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81827 Commits

Author SHA1 Message Date
Christopher Baines
cd9ed85b17
gnu: nar-herder: Update to 0-5.e046f8a. 
* gnu/packages/package-management.scm (nar-herder): Update to 0-5.e046f8a.
[native-inputs, propagated-inputs]: Add guile-prometheus.
[arguments]: Wrap with guile-prometheus.
 2022-04-22 15:30:25 +01:00
Christopher Baines
770b7dafb3
gnu: guix-build-coordinator: Update to 0-51.fff7454. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-51.fff7454.
 2022-04-22 15:29:28 +01:00
Leo Famulari
eb34ff16cc
gnu: linux-libre 4.9: Update to 4.9.311. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.311.
(linux-libre-4.9-pristine-source): Update hash.
 2022-04-21 00:16:34 -04:00
Leo Famulari
87f525dc59
gnu: linux-libre 4.14: Update to 4.14.276. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.276.
(linux-libre-4.14-pristine-source): Update hash.
 2022-04-21 00:16:33 -04:00
Leo Famulari
b09de8d560
gnu: linux-libre 4.19: Update to 4.19.239. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.239.
(linux-libre-4.19-pristine-source): Update hash.
 2022-04-21 00:16:33 -04:00
Leo Famulari
36b2e0ad84
gnu: linux-libre 5.4: Update to 5.4.190. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.190.
(linux-libre-5.4-pristine-source): Update hash.
 2022-04-21 00:16:33 -04:00
Leo Famulari
c8b19d9783
gnu: linux-libre 5.10: Update to 5.10.112. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.112.
(linux-libre-5.10-pristine-source): Update hash.
 2022-04-21 00:16:33 -04:00
Leo Famulari
ca307517b6
gnu: linux-libre 5.15: Update to 5.15.35. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.35.
(linux-libre-5.15-pristine-source, deblob-scripts-5.15): Update hashes.
 2022-04-21 00:16:33 -04:00
Leo Famulari
c9bb210598
gnu: linux-libre 5.17: Update to 5.17.4. 
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.4.
(linux-libre-5.17-pristine-source, deblob-scripts-5.17): Update hashes.
 2022-04-21 00:16:33 -04:00
Vinicius Monego
5ca029d0c4
gnu: homebank: Update to 5.5.5. 
* gnu/packages/finance.scm (homebank): Update to 5.5.5.
 2022-04-20 23:40:44 -03:00
Vinicius Monego
144d803c76
gnu: gsequencer: Update to 3.18.2. 
* gnu/packages/music.scm (gsequencer): Update to 3.18.2.
 2022-04-20 23:40:44 -03:00
Vinicius Monego
54e0745703
gnu: pre-commit: Update to 2.18.1. 
* gnu/packages/version-control.scm (pre-commit): Update to 2.18.1.
 2022-04-20 23:40:34 -03:00
Vinicius Monego
d656ff473e
gnu: shotcut: Update to 22.03.30. 
* gnu/packages/video.scm (shotcut): Update to 22.03.30.
 2022-04-20 23:39:11 -03:00
Vinicius Monego
866f306cf5
gnu: mlt: Update to 7.6.0. 
* gnu/packages/video.scm (mlt): Update to 7.6.0.
 2022-04-20 23:39:11 -03:00
Fredrik Salomonsson
cd5c31d192
gnu: Add emacs-cpreproc. 
* gnu/packages/emacs-xyz.scm (emacs-cpreproc): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:45 +02:00
pukkamustard
ed2e797750
gnu: Add pikchr. 
* gnu/packages/pikchr.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:45 +02:00
Greg Hogan
bd6e9be532
gnu: aws-sdk-cpp: Update to 1.9.236. 
* gnu/packages/cpp.scm (aws-sdk-cpp): Update to 1.9.236.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:45 +02:00
Greg Hogan
c542d084c0
gnu: aws-crt-cpp: Update to 0.17.27. 
* gnu/packages/cpp.scm (aws-crt-cpp): Update to 0.17.27.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:45 +02:00
Greg Hogan
fe75dc2552
gnu: aws-c-mqtt: Update to 0.7.10. 
* gnu/packages/c.scm (aws-c-mqtt): Update to 0.7.10.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:45 +02:00
Greg Hogan
4773664eb8
gnu: aws-c-s3: Update to 0.1.38. 
* gnu/packages/c.scm (aws-c-s3): Update to 0.1.38.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:44 +02:00
Greg Hogan
d2cb3f9905
gnu: aws-c-auth: Update to 0.6.11. 
* gnu/packages/c.scm (aws-c-auth): Update to 0.6.11.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:44 +02:00
Greg Hogan
fbf1435587
gnu: aws-c-http: Update to 0.6.13. 
* gnu/packages/c.scm (aws-c-http): Update to 0.6.13.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:44 +02:00
Greg Hogan
4bd4c53aac
gnu: Add aws-c-sdkutils. 
* gnu/packages/c.scm (aws-c-sdkutils): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:44 +02:00
Greg Hogan
139970c806
gnu: aws-c-cal: Update to 0.5.17. 
* gnu/packages/c.scm (aws-c-cal): Update to 0.5.17.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:44 +02:00
Greg Hogan
7c45af91f4
gnu: aws-c-io: Update to 0.10.20. 
* gnu/packages/c.scm (aws-c-io): Update to 0.10.20.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:44 +02:00
Greg Hogan
f796dc9207
gnu: aws-c-common: Update to 0.6.20. 
* gnu/packages/c.scm (aws-c-common): Update to 0.6.20.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:44 +02:00
Greg Hogan
25a1c60b1c
gnu: aws-lc: Update to 1.0.2. 
* gnu/packages/tls.scm (aws-lc): Update to 1.0.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:43 +02:00
Greg Hogan
bc3e32454f
gnu: s2n: Update to 1.3.10. 
* gnu/packages/tls.scm (s2n): Update to 1.3.10.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:43 +02:00
Greg Hogan
a82b0741a3
gnu: folly: Update to 2022.04.11.00. 
* gnu/packages/cpp.scm (folly): Update to 2022.04.11.00.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:43 +02:00
Greg Hogan
a1362e674f
gnu: cxxopts: Update to 3.0.0. 
* gnu/packages/cpp.scm (cxxopts): Update to 3.0.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:43 +02:00
Attila Lendvai
8852f911ff
git-download: Set locale to deal with Unicode in git metadata. 
Without this the git-fetch GEXP is run in an environment that uses ASCII
character encoding when strings are crossing the Guile - C boundary.  It means
that e.g. tag names that have Unicode chars in them will cause problems,
e.g. when walking and deleting the .git directory.

An example in the wild: https://github.com/klauspost/pgzip/tags

Fixes <https://issues.guix.gnu.org/54893>.

* guix/git-download.scm (git-fetch): Call 'setenv' and 'setlocale' to
set it to en_US.utf8.
* gnu/packages/commencement.scm (glibc-utf8-locales-final): Make public.
Add 'properties' field.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-20 23:46:43 +02:00
Marius Bakke
8540c2d86c
gnu: ungoogled-chromium: Update to 100.0.4896.127-1. 
* gnu/packages/chromium.scm (%chromium-version): Set to 100.0.4896.127-1.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
 2022-04-20 18:26:56 +02:00
Eric Bavier
0cf1178a65
gnu: idris: Update to 1.3.4. 
* gnu/packages/patches/idris-build-with-haskeline-0.8.patch,
gnu/packages/patches/idris-build-with-megaparsec-9.patch,
gnu/packages/patches/idris-disable-test.patch: Delete patches.
* gnu/local.mk (dist_patch_DATA): Unregister them.
* gnu/packages/idris.scm (idris): Update to 1.3.4.
[source]: Use git-fetch.  Adjust patches.

Co-authored-by: Attila Lendvai <attila@lendvai.name>
 2022-04-20 08:35:48 -05:00
Eric Bavier
ae6cd99573
gnu: idris: Use cc-for-target. 
* gnu/packages/idris.scm (idris)[arguments]: Use cc-for-target in place of
"gcc".
 2022-04-20 08:35:48 -05:00
Eric Bavier
b2a66e1071
gnu: idris: Remove trailing #t. 
* gnu/packages/idris.scm (idris)[arguments]: Remove trailing #t.
 2022-04-20 08:35:48 -05:00
Thomas Albers Raviola
101edbe63a
gnu: Add cl-just-getopt-parser. 
* gnu/packages/lisp-xyz.scm (sbcl-just-getopt-parser,
  ecl-just-getopt-parser, cl-just-getopt-parser): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-20 13:31:28 +02:00
Efraim Flashner
ffb616b69d
gnu: vcflib: Update to 1.0.3. 
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.3.
[source]: Remove trailing #t.
[arguments]: Remove trailing #t from phases.
 2022-04-19 21:56:50 +03:00
Liliana Marie Prikler
0b681c5896
gnu: komikku: Update to 0.38.0. 
* gnu/packages/gnome.scm (komikku): Update to 0.38.0.
 2022-04-19 20:28:01 +02:00
Liliana Marie Prikler
6b4d37760e
gnu: openttd: Use new package style. 
* gnu/packages/games.scm (openttd)[arguments]: Convert to list of
G-Expressions.
<install-data>: Use search paths to find ‘/share/games/openttd’ input
directories.
[native-inputs]: Use modify-inputs.
 2022-04-19 20:28:01 +02:00
Liliana Marie Prikler
5376f3d058
gnu: openttd-openmsx: Use new package style. 
* gnu/packages/games.scm (openttd-openmsx)[arguments]: Convert to list of
G-Expressions.
[native-inputs]: Drop labels.
 2022-04-19 20:28:01 +02:00
Liliana Marie Prikler
4df82befc9
gnu: openttd-opensfx: Use new package style. 
* gnu/packages/games.scm (openttd-opensfx)[arguments]: Convert to list of
G-Expressions.  Drop trailing ‘#t’s.
[native-inputs]: Drop labels.
 2022-04-19 20:28:01 +02:00
Liliana Marie Prikler
2bae85d39b
gnu: openttd-gfx: Use new package style. 
* gnu/packages/games.scm (openttd-gfx)[arguments]: Convert to list of
G-Expressions.
[native-inputs]: Drop labels.
 2022-04-19 20:28:01 +02:00
Liliana Marie Prikler
a1acec2fe9
gnu: openttd-engine: Drop labels from inputs. 
* gnu/packages/games.scm (openttd-engine)[inputs]: Drop labels.
 2022-04-19 20:28:00 +02:00
Liliana Marie Prikler
f044d951b0
gnu: openttd: Let the music play. 
* gnu/packages/games.scm (openttd)[inputs]: Remove timidity++.
Add fluidsynth and freepats-gm.
[#:phases]<patch-sources>: New phase.
 2022-04-19 20:28:00 +02:00
Liliana Marie Prikler
e597612bf3
gnu: Add freepats-gm. 
* gnu/packages/audio.scm (freepats-gm): New variable.
 2022-04-19 20:28:00 +02:00
Liliana Marie Prikler
f2d0ecd22f
gnu: gnome-shell-extension-just-perfection: Update to 20.0. 
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-just-perfection): Update to 20.0.
 2022-04-19 20:28:00 +02:00
Efraim Flashner
cd23250c16
gnu: kmessagelib: Fix building. 
* gnu/packages/kde-pim.scm (kmessagelib)[arguments]: Adjust custom
'extend-CPUS_INCLUDE_PATH phase to specifically add libkdepim.
 2022-04-19 20:05:01 +03:00
Foo Chuan Wei
f03e08699c
gnu: polyml: Update to 5.9. 
* gnu/packages/sml.scm (polyml): Update to 5.9.
[arguments]<#:configure-flags>: Remove nonexistent options.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 18:07:49 +02:00
Efraim Flashner
72298df79d
gnu: Fix input typoes. 
* gnu/packages/emulators.scm (nestopia-ue)[inputs]: Move ',' to its
operand.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Same.
 2022-04-19 17:46:48 +03:00
Efraim Flashner
35b4926799
gnu: kwave: Build with librsvg-for-system. 
* gnu/packages/kde-multimedia.scm (kwave)[native-inputs]: Replace
librsvg with librsvg-for-system.
 2022-04-19 17:46:41 +03:00
Andreas Enge
bfe6d6ea66
gnu: lrslib: Update to 7.2. 
* gnu/packages/maths.scm (lrslib): Update to 7.2.
 2022-04-19 16:09:32 +02:00
Andreas Enge
073e0c399d
gnu: arb: Update to 2.22.1. 
* gnu/packages/algebra.scm (arb): Update to 2.22.1.
 2022-04-19 15:35:10 +02:00
Andreas Enge
30d8748ca2
gnu: pari-gp: Update to 2.13.4. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.13.4.
 2022-04-19 13:21:37 +02:00
Ludovic Courtès
09555d22ea
gnu: geary: Remove input labels. 
* gnu/packages/gnome.scm (geary)[inputs, native-inputs]: Remove labels.
 2022-04-19 12:29:45 +02:00
Rene Saavedra
19f4497cb6
gnu: geary: Add missing input. 
* gnu/packages/gnome.scm (geary)[native-inputs]: Add python for configure phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:45 +02:00
jgart
85c5033316
gnu: libtcod: Remove trailing boolean. 
* gnu/packages/game-development.scm (libtcod): Remove trailing boolean.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience
d262a258bb
gnu: nomad-optimizer: Fix some tests. 
* gnu/packages/maths.scm (nomad-optimizer)[arguments]<#:phases>
[fix-sources-for-tests]: Enable the pipefail option in the (generated)
script that runs tests. Enable the basic batch example3 test. Fix the
advanced library FixedVariable test (and seemingly the neighbor PSDMads
test). Expand some comments.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience
11e761b9a6
gnu: nomad-optimizer: Update to 4.2.0. 
* gnu/packages/maths.scm (nomad-optimizer): Update to 4.2.0.
[arguments]: Accommodate updated build process.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience
3a6703268b
gnu: nomad-optimizer: Remove trailing booleans. 
* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Remove trailing
booleans.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience
3a9b925f44
gnu: nomad-optimizer: Remove input labels. 
* gnu/packages/maths.scm (nomad-optimizer)[native-inputs]: Remove
labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience
d483dbe0fa
gnu: gmsh: Update to 4.9.5. 
* gnu/packages/maths.scm (gmsh): Update to 4.9.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience
267176babc
gnu: asymptote: Update to 2.80. 
* gnu/packages/plotutils.scm (asymptote): Update to 2.80.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:43 +02:00
Paul A. Patience
7488c73dd2
gnu: gnuplot: Update to 5.4.3. 
* gnu/packages/maths.scm (gnuplot): Update to 5.4.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:43 +02:00
Jonathan Brielmaier
b24961717b
gnu: nheko: Update to 0.9.3. 
* gnu/packages/messaging.scm (nheko): Update to 0.9.3.
 2022-04-19 12:11:08 +02:00
Michael Rohleder
f2239f3b95
gnu: emacs-chess: Fix path to pieces. 
* gnu/packages/emacs-xyz.scm (emacs-chess)[arguments]: Fix path to pieces in
phase install-pieces.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-18 23:25:18 +02:00
Peter Polidoro
283088f7b1
gnu: Add python-sre-yield. 
* gnu/packages/python-xyz.scm (python-sre-yield): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-18 23:23:54 +02:00
Peter Polidoro
fc2d94a3f9
gnu: Add python-ajsonrpc. 
* gnu/packages/python-web.scm (python-ajsonrpc): New variable.
 2022-04-18 23:17:11 +02:00
Peter Polidoro
2aa5329023
gnu: Add python-quart. 
* gnu/packages/python-web.scm (python-quart): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-18 23:14:37 +02:00
jgart
a76c879f14
gnu: janet: Update to 1.21.1. 
* gnu/packages/lisp.scm (janet): Update to 1.21.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-18 23:09:39 +02:00
Michael Rohleder
81ba7e6a45
gnu: mousepad: Update to 0.5.9. 
* gnu/packages/xfce.scm (mousepad): Update to 0.5.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-18 23:08:11 +02:00
Michael Rohleder
355982a3f5
gnu: orage: Update to 4.16.0. 
* gnu/packages/xfce.scm (orage): Update to 4.16.0.
[arguments]: Remove unneeded phase fix-build-with-libical3.
[native-inputs]: Add glib:bin for dbus-binding-tool.
[inputs]: Add dbus-glib for dbus support, libxfce4ui.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-18 23:07:55 +02:00
Felix Gruber
617d8a836f
gnu: Remove python-pyyaml-for-awscli. 
* gnu/packages/python-xyz.scm (python-pyyaml-for-awscli): Remove
  variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-18 23:02:39 +02:00
Felix Gruber
4810100db6
gnu: Remove python-botocore-for-awscli. 
* gnu/packages/python-xyz.scm (python-botocore-for-awscli): Remove
  variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-18 23:02:35 +02:00
Felix Gruber
7cf080aa71
gnu: awscli: Update to 1.22.90. 
* gnu/packages/python-web.scm (awscli): Update to 1.22.90.
[arguments] Use search-input-file to find groff.
[inputs]: Replace python-botocore-for-awscli with python-botocore.
Add groff.
[native-inputs]: Remove groff.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-18 23:02:29 +02:00
Felix Gruber
b0ec23afb7
gnu: python-jmespath: Update to 1.0.0. 
* gnu/packages/python-xyz.scm (python-jmespath): Update to 1.0.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-18 23:02:23 +02:00
Ludovic Courtès
5389c5ea57
gnu: nss-certs: Support cross-compilation. 
Reported by phodina <phodina@protonmail.com>.

* gnu/packages/certs.scm (nss-certs)[arguments]: In 'install' phase, do
not refer to '%output' when cross-compiling.
 2022-04-18 22:58:06 +02:00
Petr Hodina
902099a8c0
gnu: ntp: Support cross-compilation. 
* gnu/packages/ntp.scm (ntp)[arguments]: Add configuration flag.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-18 22:57:18 +02:00
Danny Milosavljevic
237d90a780
gnu: openjdk17: Make big cursors work. 
* gnu/packages/java.scm (openjdk17)[source]: Add patch.
 2022-04-18 12:59:04 +02:00
Danny Milosavljevic
aa01b37ef6
gnu: openjdk16: Make big cursors work. 
* gnu/packages/java.scm (openjdk16)[source]: Add patch.
 2022-04-18 12:59:04 +02:00
Danny Milosavljevic
f4dd7bf94e
gnu: openjdk15: Make big cursors work. 
* gnu/packages/patches/openjdk-15-xcursor-no-dynamic.patch: New file.
* gnu/local.mk (dist_patch_DATA):  Add it.
* gnu/packages/java.scm (openjdk15)[source]: Add it.
 2022-04-18 12:58:57 +02:00
jgart
b629b30269
gnu: Add cl-ipfs-api2. 
* gnu/packages/lisp-xyz.scm (cl-ipfs-api2, ecl-cl-ipfs-api2,
  sbcl-cl-ipfs-api2): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-18 09:26:36 +02:00
Leo Famulari
31f42393e8
gnu: Mutt: Update to 2.2.3 [fixes CVE-2022-1328]. 
https://gitlab.com/muttmua/mutt/-/issues/404

* gnu/packages/mail.scm (mutt): Update to 2.2.3.
 2022-04-18 00:24:01 -04:00
Greg Hogan
93f0b31a99
gnu: ccache: Update to 4.6. 
* gnu/packages/ccache.scm (ccache): Update to 4.6.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-04-17 17:59:23 +03:00
Raghav Gururajan
e5174200c4
gnu: gnucash: Update to 4.10. 
Variables gnucash and gnucash-docs have to be updated together.

* gnu/packages/gnucash.scm (gnucash)[version]: Update to 4.10.
(gnucash-docs)[version]: Update to 4.10.
[build-system]: Migrate from gnu to cmake.
[arguments]: Disable tests.
 2022-04-17 05:03:00 -04:00
Leo Famulari
0c89fe9e17
gnu: linux-libre 4.19: Update to 4.19.238. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.238.
(linux-libre-4.19-pristine-source): Update hash.
 2022-04-16 11:27:50 -04:00
Leo Famulari
d5adbf6c9f
gnu: linux-libre 5.4: Update to 5.4.189. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.189.
(linux-libre-5.4-pristine-source): Update hash.
 2022-04-16 11:27:44 -04:00
Guillaume Le Vaillant
7eb9176a6e
gnu: bitcoin-unlimited: Update to 1.10.0.0. 
* gnu/packages/finance.scm (bitcoin-unlimited): Update to 1.10.0.0.
  [arguments]: Update 'fix-tests' phase.
 2022-04-16 11:49:48 +02:00
Guillaume Le Vaillant
4bd3fdda63
gnu: electrum: Update to 4.2.1. 
* gnu/packages/finance.scm (electrum): Update to 4.2.1.
  [inputs]: Replace python-aiorpcx-0.18 by python-aiorpcx. Add zbar.
 2022-04-16 11:26:48 +02:00
Guillaume Le Vaillant
6be6ea4276
gnu: electron-cash: Update to 4.2.7. 
* gnu/packages/finance.scm (electron-cash): Update to 4.2.7.
 2022-04-16 11:12:17 +02:00
Dominic Martinez
6db5787120
gnu: emacs-message-view-patch: Update to 0.2.0-40bc2e5 
* gnu/packages/emacs-xyz (emacs-message-view-patch): Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:03 +02:00
Dominic Martinez
c6c0c985d3
gnu: emacs-mu4e-patch: Rename to emacs-message-view-patch 
The name was changed upstream to reflect that this extension works for both
mu4e and gnus.

* gnu/packages/emacs-xyz.scm (emacs-mu4e-patch): Deprecate it.
(emacs-message-view-patch): Renamed from emacs-mu4e-patch. Description,
synopsis, and inputs adjusted to reflect that mu4e is not required.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:03 +02:00
Michael Rohleder
6995d68435
gnu: xfce4-diskperf-plugin: Update to 2.7.0. 
* gnu/packages/xfce.scm (xfce4-diskperf-plugin): Update to 2.7.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:03 +02:00
Michael Rohleder
3b2ea81894
gnu: elementary-xfce-icon-theme: Update to 0.16. 
* gnu/packages/xfce.scm (elementary-xfce-icon-theme): Update to 0.16.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:02 +02:00
Zhu Zihao
0495819926
gnu: xfce4-terminal: Update to 1.0.0. 
* gnu/packages/xfce.scm (xfce4-terminal): Update to 1.0.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:02 +02:00
Vincent Prat
4ed02d571a
gnu: Add python-verspec. 
* gnu/packages/python.xyz.scm (python-verspec): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:02 +02:00
Vincent Prat
304c6b395c
gnu: Add python-shtab. 
* gnu/packages/python-xyz.scm (python-shtab): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:02 +02:00
Ludovic Courtès
6e174c4edd
gnu: shepherd: Support cross-compilation. 
Reported by phodina <phodina@protonmail.com>.

* gnu/packages/admin.scm (shepherd-0.9)[arguments]: New field.
[native-inputs]: Add GUILE-FIBERS-1.1.
 2022-04-15 19:13:02 +02:00
B. Wilson
35a1de1a4c
gnu: mblaze: Offer contrib executables. 
* gnu/packages/mail.scm (mblaze)[outputs, inputs]: New fields.
[arguments]: Add #:modules.  Add 'install-contrib' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:02 +02:00
Chadwain Holness
ff3355dcbf
gnu: streamlink: Update to 3.2.0. 
* gnu/packages/video.scm (streamlink): Update to 3.2.0.
[inputs]: Add python-lxml and python-pycountry, remove python-iso3166 and python-iso639.
[arguments]<#:phases>{check}: Use pytest.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:01 +02:00
Ludovic Courtès
ee617c4800
gnu: python-lxml: Add 4.7.1. 
* gnu/packages/xml.scm (python-lxml-4.7): New variable.
 2022-04-15 19:13:01 +02:00
André A. Gomes
179a949e60
gnu: cl-nfiles: Update to 0.4.0. 
* gnu/packages/lisp-xyz.scm (sbcl-nfiles): Update to 0.4.0.
  [inputs]: Add sbcl-quri.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-15 17:09:03 +02:00
Efraim Flashner
53a8e8fd6c
gnu: python-hmmlearn: Remove cythonized file. 
* gnu/packages/machine-learning.scm (python-hmmlearn)[source]: Add
snippet to remove cythonized file.
 2022-04-15 02:11:03 +03:00
Efraim Flashner
ac5f070631
gnu: python-aiohttp: Remove cythonized files. 
* gnu/packages/python-web.scm (python-aiohttp)[source]: Add snippet to
remove cythonized files.
 2022-04-14 23:30:27 +03:00
Efraim Flashner
802c94034c
gnu: python-pywavelets: Remove cythonized files. 
* gnu/packages/python-xyz.scm (python-pywavelets)[source]: Add snippet
to remove cythonized files.
[native-inputs]: Add python-cython.
 2022-04-14 23:23:18 +03:00
Efraim Flashner
6083372f61
gnu: python-igraph: Update to 0.9.10. 
* gnu/packages/graph.scm (python-igraph): Update to 0.9.10.
 2022-04-14 22:57:49 +03:00
Efraim Flashner
d6a5bdf000
gnu: igraph: Update to 0.9.8. 
* gnu/packages/graph.scm (igraph): Update to 0.9.8.
 2022-04-14 22:57:06 +03:00
Efraim Flashner
7034746e15
gnu: scregseg: Remove cythonized file. 
* gnu/packages/bioinformatics.scm (scregseg)[source]: Add snippet to
remove cythonized file.
 2022-04-14 22:55:33 +03:00
Paul A. Patience
5059e7f01e
gnu: cl-py4cl: Update to 0.0.0-1.2f2a008. 
* gnu/packages/lisp-xyz.scm (sbcl-py4cl): Update to 0.0.0-1.2f2a008.
  [arguments]<#:phases>: Adjust substitutions to renamed files.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-14 20:31:59 +02:00
jgart
8f5b2f0693
gnu: Add emacs-org-modern. 
* gnu/packages/emacs-xyz.scm (emacs-org-modern): New variable.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
 2022-04-14 11:34:03 -04:00
Paul A. Patience
0ddca9d682
gnu: Add cl-numpy-file-format. 
* gnu/packages/lisp-xyz.scm (cl-numpy-file-format, ecl-numpy-file-format,
  sbcl-numpy-file-format): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-14 16:33:52 +02:00
Foo Chuan Wei
0f6aaf2f62
gnu: cl-who: Update to 1.1.4-3.07dafe9. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-who): Update to 1.1.4-3.07dafe9.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-14 16:33:52 +02:00
Leo Famulari
6bf6529792
gnu: linux-libre 5.10: Update to 5.10.111. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.111.
(linux-libre-5.10-pristine-source): Update hash.
 2022-04-14 10:22:54 -04:00
Leo Famulari
0b20c8e071
gnu: linux-libre 5.15: Update to 5.15.34. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.34.
(linux-libre-5.15-pristine-source): Update hash.
 2022-04-14 10:22:54 -04:00
Leo Famulari
1b7f05f72c
gnu: linux-libre: Update to 5.16.20. 
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.20.
(linux-libre-5.16-pristine-source): Update hash.
 2022-04-14 10:22:54 -04:00
Leo Famulari
0a3fee824b
gnu: linux-libre 5.17: Update to 5.17.3. 
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.3.
(linux-libre-5.17-pristine-source): Update hash.
 2022-04-14 10:22:54 -04:00
Leo Famulari
aaf4b08c6b
gnu: Update linux-libre 5.17 configuration files. 
This option that adds new hardware support appeared after the 5.17 release.

* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: Enable support for Realtek
Ethernet switch chips.
 2022-04-14 10:22:54 -04:00
Mădălin Ionel Patrașcu
b0dd06bd0c
gnu: Add r-xcir. 
* gnu/packages/bioconductor.scm (r-xcir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 14:53:17 +02:00
Ludovic Courtès
16372cb347
gnu: sundials: Remove input labels. 
* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
 2022-04-14 14:48:21 +02:00
Ludovic Courtès
61bcd648ca
gnu: sundials: Update to 6.1.1. 
* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags.  Change "MPI_ENABLE" to "ENABLE_MPI".
 2022-04-14 14:48:21 +02:00
Ludovic Courtès
1f82602153
gnu: guile-fibers@1.1: Support cross-compilation. 
Fixes <https://issues.guix.gnu.org/54793>.
Reported by Mathieu Othacehe <othacehe@gnu.org>.

* gnu/packages/guile-xyz.scm (guile-fibers-1.1)[arguments]: Add
'support-cross-compilation' phase.
 2022-04-14 14:48:20 +02:00
Ricardo Wurmus
919cecd00b
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19):
Move this variable up to the annotation section.
 2022-04-14 13:38:30 +02:00
Ricardo Wurmus
03009f2a2b
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move
this variable up to the annotation section.
 2022-04-14 13:37:23 +02:00
Ricardo Wurmus
c8a6e4abbc
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics). 
* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
 2022-04-14 13:35:22 +02:00
Ricardo Wurmus
aafd0d2309
gnu: r-absseq: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
 2022-04-14 13:34:11 +02:00
Ricardo Wurmus
ed3697c040
gnu: r-abarray: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-abarray): Move definition out of
experiments section.
 2022-04-14 13:32:52 +02:00
Ricardo Wurmus
67941709e2
gnu: r-aneufinder: Move to packages section. 
* gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of
the section for Bioconductor experiments packages.
 2022-04-14 13:31:33 +02:00
Mădălin Ionel Patrașcu
cab6657094
gnu: Add r-absseq. 
* gnu/packages/bioconductor.scm (r-absseq): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:29:48 +02:00
Mădălin Ionel Patrașcu
a436582124
gnu: Add r-abarray. 
* gnu/packages/bioconductor.scm (r-abarray): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:20:07 +02:00
Mădălin Ionel Patrașcu
1b2b1c30e2
gnu: Add r-acde. 
* gnu/packages/bioconductor.scm (r-acde): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:18:07 +02:00
Mădălin Ionel Patrașcu
dd9d26bce6
gnu: Add r-wppi. 
* gnu/packages/bioconductor.scm (r-wppi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 12:47:24 +02:00
Mădălin Ionel Patrașcu
55be5fc400
gnu: Add r-acme. 
* gnu/packages/bioconductor.scm (r-acme): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 12:33:27 +02:00
Mădălin Ionel Patrașcu
08df30f232
gnu: Add r-acgh. 
* gnu/packages/bioconductor.scm (r-acgh): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:59:15 +02:00
Attila Lendvai
50046194a2
gnu: libfprint: Fix build, add python for the tests. 
* gnu/packages/freedesktop.scm (libfprint)[native-inputs]: Add python-minimal
as it's needed by the tests.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:54:11 +02:00
Mădălin Ionel Patrașcu
839241501a
gnu: Add r-ace. 
* gnu/packages/bioconductor.scm (r-ace): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:50:34 +02:00
Mădălin Ionel Patrașcu
7d990e775e
gnu: r-catalyst: Update description. 
* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup
and clarify a sentence.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:43:24 +02:00
Ricardo Wurmus
d85146c9df
gnu: r-tcgabiolinks: Update to 2.22.4. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.4.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
5acc125305
gnu: r-omnipathr: Update to 3.2.8. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.8.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
2def20d3ae
gnu: r-bgeedb: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.1.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
c7cb92e494
gnu: r-gviz: Update to 1.38.4. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.4.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
3c7e190eea
gnu: r-catalyst: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
3e07fbf32a
gnu: r-mscoreutils: Update to 1.6.2. 
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.2.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
40735701a8
gnu: r-singler: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-singler): Update to 1.8.1.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
2a71a7b961
gnu: r-s4vectors: Update to 0.32.4. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.4.
 2022-04-14 11:29:40 +02:00
Ricardo Wurmus
51ddaf48e8
gnu: r-experimenthub: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
c9e925d444
gnu: r-universalmotif: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.4.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
eadb1f53e9
gnu: r-variancepartition: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.1.
[propagated-inputs]: Add r-aod, r-rdpack, and r-rhpcblasctl.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
9950ed71fc
gnu: r-cytolib: Update to 2.6.2. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.2.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
0861d4fff5
gnu: r-rsubread: Update to 2.8.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.2.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
cb30400097
gnu: r-ropls: Update to 1.26.4. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.4.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
0c478f50f2
gnu: r-birewire: Update to 3.26.5. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.5.
[propagated-inputs]: Remove r-tsne; add r-rtsne.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
b446be46ba
gnu: r-biocfilecache: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
5576a98b6a
gnu: r-massspecwavelet: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
6f2d89fb40
gnu: r-atacseqqc: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
88ed3fc340
gnu: r-genomicscores: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
e129f579f5
gnu: r-clusterprofiler: Update to 4.2.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.2.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus
21037105ac
gnu: r-enrichplot: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.2.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
f8a38e8380
gnu: r-geoquery: Update to 2.62.2. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.2.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
fe6a8b4338
gnu: r-karyoploter: Update to 1.20.3. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.3.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
84c0ec875c
gnu: r-destiny: Update to 3.8.1. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.1.
[native-inputs]: Add r-knitr.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
d625f52bca
gnu: r-chippeakanno: Update to 3.28.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
f7d7ba3613
gnu: r-diffbind: Update to 3.4.11. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.11.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
cf46f2c331
gnu: r-systempiper: Update to 2.0.8. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.8.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
43053e08da
gnu: r-stringdb: Update to 2.6.5. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.6.5.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
a3ddba54fd
gnu: r-slingshot: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
6dad28d221
gnu: r-rhdf5: Update to 2.38.1. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus
30027f837d
gnu: r-regioner: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
06d13cf4b0
gnu: r-msnbase: Update to 2.20.4. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.4.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
e586613384
gnu: r-mutationalpatterns: Update to 3.4.1. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
78f7de977a
gnu: r-limma: Update to 3.50.3. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.3.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
68c1c989b6
gnu: r-genomicfeatures: Update to 1.46.5. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.5.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
455636fecd
gnu: r-genomeinfodb: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
9000c8acc2
gnu: r-ensembldb: Update to 2.18.4. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.4.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
e4816bcaed
gnu: r-biomart: Update to 2.50.3. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.3.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
ac67d0a467
gnu: r-annotationhub: Update to 3.2.2. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.2.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
4353404e21
gnu: Add r-aod. 
* gnu/packages/cran.scm (r-aod): New variable.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus
f6bc281cd7
gnu: r-tricycle: Move out of annotation packages. 
* gnu/packages/bioconductor.scm (r-tricycle): Move definition out of the
section containing annotation packages.
 2022-04-14 06:55:20 +02:00
Efraim Flashner
5743d50583
gnu: gama: Update to 2.18. 
* gnu/packages/gps.scm (gama): Update to 2.18.
 2022-04-13 23:53:18 +03:00
Eric Bavier
b5e32d9620
gnu: idris: Fixes test failure. 
* gnu/packages/patches/idris-test-ffi008.patch: New file.
* gnu/packages/idris.scm (source): Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
 2022-04-13 09:48:04 -05:00
Leo Famulari
8d82d817bc
gnu: nginx: Update to 1.21.6. 
* gnu/packages/web.scm (nginx): Update to 1.21.6.
(nginx-documentation): Update to 1.21.6-2829-1ecf0e0526da.
 2022-04-13 10:30:21 -04:00
Foo Chuan Wei
4996104189
gnu: Add cl-simple-routes. 
* gnu/packages/lisp-xyz.scm (cl-simple-routes, ecl-simple-routes,
  sbcl-simple-routes): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-13 13:42:35 +02:00
Ricardo Wurmus
fc89b50b7b
gnu: awscli: Do not propagate inputs. 
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Move all inputs
from here...
[inputs]: ...to here.
 2022-04-13 09:26:47 +02:00
Ricardo Wurmus
21cd4c704e
gnu: awscli: Use PyYAML 6. 
This should be fine because all uses of yaml.load supply the now mandatory
loader argument.

* gnu/packages/python-web.scm (awscli)[arguments]: Add phase
'use-recent-pyyaml.
[propagated-inputs]: Replace python-pyyaml-for-awscli with python-pyyaml.
 2022-04-13 09:25:13 +02:00
Maxim Cournoyer
7bd5394bf8
gnu: wpewebkit: Update to 2.36.0. 
* gnu/packages/webkit.scm (%webkit-version): New variable.
(wpewebkit): Update to 2.36.0, rewriting package to inherit from webkitgtk.
(webkitgtk)[source]: Use %webkit-version, and adjust definition to match that
of wpewebkit.
 2022-04-12 23:18:12 -04:00
Maxim Cournoyer
4ec7aac483
gnu: webkitgtk: Update to 2.36.0 and enable extra features. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.36.0.
[source]: Remove the webkitgtk-bind-all-fonts.patch and
webkitgtk-canonicalize-paths.patch patches.
[arguments]: Use gexp.
[tests?]: Update comment.
[build-type]: Add explanatory comment.
[configure-flags]: Enable gamepad support,  remove nonexistent
USE_SYSTEMD option and enable mini-browser.
[phases]{do-not-disable-new-dtags}: New phase.
{help-cmake-find-elogind}: Likewise.
{patch-gtk-doc-scan}: Simplify to avoid for-each.  Locate docbookx.dtd via
search-input-file.
{embed-absolute-wpebackend-reference}: Use search-input-file.
[native-inputs]: Use new style.
[inputs]: Likewise.  Add elogind and libmanette.
[description]: Adjust indentation.
(webkitgtk-with-libsoup2): Re-format comment, fixing spacing.
[configure-flags]: Use gexp.
[propagated-inputs]: Use modify-inputs to replace libsoup with
libsoup-minimal-2.
* gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Delete file.
* gnu/packages/patches/webkitgtk-canonicalize-paths.patch: Likewise.
* gnu/local.mk: De-register them.
 2022-04-12 23:18:12 -04:00
Maxim Cournoyer
322e23e600
gnu: woff2: Propagate brotli. 
* gnu/packages/fontutils.scm (woff2)[phases]: Delete trailing #t.
[inputs]: Move brotli to ...
[propagated-inputs]: ... here.
 2022-04-12 23:18:12 -04:00
Leo Famulari
a62f0f6d85
gnu: linux-libre 4.9: Update to 4.9.310. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.310.
(linux-libre-4.9-pristine-source): Update hash.
 2022-04-12 22:39:16 -04:00
terramorpha
950f3e4f98
gnu: Add smtpmail. 
* gnu/packages/mail.scm (smtpmail): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-12 23:55:14 +02:00
Olivier Dion
1885f8035a
gnu: Add librseq. 
* gnu/packages/engineering.scm (librseq): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-12 23:42:40 +02:00
Ricardo Wurmus
6a69e41c17
gnu: python-moto: Update to 3.1.4. 
* gnu/packages/python-xyz.scm (python-moto): Update to 3.1.4.
[arguments]: Adjust disabled tests.
[native-inputs]: Remove python-parameterized; add python-graphql-core.
[propagated-inputs]: Remove python-boto, python-idna, python-mock, and
python-six; add python-importlib-metadata and python-markupsafe.
 2022-04-12 23:12:22 +02:00
Ricardo Wurmus
2c37975fcc
gnu: awscli: Use older version of botocore. 
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Replace
python-botocore with python-botocore-for-awscli.
 2022-04-12 23:12:22 +02:00
Ricardo Wurmus
e8a99abf41
gnu: python-botocore: Update to 1.24.35. 
* gnu/packages/python-xyz.scm (python-botocore): Update to 1.24.35.
 2022-04-12 23:12:22 +02:00
Ricardo Wurmus
8a6c012deb
gnu: python-boto3: Update to 1.21.35. 
* gnu/packages/python-xyz.scm (python-boto3): Update to 1.21.35.
[arguments]: Override 'check phase.
 2022-04-12 23:12:22 +02:00
Ricardo Wurmus
9320410d76
gnu: Add python-botocore-for-awscli. 
* gnu/packages/python-xyz.scm (python-botocore-for-awscli): New variable.
 2022-04-12 23:12:22 +02:00
Ricardo Wurmus
797478f77b
gnu: awscli: Use older pyyaml. 
* gnu/packages/python-web.scm (awscli)[propagated-inputs]: Replace
python-pyyaml with python-pyyaml-for-awscli.
 2022-04-12 23:12:22 +02:00
Ricardo Wurmus
7fcb16e9d4
gnu: Add python-pyyaml-for-awscli. 
* gnu/packages/python-xyz.scm (python-pyyaml-for-awscli): New variable.
 2022-04-12 23:12:22 +02:00
Liliana Marie Prikler
1be7f43756
gnu: libressl: Update to 3.3.6. 
* gnu/packages/tls.scm (libressl): Update to 3.3.6.
 2022-04-12 20:32:31 +02:00
Roman Riabenko
b0f477b8a3
gnu: games: Add robotfindskitten. 
* gnu/packages/games.scm (robotfindskitten): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-04-12 20:31:33 +02:00
Ricardo Wurmus
8550976832
gnu: r-rbowtie: Fix build on architectures other than x86_64. 
* gnu/packages/bioconductor.scm (r-rbowtie)[arguments]: Disable use of popcnt
on systems other than x86_64.
 2022-04-12 16:00:01 +02:00
Ricardo Wurmus
dabd0d793c
gnu: r-rlrsim: Update to 3.1-8. 
* gnu/packages/statistics.scm (r-rlrsim): Update to 3.1-8.
 2022-04-12 16:00:01 +02:00
Ricardo Wurmus
59e94c9bee
gnu: r-norm: Update to 1.0-10.0. 
* gnu/packages/statistics.scm (r-norm): Update to 1.0-10.0.
 2022-04-12 16:00:01 +02:00