Commit Graph

3544 Commits

Author SHA1 Message Date
Ricardo Wurmus
766479ca25
gnu: r-nmf: Update to 0.26.
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.26.
2023-03-21 12:31:30 +01:00
Ricardo Wurmus
326be9abff
gnu: r-singlecellexperiment: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.20.1.
2023-03-21 09:36:15 +01:00
Ricardo Wurmus
fa048ce50e
gnu: r-variancepartition: Update to 1.28.9.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.9.
2023-03-21 09:36:15 +01:00
Ricardo Wurmus
481abed581
gnu: r-biocparallel: Update to 1.32.6.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.6.
2023-03-21 09:36:15 +01:00
Mădălin Ionel Patrașcu
2336d5f57a
gnu: Add r-annotationhubdata.
* gnu/packages/bioconductor.scm (r-annotationhubdata): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu
40b79eafee
gnu: Add r-affylmgui.
* gnu/packages/bioconductor.scm (r-affylmgui): New variable.
2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu
9f09ac6b21
gnu: Add r-affyplm.
* gnu/packages/bioconductor.scm (r-affyplm): New variable.
2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu
284b5eca60
gnu: Add r-affyilm.
* gnu/packages/bioconductor.scm (r-affyilm): New variable.
2023-03-20 18:25:10 +01:00
Ricardo Wurmus
a28a357675
gnu: r-mutoss: Update to 0.1-13.
* gnu/packages/bioconductor.scm (r-mutoss): Update to 0.1-13.
2023-03-19 16:11:53 +01:00
Ricardo Wurmus
55710837d9
gnu: r-valr: Update to 0.6.7.
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.7.
2023-03-19 16:11:53 +01:00
Ricardo Wurmus
ab428404de
gnu: r-numbat: Update to 1.2.2.
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.2.2.
2023-03-19 16:11:53 +01:00
Ricardo Wurmus
953d808d28
gnu: r-biocthis: Update to 1.8.3.
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.8.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
81697789df
gnu: r-chromvar: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.20.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
d9f29e0342
gnu: r-fishpond: Update to 2.4.1.
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.4.1.
[propagated-inputs]: Remove r-rcpp.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
0d90a01416
gnu: r-s4vectors: Update to 0.36.2.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.36.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
400c046942
gnu: r-biocviews: Update to 1.66.3.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
b21a06353a
gnu: r-bioccheck: Update to 1.34.3.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
2731b5a58c
gnu: r-variancepartition: Update to 1.28.7.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.7.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
5d800ec66b
gnu: r-circrnaprofiler: Update to 1.12.2.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.12.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
78fbd6f666
gnu: r-cicero: Update to 1.16.2.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.16.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
20300ca9c1
gnu: r-rsubread: Update to 2.12.3.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.12.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
9ee316a7e4
gnu: r-iclusterplus: Update to 1.34.3.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.34.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
01911fa0a4
gnu: r-rbowtie2: Update to 2.4.2.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.4.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
ab6909adf0
gnu: r-motifbreakr: Update to 2.12.3.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.12.3.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
e952be7fb2
gnu: r-clusterexperiment: Update to 2.18.2.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.18.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
7f7e39b89b
gnu: r-clusterprofiler: Update to 4.6.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.6.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
0e1edb67ae
gnu: r-sigpathway: Update to 1.66.2.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.66.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
f8c823274d
gnu: r-linnorm: Update to 2.22.2.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.22.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
969e7f1c4f
gnu: r-glmgampoi: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.10.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
590897d28f
gnu: r-diffbind: Update to 3.8.4.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.8.4.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
af9bcbe90f
gnu: r-scmap: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.20.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
8c8930691c
gnu: r-mutationalpatterns: Update to 3.8.1.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.8.1.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
364d9b7c17
gnu: r-muscat: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.12.1.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
586d2bb696
gnu: r-limma: Update to 3.54.2.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.54.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
810a8e5060
gnu: r-lfa: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
20b1ef8047
gnu: r-genomicalignments: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.34.1.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
7f9346c031
gnu: r-annotationdbi: Update to 1.60.2.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.60.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
b9af764895
gnu: r-infercnv: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.2.
2023-03-15 17:40:42 +01:00
Ricardo Wurmus
b28eff5aec
gnu: r-bandits: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.2.
2023-03-15 17:40:41 +01:00
Ricardo Wurmus
eeece329e8
gnu: r-bambu: Update to 3.0.8.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.8.
2023-03-15 17:40:41 +01:00
Ricardo Wurmus
fee92975a2
gnu: r-atena: Update to 1.4.1.
* gnu/packages/bioconductor.scm (r-atena): Update to 1.4.1.
[propagated-inputs]: Add r-matrixstats.
2023-03-15 17:40:41 +01:00
Ricardo Wurmus
9df1de70e1
gnu: r-alpsnmr: Update to 4.0.4.
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.0.4.
[propagated-inputs]: Add r-cli.
2023-03-15 17:40:41 +01:00
Ricardo Wurmus
accebcfce5
gnu: r-biocpkgtools: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.16.1.
[source]: Add snippet to remove bundled minified JavaScript files.
[native-inputs]: Add esbuild, js-bootstrap, js-d3, js-jquery, and
js-underscore.
[arguments]: Add build phase 'process-javascript.
2023-03-15 17:40:41 +01:00
Ricardo Wurmus
db17611dc9
gnu: r-mast: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.24.1.
[source]: Delete minified JavaScript.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild and js-jquery-sticky-kit.
2023-03-15 17:40:38 +01:00
Navid Afkhami
f7682c2475
gnu: Add r-hdcytodata.
* gnu/packages/bioconductor.scm (r-hdcytodata): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-03-10 17:47:24 +01:00
Navid Afkhami
4f681cdbc2
gnu: Add r-oscope.
* gnu/packages/bioconductor.scm (r-oscope): New variable.
2023-03-03 12:04:24 +01:00
Mădălin Ionel Patrașcu
5dae9d2683
gnu: Add r-mmuphin.
* gnu/packages/bioconductor.scm (r-mmuphin): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-03-02 20:11:06 +01:00
Mădălin Ionel Patrașcu
7dc190f83e
gnu: Add r-maaslin2.
* gnu/packages/bioconductor.scm (r-maaslin2): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-03-02 00:08:11 +01:00
Mădălin Ionel Patrașcu
3e4de18d3e
gnu: Add r-metagenomeseq.
* gnu/packages/bioconductor.scm (r-metagenomeseq): New variable.
2023-03-02 00:08:11 +01:00
Mădălin Ionel Patrașcu
1fb43d1d19
gnu: Add r-conos.
* gnu/packages/bioconductor.scm (r-conos): New variable.
2023-03-01 13:46:02 +01:00