
f273e6f729
gnu: r-bicare: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.58.0.
[propagated-inputs]: Add r-go-db.
 2023-04-29 20:28:04 +02:00