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Author SHA1 Message Date
Maxim Cournoyer
b923b31b38
gnu: Add dmd. 
* gnu/packages/dlang.scm (dmd-bootstrap, dmd): New variables.

Change-Id: I53e00a429e2084a392341ef1bc7ea63f0fcaaab4
 2024-01-26 15:38:39 -05:00
Maxim Cournoyer
a99a91ff35
gnu: gdmd: Replace gdc-11 with gdc alias. 
* gnu/packages/dlang.scm (gdmd) [inputs]: Replace gdc-11 with gdc.

Change-Id: Ie035bb79c128c266cee85cf11bf79216f4f8b454
 2024-01-26 15:38:38 -05:00
Maxim Cournoyer
c6bec1ca42
gnu: Add gdc alias. 
* gnu/packages/gcc.scm (gdc): New variable.

Change-Id: I38447e46ffba44d3a9d3757d34fe9ff081803457
Reviewed-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-26 15:38:34 -05:00
Edward Wilson
8ae8b9804f
gnu: emacs-citar: Fix autoloads and restore tests. 
The default build-system emacs doesn't properly expand cl-lib macros when
compiling autoloads. This patch changes the `#:emacs` build argument, fixing a
present bug (reproducible by requiring citar-autoloads in a minimal
environment). This change also allows the validation of compiled autoloads to
succeed, hence the test phase is restored.

* gnu/packages/emacs-xyz.scm (emacs-citar): Change build-system emacs and
restore tests

Change-Id: Id56de922e5220383f8c5015a01e39b4aa2ea8cfb
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-01-26 19:39:31 +03:00
Arun Isaac
4671925528
gnu: ccwl: Update to 0.3.0. 
* gnu/packages/bioinformatics.scm (ccwl): Update to 0.3.0.
[arguments]: Add patch-more-source-shebangs phase.

Change-Id: Ic7926d04c28eeafd799deba5e817574663431db8
 2024-01-26 15:31:56 +00:00
Andreas Enge
cdf1d7dded
gnu: arb: Deprecate package. 
* gnu/packages/algebra.scm (arb): Deprecate in favor of flint, of which
it is now a part.

Change-Id: I02ee2110e77c582b8daf70502f7092eba7c44547
 2024-01-26 10:09:35 +01:00
Andreas Enge
ff9d8420cf
gnu: python-flint: Update to 0.5.0 and build with flint@3. 
* gnu/packages/patches/python-flint-includes.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister file.
* gnu/packages/algebra.scm (python-flint): Update to 0.5.0.
[source]: Drop patch.
[inputs]: Drop arb.
[native-inputs]: Use python-cython-3.

Change-Id: I5fa9b201efff76e16f957aee0ebcd453ea823e69
 2024-01-26 10:09:35 +01:00
Andreas Enge
f027a6c22c
gnu: s7: Compile with flint@3. 
* gnu/packages/patches/s7-flint-3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register file.
* gnu/packages/lisp.scm (s7-bootstrap)[source]: Add patch.
[inputs]: Remove arb.

Change-Id: I06bac9d850977b8ee769e629f1b64411a8dc3247
 2024-01-26 10:09:35 +01:00
Andreas Enge
619417ab23
gnu: pynac: Remove package. 
The package was integrated into the Sagemath source code in 2021.

* gnu/packages/sagemath.scm (pynac): Remove variable.

Change-Id: I5c6a90ed1747852d0dc4e73b79ce9daa34d876c7
 2024-01-26 10:09:35 +01:00
Andreas Enge
25690a7ce1
gnu: flint: Update to 3.0.1. 
* gnu/packages/algebra.scm (flint): Update to 3.0.1.
  [arguments]: Remove obsolete phase additions.

Change-Id: Iebac9d3a0b1e19147df9402d522c55cb168148d7
 2024-01-26 10:09:34 +01:00
Clément Lassieur
fdffaa2256
gnu: torbrowser: Update to 13.0.9. 
* gnu/packages/gnuzilla.scm: Stop exporting ‘all-mozilla-locales’.
* gnu/packages/tor.scm (mozilla-locale): New procedure copied from
gnuzilla.scm.
(mozilla-locales): New macro adapted from gnuzilla.scm.
(%torbrowser-locales): Add sha256 and changeset for each locale and update
them all.
(%moz-build-date): Update to 20240123154553.
(%torbrowser-version): Update to 13.0.9.
(%torbrowser-firefox-version): Update to 115.7.0esr-13.0-1-build1.
(translation-base-browser): Update to cbd9b6c.
(translation-tor-browser): Update to 767ab51.
(torbrowser)[arguments]: Adapt to new ‘%torbrowser-locales’ format.

Change-Id: I774db714f3df53adc5be37109126bde5fab1a9a6
 2024-01-26 01:17:16 +01:00
Sharlatan Hellseher
9b657bab84
gnu: Sort inputs in (gnu packages books) alphabetically. 
* gnu/packages/books.scm: Sort #:use-modules and inputs alphabetically
to ease maintenance.

Change-Id: Ifdd94277a51fb34e740398bd962b03098a775572
 2024-01-25 21:34:37 +00:00
Artyom V. Poptsov
d1951037b4
gnu: book-sparc: Update to 2.0.0. 
* gnu/packages/books.scm (book-sparc): Update to 2.0.0.
  [inputs]: Add texlive-chngcntr.

Change-Id: Ief8c8c697e30fbe6f483fdc49969714ca64480fe
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-25 21:34:27 +00:00
Ricardo Wurmus
d6c394d6a1
gnu: python-pyscss: Update to 1.4.0. 
* gnu/packages/python-web.scm (python-pyscss): Update to 1.4.0.
[source]: Remove snippet.
[arguments]: Remove; enable tests.

Change-Id: I954baf228e6e343b616b6a0eb15742920873f31d
 2024-01-25 20:49:35 +01:00
Ricardo Wurmus
05fbafb6a4
gnu: Add python-huggingface-hub. 
* gnu/packages/python-web.scm (python-huggingface-hub): New variable.

Change-Id: I87f668a1ad170fa229902aae5be94e8d4751f38d
 2024-01-25 20:49:35 +01:00
Hilton Chain
ed7eb108e5
gnu: libcgroup: Update to 3.1.0. 
* gnu/packages/linux.scm (libcgroup): Update to 3.1.0.
[arguments]<#:configure-flags>: Disable systemd.

Change-Id: Iabd8577243b741380fa0d69811fcbf8ad551ddb2
 2024-01-25 23:49:37 +08:00
Hilton Chain
0252d69f91
gnu: libcgroup: Adjust package style. 
* gnu/packages/linux.scm (libcgroup)[source]<uri>: Remove use of ‘home-page’.

Change-Id: I93f22223a01b253b8b1cd7deea90e7f05736862f
 2024-01-25 23:49:31 +08:00
Denis 'GNUtoo' Carikli
06221e910a
gnu: Add aflplusplus. 
* gnu/packages/debug.scm (aflplusplus): New variable.

Change-Id: Ibda36187e839d5f533d461444db25a7ba5567f0f
Modified-by: Hilton Chain <hako@ultrarare.space>
Signed-off-by: Hilton Chain <hako@ultrarare.space>
 2024-01-25 23:48:49 +08:00
Ricardo Wurmus
250477d896
gnu: Add python-gh-md-to-html. 
* gnu/packages/python-xyz.scm (python-gh-md-to-html): New variable.

Change-Id: I8a7f62000eec0636d2c1114c53c852fa136576b1
 2024-01-25 15:13:52 +01:00
Ricardo Wurmus
72a758bcd3
gnu: python-pyro-ppl: Skip one more test. 
* gnu/packages/machine-learning.scm (python-pyro-ppl)[build-system]: Use
pyproject-build-system.
[arguments]: Remove custom 'check phase and replace with #:test-flags; disable
test_sample tests.

Change-Id: I058892451b9e5c96b077fae426a6649ce16f54c5
 2024-01-25 15:13:51 +01:00
Ricardo Wurmus
6623a8151a
gnu: Add music. 
* gnu/packages/bioinformatics.scm (music): New variable.

Change-Id: Iba5c986a0d3143118d4640d3ee9d4dae8119163f
 2024-01-25 15:13:51 +01:00
Andreas Enge
5111915e6a
gnu: s7: Update to 24.1-0.23a64fa. 
* gnu/packages/lisp.scm (s7-bootstrap): Update to 24.1-0.23a64fa.

Change-Id: I5853c2f4bb7f2f8c9c34fd8f3d358d94d287d14b
 2024-01-25 12:01:58 +01:00
Efraim Flashner
eb3d1d65eb
gnu: qtwebengine: Build with clang-15. 
* gnu/packages/qt.scm (qtwebengine)[native-inputs]: Replace clang-14
with clang-15, lld-as-ld-wrapper with lld-as-ld-wrapper-15.

Change-Id: Iefecc519d5bf1edc968225454339656af4592170
 2024-01-25 12:18:26 +02:00
Efraim Flashner
f396873dde
gnu: ldc: Build with llvm-15. 
* gnu/packages/dlang.scm (ldc-bootstrap)[native-inputs]: Replace llvm-14
with llvm-15, lld-wrapper-14 with lld-wrapper-15.
(ldc)[native-inputs]: Replace clang-14 with clang-15.

Change-Id: Iaa2023c7fb8a515c50a141d0157d9023cfb5c623
 2024-01-25 12:18:26 +02:00
Ricardo Wurmus
891f97d260
gnu: r-bayesfactor: Update to 0.9.12-4.7. 
* gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.7.

Change-Id: I946e370397d5ca7d58f9b61fd2aaebe988ece43c
 2024-01-25 09:43:05 +01:00
Ricardo Wurmus
ed64ab4c9a
gnu: r-cowplot: Update to 1.1.3. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.3.

Change-Id: I06bc9f67a9911ef927d31f7d33b4e59c2f25e02b
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
d63c2ee69e
gnu: r-r-oo: Update to 1.26.0. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.26.0.

Change-Id: Ic85ada2a8f72202641cfc75f73344c23bc7d152a
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
a73bf3375b
gnu: r-segmented: Update to 2.0-2. 
* gnu/packages/statistics.scm (r-segmented): Update to 2.0-2.

Change-Id: I4753d69bf5c38fec7d37acb3b214652de4be3d0c
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
b029555e56
gnu: r-ggh4x: Update to 0.2.8. 
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.8.

Change-Id: I9757f1168761b5f9d820ba43bfffcea7d4979e66
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
44d50d1b08
gnu: r-consrank: Update to 2.1.4. 
* gnu/packages/cran.scm (r-consrank): Update to 2.1.4.

Change-Id: Icf447178150fe8bd2d8c9cce344ef7cebc080c14
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
cd635c19a7
gnu: r-directlabels: Update to 2024.1.21. 
* gnu/packages/cran.scm (r-directlabels): Update to 2024.1.21.

Change-Id: I4efad0c947bf02083459653e800b68e8a26acbbf
 2024-01-25 09:43:04 +01:00
Ricardo Wurmus
85ac63bd71
gnu: r-rainbow: Update to 3.8. 
* gnu/packages/cran.scm (r-rainbow): Update to 3.8.

Change-Id: Ice3e294dd35979a1e7b0bb0cdfbd116d6023f0e2
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
cf3a5f51bd
gnu: r-r-filesets: Update to 2.15.1. 
* gnu/packages/cran.scm (r-r-filesets): Update to 2.15.1.

Change-Id: I65b0ead73e5c0b48eb4717d7a35796a5f6ca0c5f
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
353de1f8de
gnu: r-r-huge: Update to 0.10.1. 
* gnu/packages/cran.scm (r-r-huge): Update to 0.10.1.

Change-Id: Ia7a7cceefd816a36fd8c33866e379c5780088c42
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
bd65f7b6af
gnu: r-kableextra: Update to 1.4.0. 
* gnu/packages/cran.scm (r-kableextra): Update to 1.4.0.
[propagated-inputs]: Remove r-glue, r-rvest, and r-webshot.

Change-Id: I54ae752da0b802b0f322c8762d73c3d1519103ee
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
aea3c44027
gnu: r-rcppannoy: Update to 0.0.22. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.22.

Change-Id: I87fde0568881276bec612ae99e95ea5c9c70a3f0
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
b634edeaab
gnu: r-emmeans: Update to 1.10.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.10.0.

Change-Id: I32a041b81e528b8b07068f748a7b9f8186a34a89
 2024-01-25 09:43:03 +01:00
Ricardo Wurmus
c12bc9a581
gnu: r-ggridges: Update to 0.5.6. 
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.6.

Change-Id: Ic0c746f31294f8a4e9668eff6ae7d02c27f64f1c
 2024-01-25 09:43:02 +01:00
Ricardo Wurmus
6064758fdf
gnu: r-conos: Update to 1.5.1. 
* gnu/packages/bioconductor.scm (r-conos): Update to 1.5.1.

Change-Id: If05dea04f6abb3c78504ab46aa052aeb288a7c8c
 2024-01-25 09:43:02 +01:00
Ricardo Wurmus
ee805f86fe
gnu: r-tidyr: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.3.1.

Change-Id: I4b97cbcaad562070440d692a1a5652eb15123516
 2024-01-25 09:43:02 +01:00
Vinicius Monego
ffa73f8ef2
gnu: python-opentsne: Update to 1.0.1. 
* gnu/packages/machine-learning.scm (python-opentsne): Update to 1.0.1.

Change-Id: Ic71c3622e9408a21c5bade00228a9af5320c6dce
 2024-01-24 20:02:55 -03:00
Vinicius Monego
b6e3527aae
gnu: python-pymc: Update to 5.10.3. 
* gnu/packages/statistics.scm (python-pymc): Update to 5.10.3.

Change-Id: I7c30e5a487f97415ef3bf7f9c514a5de54dcd611
 2024-01-24 20:02:51 -03:00
Vinicius Monego
90b80796bf
gnu: python-arviz: Update to 0.17.0. 
* gnu/packages/statistics.scm (python-arviz): Update to 0.17.0.

Change-Id: I93112c570010165c888b5e303a3c82d80cda3016
 2024-01-24 20:02:51 -03:00
Vinicius Monego
a4c9766108
gnu: python-xarray-einstats: Update to 0.7.0. 
* gnu/packages/python-science.scm (python-xarray-einstats): Update to 0.7.0.

Change-Id: Iddd1fca8c37f05a928d20b90f9f95814f31435b2
 2024-01-24 20:02:51 -03:00
Vinicius Monego
2836325c2b
gnu: python-scikit-rf: Update to 0.31.0. 
* gnu/packages/engineering.scm (python-scikit-rf): Update to 0.31.0.

Change-Id: I5dc8891530d7a7e55a899cfde4f72aecc83ec044
 2024-01-24 20:02:47 -03:00
Roman Scherer
8bee6bb9aa
gnu: guile-fibers: Disable failing tests on aarch64. 
* gnu/packages/guile-xyz.scm (guile-fibers)[arguments]: In
‘disable-some-tests’ phase, disable failing tests on aarch64.

Change-Id: Id05b516a659f641cc7ef01efdaf6cd1f2c735800
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2024-01-24 23:28:38 +01:00
Ludovic Courtès
96c2186a08
services: cuirass: Depend on ‘user-processes’. 
* gnu/services/cuirass.scm (cuirass-shepherd-service)
(cuirass-remote-worker-shepherd-service): Add ‘user-processes’ to the
‘requirement’ field.

Change-Id: Iba087bfd8aaa9b1ef54bcc77d855adc136e18644
 2024-01-24 23:28:38 +01:00
Ludovic Courtès
94abfccde9
services: cuirass: Add ‘configuration’ action. 
* gnu/services/cuirass.scm (cuirass-shepherd-service): Add ‘actions’
field to ‘cuirass’ Shepherd service.

Change-Id: I7feaeebcb89fcd9a1fdbc63f0337e0d63b697793
 2024-01-24 23:28:37 +01:00
Sharlatan Hellseher
8f86cbd5e9
gnu: libnova: Use G-Expressions. 
* gnu/packages/astronomy.scm (libnova): Adjust package style by applying
G-Expressions and fix indention.
[arguments]<#:phases>: Remove trailing #f from lambda.

Change-Id: I63d239464fd3cb166449ef8904b5fd72326cb853
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
f74a8e8ac0
gnu: stackistry: Use G-Expressions. 
* gnu/packages/astronomy.scm (stackistry): Update package style by using
G-Expressions. Apply indention.
[arguments]<#:tests?>: Use it instead of deleting check phase.
<#:phases>: Remove trailing #f from each lambda.

Change-Id: I30f3906719713f0d47dc2049564bc2691ba3cd5d
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
6431cf121d
gnu: libpasastro: Use G-Expressions. 
* gnu/packages/astronomy.scm (libpasastro):
[supported-systems]: Add it.
[arguments]: Rewrite using G-expressions.
[description]: Remove trailing \n.

Change-Id: Ic0e79394be1110566f5481963fdd167985c1a770
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
e586c8189b
gnu: python-stsynphot: Fix build. 
* gnu/packages/astronomy.scm (python-stsynphot): Fix build.
[native-inputs]: Add python-semantic-version.

Change-Id: I72b086c6a0461293c2191e39e25b3c803279bf60
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
884bddc26c
gnu: python-skyfield: Update to 1.47. 
* gnu/packages/astronomy.scm (python-skyfield): Update to 1.47.
[inputs]: Remove python-certifi, python-jplephem, python-numpy, and python-sgp4.
[propagated-inputs]: Add python-certifi, python-jplephem, python-numpy, and python-sgp4.

Change-Id: If5a9a47077edcebe83449c4c54a49189dea61c5a
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
324bc1ea8f
gnu: python-tweakwcs: Update to 0.8.6. 
* gnu/packages/astronomy.scm (python-tweakwcs): Update to 0.8.6.

Change-Id: Icfbb7680a5e208d68f5b8da3fa3fdd35a358ecf5
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
a57fa5a8ce
gnu: python-synphot: Enable more options. 
* gnu/packages/astronomy.scm (python-synphot) [propagated-inputs]: Add
python-dust-extinction and python-specutils. Sort alphabetically.
[native-inputs]: Add python-semantic-version.

Change-Id: If4dbcf2765508d7c7e2b7580193367ed2d038b6f
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
fb4293c4ec
gnu: Add python-specutils. 
* gnu/packages/astronomy.scm (python-specutils): New variable.

Change-Id: Ic2ee65eb8a6fb7e5fe0d0d086541d47eef8bd1ad
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
4d00cf5d78
gnu: Add python-dust-extinction. 
* gnu/packages/astronomy.scm (python-dust-extinction): New variable.

Change-Id: I6fecfede0c347d032555b8f81bcf4f7072fc1129
 2024-01-24 22:24:38 +00:00
Sharlatan Hellseher
a75c4114f8
gnu: Add python-ndcube. 
* gnu/packages/astronomy.scm (python-ndcube): New variable.

Change-Id: I94087c7e02ca678531bcbf4eb3d035e2647768fd
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
5d390495ab
gnu: python-sunpy: Update to 5.1.1. 
* gnu/packages/astronomy.scm (python-sunpy): Update to 5.1.1.
[arguments]<#:test-flags>: Ignore test_spice.py as SpicePy is not packed
yet and python-spicepy is optional.
<#:phases>{prepare-test-environment}: Add pytest.ini configuration file
to fix tests.

Change-Id: Icfb05ce29b376a05291e9f7020170e389d0081d2
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
8084df8b10
gnu: python-stcal: Update to 1.5.2. 
* gnu/packages/astronomy.scm (python-stcal): Update to 1.5.2.
[propagated-inputs]: Add python-asdf-3.0 and python-gwcs.
[native-inputs]: Remove python-cython; add python-cython-3 and python-semantic-version.

Change-Id: I8b6a90a3c0b75ee43de4c7069950a4f9578ea825
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
4a68e6aabf
gnu: python-pyvo: Update to 1.5. 
* gnu/packages/astronomy.scm (python-pyvo): Update to 1.5.
[propagated-inputs]: Remove python-mimeparse.

Change-Id: I4d3e19b95c034cf3c82cec55a198d9a927934971
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
01b0ed5a6d
gnu: python-drms: Update to 0.7.1. 
* gnu/packages/astronomy.scm (python-drms): Update to 0.7.1.

Change-Id: I3744efa8c87db7fcb743bf8dca4ec6a437a82951
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
e5923f4f3c
gnu: python-crds: Update to 11.17.14. 
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.14.
[description]: Indent it and apply TexInfo style on URLs.

Change-Id: Icd298578cf685cfbc454d5b16b9f89c6d050b93a
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
25b69fcac8
gnu: libxisf: Update to 0.2.11. 
* gnu/packages/astronomy.scm (libxisf): Update to 0.2.11.

Change-Id: I79242d42af3db660c46be0baf05e11ea7ac680f7
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
eb4cee3a9c
gnu: gpredict: Update home-page and description. 
* gnu/packages/astronomy.scm (gpredict)[home-page]: Update it according
to project's README.
[description]: Add feature detailed list.

Change-Id: If5edc6e50796c7753ac47fac082c267145723361
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
b4f638879d
gnu: indi-2.0: Update to 2.0.5. 
* gnu/packages/astronomy.scm (indi-2.0): Update to 2.0.5.

Change-Id: I9cea7e7d11af5a142066f11a2185eb826570afb5
 2024-01-24 22:24:37 +00:00
Sharlatan Hellseher
800b09aeef
gnu: stellarium: Update to 23.4. 
* gnu/packages/astronomy.scm (stellarium): Update to 23.4.
[inputs]: Add nlopt.

Change-Id: Id205ad84ff75a687f6c1fdababcf3040c0c55abd
 2024-01-24 22:24:37 +00:00
Ricardo Wurmus
2266754382
gnu: python-pytorch-geometric: Disable one test. 
* gnu/packages/machine-learning.scm (python-pytorch-geometric)[arguments]:
Disable test_gdc as it occasionally fails.

Change-Id: I9d1dc1b68628801ea1bb5a8bdfa17063990748ea
 2024-01-24 22:37:14 +01:00
Efraim Flashner
362ab8bf18
gnu: libdispatch: Update to 5.9.2. 
* gnu/packages/c.scm (libdispatch): Update to 5.9.2.

Change-Id: I119d1de974673aa2c08eb51a7bcaa7ce24aeb0b2
 2024-01-24 22:25:00 +02:00
Efraim Flashner
da3e6aea0a
gnu: range-v3: Update to 0.12.0. 
* gnu/packages/cpp.scm (range-v3): Update to 0.12.0.
[source]: Remove patch.
* gnu/packages/patches/range-v3-build-with-gcc10.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Change-Id: I078937f9aff0da31ede8d472d8739e48bb775c55
 2024-01-24 19:15:30 +02:00
Efraim Flashner
c0f3c0cfd9
gnu: range-v3: Format with 'guix style'. 
* gnu/packages/cpp.scm (range-v3): Format with 'guix style'.

Change-Id: I249443e5e5d0f7ef49e33de4f140246a862101d2
 2024-01-24 19:15:30 +02:00
Efraim Flashner
3643389ba7
gnu: range-v3: Build with newer gcc. 
* gnu/packages/cpp.scm (range-v3)[native-inputs]: Remove gcc-9.

Change-Id: I0411d5db3e3df15c6df0a9a010d311fe1c80015c
 2024-01-24 19:15:25 +02:00
Ricardo Wurmus
c3353791a4
gnu: python-xgboost: Fix build. 
* gnu/packages/machine-learning.scm (python-xgboost)[build-system]: Use
pyproject-build-system.
[arguments]: Move test flags to #:test-flags; disable a few more tests, mostly
to account for a removed dataset; use G-expression; remove custom 'check phase.

Change-Id: I6841a8c159919df85acaa8558248a8775ec5be80
 2024-01-24 17:37:37 +01:00
Andre A. Gomes
2c5faa9ab8
gnu: webkitgtk: Update to 2.42.4 [fixes CVE-2023-42883]. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.42.4.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2024-01-24 10:47:05 -05:00
Maxim Cournoyer
e479920cfd
gnu: emacs-yasnippet: Update to 0.14.0-0.297546f. 
* gnu/packages/emacs-xyz.scm (emacs-yasnippet): Update to 0.14.0-0.297546f.
Remove fix-tests patch.
* gnu/packages/patches/emacs-yasnippet-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.

Change-Id: I3fda2bb3d879d88f06f9d814b6c8d835d9eafc9f
 2024-01-24 10:42:42 -05:00
Ricardo Wurmus
c797abdd29
gnu: Add python-pytorch-geometric. 
* gnu/packages/machine-learning.scm (python-pytorch-geometric): New variable.

Change-Id: I9a016cda7d167159437724a878e6512c37106fea
 2024-01-24 16:36:37 +01:00
Andreas Enge
e54124ca4d
gnu: singular: Update to 4.3.2p10. 
* gnu/packages/algebra.scm (singular): Update to 4.3.2p10.

Change-Id: I196d31e3f5605dd51385146ce091d63a4e9eb340
 2024-01-24 14:31:16 +01:00
Ricardo Wurmus
db96cc0ba2
gnu: Add r-papaja. 
* gnu/packages/cran.scm (r-papaja): New variable.

Co-authored-by: Lars-Dominik Braun <lars@6xq.net>
Change-Id: Ib5b3a6ff8d52052cf135b2ba36cad3ce295ed6d4
 2024-01-24 13:02:01 +01:00
Ricardo Wurmus
d5e7ad7188
gnu: Add r-tinylabels. 
* gnu/packages/cran.scm (r-tinylabels): New variable.

Change-Id: Ie86de4daaf132cd32f896573be747f35e725258e
 2024-01-24 13:01:52 +01:00
Ricardo Wurmus
90b9cb1298
gnu: Add r-rmdfiltr. 
* gnu/packages/cran.scm (r-rmdfiltr): New variable.

Change-Id: I59b92e9364ca4e74a98b80b6cca1a883ab3caec3
 2024-01-24 13:01:41 +01:00
Ricardo Wurmus
420692482f
gnu: python-chaospy: Ignore deprecation warnings. 
* gnu/packages/statistics.scm (python-chaospy)[arguments]: Add phase
'dont-treat-deprecation-warnings-as-error.

Change-Id: Id06404f9e47f7084fefc2e72032882d49e5b546b
 2024-01-24 12:49:29 +01:00
Andreas Enge
43a82ad545
gnu: pynac: Update to 0.7.29. 
* gnu/packages/sagemath.scm (pynac): Update to 0.7.29.

Change-Id: I3bf2675aea9d8a07fdcfa08471c9d1ca7725e1f7
 2024-01-24 12:31:21 +01:00
Ricardo Wurmus
afd0fe50b0
gnu: python-pyts: Update to 0.13.0. 
* gnu/packages/python-science.scm (python-pyts): Update to 0.13.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; enable all tests.
[propagated-inputs]: Remove python-matplotlib.

Change-Id: Iafcc047d8bb14e1eef514fd92aa53f8fda38eab0
 2024-01-24 11:34:35 +01:00
Ricardo Wurmus
6a22f65d66
gnu: python-scikit-learn-extra: Update to 0.3.0-1.0f95d8d. 
* gnu/packages/machine-learning.scm (python-scikit-learn-extra): Update to
0.3.0-1.0f95d8d.
[arguments]: Move test flags out of 'check phase and to #:test-flags.
[propagated-inputs]: Add python-packaging.

Change-Id: I4081a9364a0646d0c6960a3d155315e8eff8af59
 2024-01-24 11:34:35 +01:00
Andre A. Gomes
90f9528748
gnu: nyxt: Update to 3.11.1. 
* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.1.
  [inputs]: Remove sbcl-fset and sbcl-mk-string-metrics. Add gst-libav,
  gst-plugins-bad, gst-plugins-base, gst-plugins-good, gst-plugins-ugly.
  [arguments]: Update 'configure-tests' phase.
  [home-page]: Update URL.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: If35d6f0153339b311057bea05562fefb215c3f0d
 2024-01-24 11:18:02 +01:00
Andre A. Gomes
8aa3ae15dd
gnu: cl-lass: Update to 0.6.0-1.1f2418d. 
* gnu/packages/lisp-xyz.scm (sbcl-lass): Update to 0.6.0-1.1f2418d.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Change-Id: I51dfe84b9194b4d94d76502ffd47f88cbc1583fb
 2024-01-24 11:18:02 +01:00
Sharlatan Hellseher
3419c216b4
gnu: python-pydicom: Update to 2.4.4. 
* gnu/packages/python-science.scm (python-pydicom): Update to 2.4.4.

Change-Id: I996115fb3bdf0bd61d2b2dcdb2500b31ce104597
 2024-01-23 23:57:32 +00:00
Sharlatan Hellseher
b537437af7
gnu: python-pydicom: Simplify package style. 
* gnu/packages/python-science.scm (python-pydicom)[build-system]: Swap
to pyproject-build-system.
[description]: Simplify wording, indent.

Change-Id: I7ef413ea2da6cbb83eb33424c559f7ac5ed549cb
 2024-01-23 23:54:44 +00:00
Sharlatan Hellseher
5a616cc14b
gnu: python-pynetdicom: Simplify package style. 
* gnu/package/python-science.scm (python-pynetdicom)[build-system]: Swap
to pyproject-build-system.
[description]: Simplify wording, indent.

Change-Id: If4e80d06edb0080685d0695f30abc2f9db669f45
 2024-01-23 23:51:48 +00:00
Antero Mejr
e71abbc643
gnu: Add python-pynetdicom. 
* gnu/packages/python-science.scm (python-pynetdicom): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-23 23:38:02 +00:00
Ricardo Wurmus
c376298c7c
gnu: Add flash. 
* gnu/packages/bioinformatics.scm (flash): New variable.

Change-Id: Id657ba7850031ad24b4333b6bc79401511e00a85
 2024-01-23 23:47:31 +01:00
Ricardo Wurmus
825b3ca763
gnu: Add isolator. 
* gnu/packages/bioinformatics.scm (isolator): New variable.

Change-Id: I950baca5b6898576f358b3364b1fe541b3333298
 2024-01-23 23:43:19 +01:00
Mathieu Othacehe
3aa60e4096
ci: Don't cross compile to or1k-elf. 
* gnu/ci.scm (cross-jobs)[pointless?]: Don't build any packages for or1k-elf.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Change-Id: I294429d5318b94fb8e7780a37f3608b5321cf6ca
 2024-01-23 21:45:36 +01:00
Ricardo Wurmus
b9a5c50d8c
gnu: Add metal. 
* gnu/packages/bioinformatics.scm (metal): New variable.

Change-Id: I70fd30c18303f61a9f6720e70d4b4e57140a7140
 2024-01-23 21:41:58 +01:00
Ricardo Wurmus
25f0964c3e
gnu: Add randfold. 
* gnu/packages/bioinformatics.scm (randfold): New variable.

Change-Id: If2cea9c8d5323296015dc21ea7a3d1b677ae2798
 2024-01-23 21:31:51 +01:00
Ricardo Wurmus
ebad9d6c0e
gnu: Add python-pyfasta. 
* gnu/packages/bioinformatics.scm (python-pyfasta): New variable.

Change-Id: Ib2ab0a6eb250309633d5be33c18409227bce84ba
 2024-01-23 21:26:50 +01:00
Ricardo Wurmus
f7373261e9
gnu: Add python-fcsparser. 
* gnu/packages/bioinformatics.scm (python-fcsparser): New variable.

Change-Id: I87ed7f10bbfdf7d689cb6289a5f5ad31872f9de0
 2024-01-23 21:22:45 +01:00
Ricardo Wurmus
469405375c
gnu: Add lsgkm. 
* gnu/packages/bioinformatics.scm (lsgkm): New variable.

Change-Id: I0ea35354c7856e7425567cd4ac27ab7fc2ab0d9e
 2024-01-23 21:18:07 +01:00
Mark H Weaver
648085dab6
gnu: icecat: Update to 115.7.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2024-0741, CVE-2024-0742, CVE-2024-0746,
CVE-2024-0747, CVE-2024-0749, CVE-2024-0750, CVE-2024-0751,
CVE-2024-0753, and CVE-2024-0755.

* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2024-01-23 11:09:02 -05:00
Efraim Flashner
40fb160a5e
Revert "gnu: source-highlight: Wrap scripts." 
This package causes the rebuild of more than 9000 packages.

This reverts commit 367bc2d198.
 2024-01-23 17:33:54 +02:00
Artyom V. Poptsov
e3f4ab49b1
gnu: kubo: Update to 0.18.0. 
* gnu/packages/ipfs.scm (kubo): Update to 0.18.0.
  [inputs]: Add go-github-com-gorilla-mux.

Change-Id: I4eccdfcf9eadbdf25728fcca766c5238efb0d57f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-23 14:07:01 +00:00
Efraim Flashner
367bc2d198
gnu: source-highlight: Wrap scripts. 
* gnu/packages/pretty-print.scm (source-highlight)[arguments]: Add a
phase to wrap shell scripts so they can find the source-hightlight
binary.
[inputs]: Add guile-3.0.

Change-Id: Ia8d006d969385210d5c82b4a0dd1f78178306ac2
 2024-01-23 16:04:42 +02:00
Sharlatan Hellseher
fbeae77ae6
gnu: trurl: Update to 0.9. 
* gnu/packages/curl.scm (trurl): Update to 0.9.

Change-Id: Ieb0f19e6d48897dceb32e317613a301f521c9b94
 2024-01-23 14:01:51 +00:00
Ricardo Wurmus
d3129b3f1e
gnu: Add eddylab-squid. 
* gnu/packages/bioinformatics.scm (eddylab-squid): New variable.

Change-Id: Icb02f42fc95d2001a639e22608a01ef9074158bc
 2024-01-23 13:52:36 +01:00
Ricardo Wurmus
6a82745746
gnu: Add python-magic-impute. 
* gnu/packages/bioinformatics.scm (python-magic-impute): New variable.

Change-Id: Iba5240e9920a1045078c736553cb1d56069963b5
 2024-01-23 13:42:55 +01:00
Ricardo Wurmus
1bdc4eeb46
gnu: Add python-graphtools. 
* gnu/packages/graph.scm (python-graphtools): New variable.

Change-Id: If08b1460447702f7ec2e64f013a52a7065076b01
 2024-01-23 13:42:55 +01:00
Ricardo Wurmus
a313875476
gnu: Add python-tasklogger. 
* gnu/packages/python-xyz.scm (python-tasklogger): New variable.

Change-Id: I53319b70b7788090e8873a912d7c56044c0bb5b2
 2024-01-23 13:36:48 +01:00
Ricardo Wurmus
561d429aa4
gnu: python-nose2: Update to 0.14.0. 
* gnu/packages/check.scm (python-nose2): Update to 0.14.0.
[native-inputs]: Remove python-coverage.
[propagated-inputs]: Remove python-six.

Change-Id: I15a30723fe49cca9929524e543d12c9e2f4b02ca
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
a6b6d1bd6a
gnu: python-scikit-learn: Disable one test. 
This test fails with the upgrade of scipy.

* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Disable
test_singular_matrix test.

Change-Id: I47627403826bb5c52f4d578399c7cabaa3f8838d
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
123c880fe9
gnu: Add python-pygsp. 
* gnu/packages/graph.scm (python-pygsp): New variable.

Change-Id: I8dd195216617e5cdb4a7453ecbe23cd9ff9e06a3
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
6e835cd380
gnu: Add r-scenic. 
* gnu/packages/bioinformatics.scm (r-scenic): New variable.

Change-Id: Iff1f501a406ba1a12e49093a575e03facc98f303
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
994817bfdc
gnu: python-scipy: Update to 1.12.0. 
* gnu/packages/python-science.scm (python-scipy): Update to 1.12.0.
[propagated-inputs]: Add python-jupytext, python-mpmath, python-mypy,
python-numpydoc, python-pydata-sphinx-theme, python-pydevtool,
python-rich-click, python-sphinx, python-threadpoolctl, and
python-typing-extensions; remove python-pyparsing.
[native-inputs]: Add python-hypothesis, python-pycodestyle, python-pytest-cov,
and python-pytest-xdist; remove python-threadpoolctl.

Change-Id: I81a4831e3d94c58416f7d35ec47de90370b88210
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
2eb061be79
gnu: r-desctools: Update to 0.99.53. 
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.53.

Change-Id: I425b37907b51a93fafa193d217bdf68636f608a7
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
24d6410125
gnu: r-plotly: Update to 4.10.4. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.10.4.

Change-Id: Idd10685b1ab521056e0468f0c0c188543c11c96a
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
863ba4b830
gnu: r-xml: Update to 3.99-0.16.1. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.16.1.

Change-Id: I2936eac03ec20b091e45b920f946d92028099973
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
b4a255c2fb
gnu: r-rsqlite: Update to 2.3.5. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.5.

Change-Id: I43e95bc4ff0b0dc36cf9f3de1705d63bc5681286
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
bf933e4f11
gnu: r-roxygen2: Update to 7.3.1. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.3.1.

Change-Id: I5d23ee576beb4dc4dc1e49d13cc38ffef0d33512
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
4fa0d97e99
gnu: r-maldiquant: Update to 1.22.2. 
* gnu/packages/cran.scm (r-maldiquant): Update to 1.22.2.

Change-Id: Ia483cff36bb3a2cbf4b691bb4832ce98757aabe0
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
0a733805d8
gnu: r-modeldata: Update to 1.3.0. 
* gnu/packages/cran.scm (r-modeldata): Update to 1.3.0.

Change-Id: Ibaef5366948e9ca45325d279a99f14417ca43e8e
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
9eb92d55e0
gnu: r-yardstick: Update to 1.3.0. 
* gnu/packages/cran.scm (r-yardstick): Update to 1.3.0.
[propagated-inputs]: Add r-withr.

Change-Id: I00a5d74cca4396e685df32f85d998004a3e94edc
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
a9de282219
gnu: r-lightgbm: Update to 4.3.0. 
* gnu/packages/cran.scm (r-lightgbm): Update to 4.3.0.

Change-Id: I9da6fbcf9558f1ed47b41abd7183f3c53ba1ec67
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
ad552bf927
gnu: r-rstanarm: Update to 2.32.1. 
* gnu/packages/cran.scm (r-rstanarm): Update to 2.32.1.

Change-Id: Ib83276a66add397aeacd830803f94f713f0c22e3
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
fe495a9c64
gnu: r-matrixextra: Update to 0.1.15. 
* gnu/packages/cran.scm (r-matrixextra): Update to 0.1.15.

Change-Id: I72c274e3075cc40d0f6aafb8199a4594c1a518c6
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
3995f40cd7
gnu: r-graphlayouts: Update to 1.1.0. 
* gnu/packages/cran.scm (r-graphlayouts): Update to 1.1.0.

Change-Id: I5056c2158af15aeed9d5b53a52149e67d6d50b56
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
306fa840ed
gnu: r-mcmcpack: Update to 1.7-0. 
* gnu/packages/cran.scm (r-mcmcpack): Update to 1.7-0.

Change-Id: I2e480dee05c23158b9ab58de5f9a90e623a7f6b2
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
899ee468d3
gnu: r-ggfun: Update to 0.1.4. 
* gnu/packages/cran.scm (r-ggfun): Update to 0.1.4.

Change-Id: I08cf695cd03bf28aaa2f2b7b4a35c6632a7027c4
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
495372ea1f
gnu: r-rmpfr: Update to 0.9-5. 
* gnu/packages/cran.scm (r-rmpfr): Update to 0.9-5.

Change-Id: I32ba06d98406989aca7129f9f647e836e06663f8
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
da3bd82788
gnu: r-bigrquery: Update to 1.5.0. 
* gnu/packages/cran.scm (r-bigrquery): Update to 1.5.0.
[propagated-inputs]: Remove r-assertthat, r-glue, r-progress, r-rcpp, and r-withr; add
r-clock and r-cpp11.

Change-Id: I3f1eb2e32ce901231303a2eb905e8fd7aa0f995a
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
ef3b092587
gnu: r-fmsb: Update to 0.7.6. 
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.6.

Change-Id: I9acec8e49ba036f263223a37c53cf9d4a82ba59f
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
617c41f418
gnu: r-quickjsr: Update to 1.1.0. 
* gnu/packages/cran.scm (r-quickjsr): Update to 1.1.0.

Change-Id: Ic2fb19a11c781c25b63cc2ed1bf185201aca0fe8
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
e2284fa77d
gnu: r-cmplot: Update to 4.5.1. 
* gnu/packages/cran.scm (r-cmplot): Update to 4.5.1.

Change-Id: I34faf9e7c4b786aaae660ba18c65b429304db601
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
e8a7227004
gnu: r-nodbi: Update to 0.10.0. 
* gnu/packages/cran.scm (r-nodbi): Update to 0.10.0.
[propagated-inputs]: Add r-r-utils and r-v8.

Change-Id: I1cc2c0c99f15cde415c90fa8959f3e0ffc546458
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
4438bfd898
gnu: r-overlap: Update to 0.3.9. 
* gnu/packages/cran.scm (r-overlap): Update to 0.3.9.
[propagated-inputs]: Add r-suntools.

Change-Id: I3dc9817e0c7a5b4c4422e285aa5ccf4320047bd6
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
4dda10ae21
gnu: r-import: Update to 1.3.2. 
* gnu/packages/cran.scm (r-import): Update to 1.3.2.

Change-Id: Ic78d705b104683e14f3b1848ba0218bfcc6e8ab1
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
f4eb36050e
gnu: r-xts: Update to 0.13.2. 
* gnu/packages/cran.scm (r-xts): Update to 0.13.2.

Change-Id: I0f551d91a7012fabb117160c54e9c17883a48ca9
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
3d0fa8fb65
gnu: r-psych: Update to 2.4.1. 
* gnu/packages/cran.scm (r-psych): Update to 2.4.1.

Change-Id: Iebac111c7dd7a8bab9df6789c9861e499b4439d3
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
b12217b3d0
gnu: r-timechange: Update to 0.3.0. 
* gnu/packages/cran.scm (r-timechange): Update to 0.3.0.

Change-Id: I5c8dce37f2f268145b7288845ef0c7d1115eb445
 2024-01-23 13:36:47 +01:00
Ricardo Wurmus
254eb0d3fd
gnu: r-ctrdata: Update to 1.17.0. 
* gnu/packages/cran.scm (r-ctrdata): Update to 1.17.0.
[propagated-inputs]: Add r-digest.

Change-Id: I505ea3605193eb461001c8e58cd9ef8d725d8f63
 2024-01-23 13:36:46 +01:00
Ricardo Wurmus
5082ea45f9
gnu: r-ps: Update to 1.7.6. 
* gnu/packages/cran.scm (r-ps): Update to 1.7.6.

Change-Id: Id7ef2ce2c709c8bffb7d3257324390400d55b29e
 2024-01-23 13:36:46 +01:00
Ricardo Wurmus
e7aee059ad
gnu: r-paletteer: Update to 1.6.0. 
* gnu/packages/cran.scm (r-paletteer): Update to 1.6.0.

Change-Id: Iff3c0636541bf3deb7a50706a62a44331a77e820
 2024-01-23 13:36:46 +01:00
Ricardo Wurmus
704b793d82
gnu: r-gensa: Update to 1.1.14. 
* gnu/packages/cran.scm (r-gensa): Update to 1.1.14.

Change-Id: I6557eeb5f277908a25ded34321153ceddc927a09
 2024-01-23 13:36:46 +01:00
Ricardo Wurmus
d7a7054b7e
gnu: r-shadowtext: Update to 0.1.3. 
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.3.

Change-Id: I771671f689c247cbb7ade0ad0d2b78a6e28514ff
 2024-01-23 13:36:46 +01:00
Ricardo Wurmus
2e08d0d631
gnu: Add r-suntools. 
* gnu/packages/cran.scm (r-suntools): New variable.

Change-Id: Id1cb0828e8046ce635edc124c3f99bc891806cdd
 2024-01-23 13:36:46 +01:00
Ricardo Wurmus
f0d8d59807
gnu: r-antiword: Update to 1.3.2. 
* gnu/packages/cran.scm (r-antiword): Update to 1.3.2.
[source]: Simplify snippet.
[arguments]: Remove trailing #T from build phase.
[synopsis]: Change capitalization.
[description]: Use complete sentences.

Change-Id: I0cffbda247dd57462f89c20a94773f871a029b60
 2024-01-23 13:36:46 +01:00
Troy Figiel
6f6cfb8365
gnu: python-tdda: Remove relax-requirements phase. 
* gnu/packages/python-science.scm (python-tdda)[arguments]<#:phases>: Remove relax-requirements phase.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-22 21:48:28 +00:00
Sharlatan Hellseher
ffc5fefce3
gnu: python-evdev: Enable tests. 
* gnu/packages/linux.scm (python-evdev): Enable tests and apply new
package style.
[source]: Use git checkout which provides tests.
[build-system]: Swap to pyproject-build-system.
[arguments]<#:test-flags>: Silent tests requiring access to /dev/uinput.
<#:phases>: Remove trailing #t from lambda.
[native-inputs]: Add python-pytest.

Change-Id: I9474459428d94eefa501458d62f24c6918958515
 2024-01-22 21:31:32 +00:00
Gabriel Wicki
014d0541ae
gnu: python-evdev: Update to 1.5.0. 
* gnu/packages/linux.scm (python-evdev): Update to 1.5.0.

Change-Id: Id83c621f31222ebfb4848366b94e1f16c75742aa
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-22 21:03:15 +00:00
Ricardo Wurmus
40cff060fd
gnu: Add emacs-coterm. 
* gnu/packages/emacs-xyz.scm (emacs-coterm): New variable.

Change-Id: Ib96078fa906242dd532a0c949de3049b92804891
 2024-01-22 21:40:09 +01:00
Wilko Meyer
10a1935963
gnu: Remove linux-libre 4.14. 
* gnu/packages/linux.scm (linux-libre-4.14-version,
linux-libre-4.14-gnu-revision, deblob-scripts-4.14,
linux-libre-4.14-pristine-source, linux-libre-4.14-source,
linux-libre-headers-4.14, linux-libre-4.14, linux-libre-arm-generic-4.14,
linux-libre-arm-omap2plus-4.14): Remove variables.
* gnu/packages/aux-files/linux-libre/4.14-arm.conf,
gnu/packages/aux-files/linux-libre/4.14-i686.conf,
gnu/packages/aux-files/linux-libre/4.14-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove aforementioned .conf files.
* gnu/tests/base.scm (%test-linux-libre-4.14): Remove variable.

Change-Id: I40393b5f46b989848d569c929f1d9c986736553e
 2024-01-22 13:24:20 -05:00
Oleg Pykhalov
29c26a8d30
gnu: moonlight-qt: Update to 5.0.1. 
* gnu/packages/games.scm (moonlight-qt): Update to 5.0.1.
[arguments]<#:phases>: Update moonlight-qt.pro file substitute to not include
bundled h264bitstream library.

Change-Id: I9c68f7c6de39a0d78c6ef5b48d2272cdf3f771b5
 2024-01-22 19:12:43 +03:00
Oleg Pykhalov
e677aceb5d
gnu: moonlight-common: Update to 5.0.1-1.5de4a5b. 
* gnu/packages/games.scm (moonlight-common): Update to 5.0.1-1.5de4a5b.

Change-Id: I6b539162c0d57830d41059611746a7d376322345
 2024-01-22 19:12:43 +03:00
Oleg Pykhalov
d52d4b833a
gnu: h264bitstream: Update to 0.2.0-1.ae72f73. 
* gnu/packages/video.scm (h264bitstream): Update to 0.2.0-1.ae72f73.

Change-Id: I0aa9422f236995086275c492a2093f2acb894ab1
 2024-01-22 19:12:43 +03:00
David Thompson
9f80c86672
gnu: guile-goblins: Update to 0.12.0. 
* gnu/packages/guile-xyz.scm (guile-goblins): Update to 0.12.0.

Change-Id: I0768ca6118c8b16ea6e5ae235dfefa7d28f727e3
 2024-01-22 10:05:26 -05:00
muradm
1bdeec5d66
services: connman: Add 'connman-general-configuration'. 
Currently connman has no main.conf as specified in 'man 5 connman.conf' which
would allow setting NetworkInterfaceBalcklist and other useful options.

This patch adds connman-general-configuration, serializes it and
passes to connmad with --config= flag.

All configuration fields are 'maybe-*' deliberately, to not disturb current
users and not require supporting configuration changes for connmand.

* gnu/services/networking.scm (<connman-general-configuration>): New
configuration record to represent main.conf for connmand.
(<connman-configuration>)[general-configuration]: New field.
(connman-shepherd-service): Honor it.
*doc/guix.texi (Networking Services): Add generated configuration.

Change-Id: I5d78f49e8b2d5e0b3cbd7b8b604e8a254b6397e8
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2024-01-22 09:51:32 -05:00
muradm
2b04ebaa74
gnu: cgit: Fix patch-absolute-file-names phase. 
* gnu/packages/version-control.scm (cgit) [arguments]: Fix regexp in patch-absolute-file-names phase.

Change-Id: I06c624ba23bfd0b8ca45045d1d2155c53258047e
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2024-01-22 08:54:47 -05:00
Ricardo Wurmus
bafc6efe48
gnu: r-flowstats: Update to 4.14.1. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.14.1.

Change-Id: I0a5d93cb08d169759b3f3817ab9b68b76fd5883f
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
1849ed7487
gnu: r-flowworkspace: Update to 4.14.2. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.2.

Change-Id: I7d47b89fedf207b930fc8bef6aedcbce4628a2d9
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
522a646714
gnu: r-gosemsim: Update to 2.28.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.28.1.
[propagated-inputs]: Add r-yulab-utils.

Change-Id: Idf93e061ef43c2900a96fa9cafeaff95d13fa3be
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
500fc9e891
gnu: r-rhtslib: Update to 2.4.1. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.4.1.

Change-Id: If0da0bbfbbfcb2f41b354ba1772967f9fee778ca
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
c61e835022
gnu: r-edger: Update to 4.0.11. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.11.

Change-Id: I27638e6082286fa6e7876ce29ecf272d88402946
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
2d331f9ba0
gnu: r-tximportdata: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-tximportdata): Update to 1.30.0.

Change-Id: Id02981fc94304cade5dbdc4c13a78d7155e62408
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
2c5ea54d89
gnu: r-tcgabiolinksgui-data: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.22.0.

Change-Id: Icb4d98fb51bea7d14500b84928c3cd8876161d7c
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
ab9f9b582e
gnu: r-sesamedata: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-sesamedata): Update to 1.20.0.

Change-Id: Idc8ff7679495ede0dd037ef393300c7fe4787610
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
196e1f9025
gnu: r-parathyroidse: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-parathyroidse): Update to 1.40.0.

Change-Id: I2a012832f1d0ea4468497ed82c528af10d660391
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
71c4d03835
gnu: r-curatedtcgadata: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.24.0.

Change-Id: If094ca958ff73b6aecd39c3d91042e9e75eb2075
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
ffd1da975f
gnu: r-gagedata: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.40.0.

Change-Id: Ifdbcee3c7c6c354530d62cc79f05cf30be432f3a
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
e9a99d768b
gnu: r-affydata: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.50.0.

Change-Id: I653e146ff884bd72771ed779c4d9d65b03a7fdd9
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
aef69bfc03
gnu: r-all: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-all): Update to 1.44.0.

Change-Id: I9f2817b571d2c42d57927370b51319e52388a3b5
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
1d0674befe
gnu: r-hsmmsinglecell: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.22.0.

Change-Id: I541a4637f7ec9b6e85e52c8f222002adef230a50
 2024-01-22 13:54:46 +01:00
Ricardo Wurmus
54efc5bd86
gnu: r-pasilla: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.30.0.

Change-Id: I3d309814bc0237181540e1c84ad8feca34f2fcef
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
1deaa74a6f
gnu: r-msigdb: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-msigdb): Update to 1.10.0.

Change-Id: I32ad805ff92e7084eb682c239037978f183c323e
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
88beafd5dc
gnu: r-msdata: Update to 0.42.0. 
* gnu/packages/bioconductor.scm (r-msdata): Update to 0.42.0.

Change-Id: I94953464f1c9ef0e361c68a69fdbc9b11f46c4f8
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
13c2e3c9e4
gnu: r-minfidata: Update to 0.48.0. 
* gnu/packages/bioconductor.scm (r-minfidata): Update to 0.48.0.

Change-Id: I8485d570629d23b294a9ea4143a88ed91ae737af
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
cbb019eef6
gnu: r-mousegastrulationdata: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): Update to 1.16.0.

Change-Id: I18a4fe4dbbcf3cc7f19084170fc8280fd4d5e7cf
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
55b3f66131
gnu: r-macrophage: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-macrophage): Update to 1.18.0.

Change-Id: I51228161aac4cb10470aa2262fdc507a4cb903ec
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
0af8e69b32
gnu: r-italicsdata: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-italicsdata): Update to 2.40.0.

Change-Id: I55a0100167f98571a562c0ca5fddbe41afeaf3d7
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
f4f7b82c5e
gnu: r-illumina450probevariants-db: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): Update to 1.38.0.

Change-Id: Ic5af6f5e7ba653edc5ed785f2b3e9d522e7586af
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
da790d92e5
gnu: r-hdcytodata: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.22.0.

Change-Id: I06afd0ffdd8c1b77ce03e9aabe59f150c28e6141
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
c916f39b5c
gnu: r-genomationdata: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.34.0.

Change-Id: Ia8e4535efcdcbb0e706b1e9682594467ab8c2fda
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
8369898fb0
gnu: r-genelendatabase: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.38.0.

Change-Id: Idf120599c34af21cd3c5c854d434c93c702f0cd4
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
95c3baf59f
gnu: r-flowsorted-blood-epic: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): Update to 2.6.0.

Change-Id: I458aa7c0ac482d1e60d6afb66b236ea6886d7ce6
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
43e6cc3189
gnu: r-flowsorted-blood-450k: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): Update to 1.40.0.

Change-Id: Ia2d2ae18c80d3a4a7858026a424da1537d657782
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
4c4f07ca26
gnu: r-copyhelper: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.34.0.

Change-Id: I2cfa340e85fb723615295949ef614db1761f9c6e
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
f0591739ce
gnu: r-chromstardata: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.28.0.

Change-Id: I5146185d21a589b93152fe67df4e4a100a0b0a33
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
225f49fb30
gnu: r-champdata: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-champdata): Update to 2.34.0.

Change-Id: I658aab6c78df1fcbd7fb4d34df144635a2a10347
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
7b5db44490
gnu: r-celldex: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.12.0.

Change-Id: I565b21aafa46cb710a8acc3ab16b7905614e6838
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
1aac5e7bc8
gnu: r-breakpointrdata: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-breakpointrdata): Update to 1.20.0.

Change-Id: I1fe98a2e5fd8bf4b3106c7315dda8dee906c5152
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
6c1bb9047e
gnu: r-biscuiteerdata: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.16.0.
[propagated-inputs]: Add r-genomicranges.

Change-Id: I5459630b266f04bbac50562cb134e9ca28bbc2d7
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
cd5a4ac6df
gnu: r-bladderbatch: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bladderbatch): Update to 1.40.0.

Change-Id: I2d5ec797815dd0101da8692b1fa320020c33ab85
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
09ee801fe9
gnu: r-bcellviper: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.38.0.

Change-Id: Iaac28d6376364c0d0e30c29deb6df22c40b18b29
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
ee966f03d5
gnu: r-arrmdata: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.38.0.

Change-Id: Id1c900cd1a058057d18129c7f2d373bc4772d5cd
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
9512db59ab
gnu: r-aneufinderdata: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.30.0.

Change-Id: I94049747ac40bfe1926bfe6a34727c35e1fb6578
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
8f70c2352d
gnu: r-adductdata: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.18.0.

Change-Id: I268b9dde5e1913d17e195a77005e3c28b41f6aca
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
b6fb97a250
gnu: r-pfam-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.18.0.

Change-Id: Iee6ad8fe9188cb6eb5df5f163e5af228a783b682
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
f16f8105e8
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.18.0.

Change-Id: Ic11773dbb44ba5c90ea69142c03bbe7292ca03a6
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
5265421826
gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.5. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.5.
[propagated-inputs]: Add r-genomeinfodb.

Change-Id: I77c7e216286314619c05272a0baffb68dcd5a3e6
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
505aac07c4
gnu: r-org-mm-eg-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.18.0.

Change-Id: Idee9907070a23dd79bf77e2d4a7e8ac17419826a
 2024-01-22 13:54:45 +01:00
Ricardo Wurmus
f13e407689
gnu: r-org-dr-eg-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.18.0.

Change-Id: Icb7f74c83ff7189c7b02964fcb25bac6610fd790
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus
8445ad15ec
gnu: r-org-dm-eg-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.18.0.

Change-Id: Ic50a64af9d5b76a4c7cb8864e8e723c533218e19
 2024-01-22 13:54:44 +01:00
Ricardo Wurmus
0adeabcf53
gnu: r-org-ce-eg-db: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.18.0.

Change-Id: Id83d4e64b80ce01abdb2fe06735e0af6b7ebac10
 2024-01-22 13:54:44 +01:00