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Author SHA1 Message Date
Ricardo Wurmus
44765e6f2c
gnu: r-biocgenerics: Update to 0.48.1. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.48.1.

Change-Id: Ia2721e9ecbc2f4649962c4b4b5297616fbb5b169
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
278a436a00
gnu: r-biocversion: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.18.0.

Change-Id: Ic343f3a797330ae85ce86166805189d5738107f2
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
268cf54fbf
gnu: r-barcodetrackr: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.10.0.

Change-Id: Ia3ad0d4069441dd9a0b6a93f26e4791eae3ab408
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
fed0d240b5
gnu: r-banocc: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.26.0.

Change-Id: I4f20020f49a3eeba9b97a1154b7772ee5232cb82
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
70f14dd31e
gnu: r-bandits: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.18.0.

Change-Id: Iafbafd9f7275b9936fa73d47f0b47a1a4ec6ea7a
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
7bd373b25e
gnu: r-bambu: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.4.0.

Change-Id: I14837124a4a081c29e696ad47e27aaf9d62127b1
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
caa56d8e98
gnu: r-badregionfinder: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.30.0.

Change-Id: I24f656ea77622211c04a4c09a7bb541159680b8a
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
e777951d2b
gnu: r-bader: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bader): Update to 1.40.0.

Change-Id: I4aff6ebbbdfba705b97c0cf8b7a1166f855bafe6
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
3eb6468e63
gnu: r-basespacer: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.46.0.

Change-Id: I22960b809658603aec589daa7c85acc960727bd4
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
f93200960b
gnu: r-baalchip: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.28.0.

Change-Id: Ice6916945c94202938b763e4cbabac35385375fd
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
319d9c6cd3
gnu: r-awst: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-awst): Update to 1.10.0.

Change-Id: I077dabb772d8a9c547e6ac23622b78c3c319f3cc
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
35fe2b495d
gnu: r-awfisher: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.16.0.

Change-Id: I08e4f96c8db4758aa0ef04a46fdd715bfcd76fd7
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
601f91b94d
gnu: r-attract: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-attract): Update to 1.54.0.

Change-Id: Ie8cfd6d7c45b6a92bc2c4789e7b2d088da470118
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
e1487a6e2a
gnu: r-atsnp: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.18.0.

Change-Id: Ic703de99af48a7b95142b2fdfdf01a32490acf5e
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
74d22e52ce
gnu: r-atena: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-atena): Update to 1.8.0.

Change-Id: I99ef991a397053999dc4216189a76caf34e1b6c5
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
46b96b9383
gnu: r-asset: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-asset): Update to 2.20.0.

Change-Id: If9a92e17b7a5c7328d6352140bdd8732d4c2a78c
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
42dea0bd0a
gnu: r-assessorf: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.20.0.

Change-Id: I4beb9578807bc9cb433606c06f5505bc180770f7
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
2688eb505d
gnu: r-aspli: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.12.0.

Change-Id: I717b99ed6a348749b2549f2386f793b11106d0e2
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
fa5b2b5dbc
gnu: r-asics: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-asics): Update to 2.18.0.

Change-Id: Id9be760027609e1aa5729969e24e97b34f3141d9
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
9209b772b5
gnu: r-asgsca: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.36.0.

Change-Id: I0bcb7970cf29513a7551134c9b425cda337320ed
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
67db607930
gnu: r-aseb: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.46.0.

Change-Id: I375a4de7c9836fbf851ca033e7ab4ce25cb857a0
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
dc87880cb2
gnu: r-asafe: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.28.0.

Change-Id: If9d94cbb09fb2872fdf5224df95495666c2820c9
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
fc79ff45b1
gnu: r-arrayquality: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-arrayquality): Update to 1.80.0.

Change-Id: I0ef5275399cc423785dfbb30b00ee5148f18906e
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
f1b4c1eaec
gnu: r-arraymvout: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-arraymvout): Update to 1.60.0.

Change-Id: I42b04c02fd24de6898c6be7c18abeeb534737860
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
637217271f
gnu: r-arrayqualitymetrics: Update to 3.58.0. 
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): Update to 3.58.0.

Change-Id: I5ee044a089e154f13250890ef09f06c481598296
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
e79d0a54b5
gnu: r-arrayexpress: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.62.0.

Change-Id: I4d96c4ea89cd51426b0405d26818062751c43d71
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
4b6dfa6785
gnu: r-antiprofiles: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.42.0.

Change-Id: Iee706af570ae789b897f4cfb0a53a474f8615d12
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
79d50ddc44
gnu: r-annmap: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.44.0.

Change-Id: Id960993131170a85231f5b21b354d67b5466ed99
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
f625fab931
gnu: r-aneufinder: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.30.0.

Change-Id: Ib57882838b947c014b2fad4c8c829d91c7aa6a17
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
d79c200c1e
gnu: r-altcdfenvs: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.64.0.

Change-Id: I10775d097dfce34d8b3d2846971a4318368a871f
 2023-11-03 22:49:12 +01:00
Ricardo Wurmus
00dabe4d4f
gnu: r-alpsnmr: Update to 4.4.0. 
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.4.0.

Change-Id: If005837c237e26e32dda5c69a4bfdc9c20d7a0b1
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
5441a7cd9e
gnu: r-alphabeta: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.16.0.

Change-Id: I6abd11e9a22d73737975c660e565944aead7e14b
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
dc6a5a7045
gnu: r-alevinqc: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.18.0.

Change-Id: I96c53e6ac99d375da3a87cdc3ffad888f82bbb80
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
99a2acb5ab
gnu: r-aldex2: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.34.0.
[propagated-inputs]: Add r-directlabels, r-lattice, and r-latticeextra.

Change-Id: Ibd4295392b188034231f54d129af02318510932e
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
e2c41d2c65
gnu: r-anvil: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.14.0.

Change-Id: I154aa331580809b550f33a13cfcebecbcc165820
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4226d5138b
gnu: r-annotationhubdata: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-annotationhubdata): Update to 1.32.0.

Change-Id: Ic55ce4dbad0dd504760a40ef1ac4386318b262cd
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
25da6c744e
gnu: r-ancombc: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.4.0.

Change-Id: Idccde9e571c9ee7b0014bbe4f7328e5b37d764d9
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4771d5687c
gnu: r-anaquin: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.26.0.

Change-Id: I74a39d84856646bcbe0bbc9006c92095145017be
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
578489abe5
gnu: r-amaretto: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.18.0.

Change-Id: I007bd666a0344d206b418d0c45a816518c5dc65c
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
84e9f46720
gnu: r-amplican: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.24.0.

Change-Id: Ifc0a8d5d2a98a4025ba85759bce75a452275f065
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6f7723c3ce
gnu: r-amountain: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-amountain): Update to 1.28.0.

Change-Id: If5cdf59afc38a70335b682b0687b63f33db77a63
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4658cffbfd
gnu: r-airpart: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-airpart): Update to 1.10.0.

Change-Id: Iafee8663fb558b5d73f662a4ea1fb0a1999e109e
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
77d2e3167d
gnu: r-aims: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-aims): Update to 1.34.0.

Change-Id: I494a799b261fedc20204837edbd9017e540de81f
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
ac4e8f6cfd
gnu: r-adductomicsr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.18.0.

Change-Id: I4149f8e884c6e8486c5006103c5dd2da82a070e1
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
ecd66e4010
gnu: r-agilp: Update to 3.34.0. 
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.34.0.

Change-Id: Iae3bbb41a891da0da550ad66ce686fe53fc35be7
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
e628902ae8
gnu: r-aggregatebiovar: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.12.0.

Change-Id: I4fc26155d43bf89bc5c937d59bae3960d79f1429
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
a8212a42d9
gnu: r-agdex: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.50.0.

Change-Id: I2e9bc52fc339ce7300f13485a16f7e674ed7cb73
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
e3acce66d9
gnu: r-affyrnadegradation: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.48.0.

Change-Id: I2f12a2ada8aa83851a25cd16884c2c72e2ab3f02
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
97b1261e63
gnu: r-affyplm: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.78.0.

Change-Id: I96fe37a22d07abc00125df0a229cf7d2d0d136c7
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
14d87c1819
gnu: r-affylmgui: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-affylmgui): Update to 1.76.0.

Change-Id: I169ee4e2a1462140fe2a203ef4a934fcf386a566
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
8ea9b315fd
gnu: r-affyilm: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-affyilm): Update to 1.54.0.

Change-Id: I1b5989c62da7ce108d3e8ec344fd47a7b33f2856
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
4d0c23545b
gnu: r-affixcan: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.20.0.

Change-Id: Ica782aa7cb2603374425e2abc921ade43592aa02
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
c02bc41c68
gnu: r-adsplit: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.72.0.

Change-Id: I2851c235df8c18ae50b931736d65f02aa4403d39
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
2f0f6284d1
gnu: r-adimpute: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.12.0.

Change-Id: I46dae4da51b0a47b8cdffdcd919828415b32d131
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
fc9baf4ad2
gnu: r-adamgui: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.18.0.

Change-Id: Iabe992f09b65994038340e564de3be62ffdae5e3
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
2662a6af48
gnu: r-adam: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-adam): Update to 1.18.0.

Change-Id: I33e560dba8bade0b474b8911c82f71bd768e37a5
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
de5c088e06
gnu: r-adacgh2: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.42.0.

Change-Id: I3a08c5e0c0651c3cb35329de5ce97f660e48ae43
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
7e7d075194
gnu: r-absseq: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.56.0.

Change-Id: I417b2bc58c196fce30a389ae3b999306a0b83893
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
d08d58d828
gnu: r-abarray: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.70.0.

Change-Id: Ibdbf0deb2efad33dffee619c4f8a80f90c815d37
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6ea450f390
gnu: r-debcam: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.20.0.
[arguments]: Remove old comment and enable tests.
[inputs]: Replace icedtea with openjdk11.

Change-Id: Id8afa7e53d69fa7767901249cab58fe5555d0e48
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
bcf0ecd1ec
gnu: Add r-hpo-db. 
* gnu/packages/bioconductor.scm (r-hpo-db): New variable.

Change-Id: I4de4bde150f5ff5634e83a6e2e715cddd30db9b2
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
6304d3cce6
gnu: Add r-mpo-db. 
* gnu/packages/bioconductor.scm (r-mpo-db): New variable.

Change-Id: I88f21ac585d10f2763656b458f015b95a8a8bcfe
 2023-11-03 22:49:11 +01:00
Ricardo Wurmus
48bf30e3b1
gnu: Add r-fancova. 
* gnu/packages/cran.scm (r-fancova): New variable.

Change-Id: I9bfef352be86c08707edfee0bfb171094114d158
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
75ce5b0466
gnu: Add r-collapse. 
* gnu/packages/cran.scm (r-collapse): New variable.

Change-Id: Ib6690a85987e14930057ed960fdd229706b0c35d
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
4f85beac2d
gnu: Add r-msexperiment. 
* gnu/packages/bioconductor.scm (r-msexperiment): New variable.

Change-Id: I707addc076f36bab7f6e96953f5fbd614580825e
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
bbe7ea0d27
gnu: Add r-sparsearray. 
* gnu/packages/bioconductor.scm (r-sparsearray): New variable.

Change-Id: Ibc5b5a518206d492dd5b912294da3967881b5ccd
 2023-11-03 22:49:10 +01:00
Ricardo Wurmus
f80de2f03f
gnu: Add r-metabocoreutils. 
* gnu/packages/bioconductor.scm (r-metabocoreutils): New variable.

Change-Id: I58880565005e05a8a87c97e4611cdba8489515ab
 2023-11-03 22:49:10 +01:00
Tobias Geerinckx-Rice
2059b9fbe0
system: vm: Include the cirrus driver in the initrd. 
This is Ludo's suggestion at <https://issues.guix.gnu.org/36069#26>,
with an added guard against duplicates and a tweaked comment.

* gnu/system/vm.scm (virtualized-operating-system): Add "cirrus" to the
list of INITRD-MODULES.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Change-Id: I1a86286586eee0b8c39706544778c7911a86da33
 2023-10-29 02:00:00 +02:00
Afkhami, Navid
c9361460de
gnu: Add r-miamiplot. 
* gnu/packages/bioinformatics.scm (r-miamiplot): New variable.

Change-Id: I41a3a951c6f1835800301e4c168eeeb0dd299f06
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-11-03 14:10:13 +01:00
Skylar Chan
6ae8fd7aa7
gnu: cmark-gfm: Update to 0.29.0.gfm.13. 
* gnu/packages/markup.scm (cmark-gfm): Update to 0.29.0.gfm.13.
[arguments]: Use G-expressions.

Change-Id: Id8f856cfa8020bc8028d9bf3041a7c651b8b0102
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:14:06 +00:00
Timotej Lazar
021b222cda
gnu: mupdf: Update to 1.23.4. 
* gnu/packages/pdf.scm (mupdf): Update to 1.23.4.
[source]: Switch from gz to lz tarball.

Change-Id: Ie4d20c95e509960390dce3da77315fa2bf2d688f
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:14:06 +00:00
Timotej Lazar
c9a7cbf0b7
gnu: syncthing: Update to 1.25.0. 
* gnu/packages/syncthing.scm (syncthing): Update to 1.25.0.

Change-Id: I39ebd12e96fb09386cf51bd42cd5241f3820c16c
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:14:06 +00:00
Artyom V. Poptsov
ada2152893
gnu: go-github-com-hjson-hjson-go: Update to 4.3.1. 
* gnu/packages/golang.scm (go-github-com-hjson-hjson-go): Update to 4.3.1.

Change-Id: Iee2aef614686cbf79f388e2dd9435745d5502e2a
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:14:06 +00:00
Benjamin
66ff9c82a3
gnu: neovim: Update to 0.9.4. 
* gnu/packages/vim.scm (neovim): Update to 0.9.4.

Change-Id: I7246390c69875cbc1d7442afe38abd31ce85616b
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:01:29 +00:00
Julien Lepiller
9024524de1
gnu: guile-netlink: Update to 1.2.1. 
* gnu/packages/guile-xyz.scm (guile-netlink): Update to 1.2.1.

Change-Id: I3018cf7e0b6cd460bf27b8bbe1b031cf0dafe547
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 10:00:41 +00:00
Jaeme Sifat
809f461ec1
gnu: foot: Update to 1.16.2. 
* gnu/packages/terminals.scm (foot): Update to 1.16.2.
[arguments]: Use gexps.

Change-Id: I0615f6251a918a572369c05b126853f79e9fca4c
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:59:41 +00:00
Kaelyn Takata
ada7e0d042
gnu: wine-minimal: Update to 8.18. 
* gnu/packages/wine.scm (wine-minimal): Update to 8.18.
[properties]: Set upstream-name.

Change-Id: I018c320a990bf101d193095b68c44312ce9653a4
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:56:01 +00:00
Simon Tournier
4471cfd099
gnu: emacs-ox-rss: Update upstream URL. 
* gnu/packages/emacs-xyz.scm (emacs-ox-rss)[source]: Update upstream URL.

Change-Id: I66f0aa2cf5ee08705a89d0683e638e3fa1e1fb12
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Timotej Lazar
5378149acc
gnu: msmtp: Update to 1.8.25. 
* gnu/packages/mail.scm (msmtp): Update to 1.8.25.

Change-Id: If6a03b52734fa09dc6e8ffa5dd893f7d80b86aac
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Timotej Lazar
93b8d2e730
gnu: wlr-randr: Update to 0.3.1. 
* gnu/packages/wm.scm (wlr-randr): Update to 0.3.1.

Change-Id: I1b0d9ae20c9c4a249b3679431101edfa61e39d44
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Cayetano Santos
a4ec0c6ca0
gnu: emacs-mastodon: Update to 1.0.13. 
* gnu/packages/emacs-xyz.scm (emacs-mastodon): Update to 1.0.13.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Timotej Lazar
399cd64bc9
gnu: asciinema: Update to 2.4.0. 
* gnu/packages/terminals.scm (asciinema): Update to 2.4.0.

Change-Id: I3e0fc7cc16aaebdf8346bb715f07021a5d568163
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Felix Gruber
1853fd9c2f
gnu: strawberry: Update to 1.0.21. 
* gnu/packages/music.scm (strawberry): Update to 1.0.21.
[inputs]: Add libebur128.

Change-Id: I2f0094ab1f87301cbf05c13ca5742bb03703b0b4
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
kiasoc5
e20ef7d2d1
gnu: dragonfly-reverb: Update to 3.2.10. 
* gnu/packages/music.scm (dragonfly-reverb): Update to 3.2.10.

Change-Id: I4b0dc4e7aeae381467690305b9551e53341ef8b7
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-11-03 09:46:02 +00:00
Afkhami, Navid
28ebbe2be8
gnu: Add r-matrixtests. 
* gnu/packages/cran.scm (r-matrixtests): New variable.

Change-Id: I62f7bd760fc8603425906c304ef4293da1c0cf61
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-11-02 18:34:09 +01:00
Afkhami, Navid
64dbce8381
gnu: Add r-nestedcv. 
* gnu/packages/cran.scm (r-nestedcv): New variable.

Change-Id: Id998b4192565c220f8d238963ef61217aed12bd3
 2023-11-02 18:34:09 +01:00
Jelle Licht
f5346094f0
gnu: emacs-cider: Include enrich-classpath wrapper scripts. 
* gnu/packages/emacs-xyz.scm (emacs-cider)[arguments]<#:include>: Add
"^lein\\.sh$" and "^clojure\\.sh$" to the list of regexes for installed files.

Change-Id: I02507d3cd012dbe827751a21870e4bc1f13d93b5
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-02 10:01:22 +04:00
Jelle Licht
0f2ec2117b
gnu: emacs-cider: Update to 1.9.0. 
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.9.0.

Change-Id: I25c511e93bdd7ec19a74ef10d0b5527a9e0b922d
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-02 10:01:21 +04:00
Jelle Licht
7c2d36d014
gnu: emacs-clj-refactor: Update to 3.10.0. 
* gnu/packages/emacs-xyz.scm (emacs-clj-refactor): Update to 3.10.0.

Change-Id: Idef5f44e2e3a8ed149d46ba2307184ffee21de4b
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-02 10:01:20 +04:00
Jelle Licht
1ebc1651a6
gnu: emacs-clojure-mode: Update to 5.18.0. 
* gnu/packages/emacs-xyz.scm (emacs-clojure-mode): Update to 5.18.0.

Change-Id: I84cadfe0af5e1635abd02593e4f5f02b53645b39
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-02 10:01:19 +04:00
Jelle Licht
a5c7ceda0a
gnu: emacs-org-contrib: Remove dependency on emacs-cider. 
Since version 0.4 the ob-clojure-literate.el file with a dependency on cider
was removed from org-contrib.

* gnu/packages/emacs-xyz.scm (emacs-org-contrib)[native-inputs]: Remove
emacs-cider.

Change-Id: I838e965a819d9793424b6310ae324460b260afcc
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-11-02 10:01:18 +04:00
Ricardo Wurmus
0647f308b4
gnu: r-rjava: Use OpenJDK 11. 
See https://github.com/s-u/rJava/issues/307.

* gnu/packages/cran.scm (r-rjava)[arguments]: Use search-input-file.
[inputs]: Replace icedtea-8 with openjdk11.

Change-Id: I9e67210f1bfd585fb53845dad55a56a639a5d806
 2023-11-01 19:33:38 +01:00
Simon Tournier
3991d9e4d9
Revert "gnu: lvm2: Remove systemd rule." 
This reverts commit c0895371c5, which does not
correctly fix the issue, as reported by Josselin Poiret <dev@jpoiret.xyz> in
<https://issues.guix.gnu.org/issue/66586#6>.
 2023-10-31 22:15:33 +01:00
Afkhami, Navid
b963bf6b1d
gnu: python-baltica: Add missing R inputs. 
* gnu/packages/bioinformatics.scm (python-baltica)[propagated-inputs]: Add
r-biocmanager, r-dplyr, r-genomicranges, r-here, r-openxlsx, r-optparse,
r-readr, r-rsamtools, r-stringr, r-tidyr, r-upsetr, and r-yaml.
[description]: Add an extra space after a period.

Change-Id: I8c1bb556048b406b95e081155a46da17a6be5676
 2023-10-31 22:03:24 +01:00
Ricardo Wurmus
4254269ad5
gnu: r-logspline: Update to 2.1.21. 
* gnu/packages/statistics.scm (r-logspline): Update to 2.1.21.

Change-Id: Ib4ec6124282851bcc52eb87f7e30027e801f0531
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
0858b9c472
gnu: r-withr: Update to 2.5.2. 
* gnu/packages/statistics.scm (r-withr): Update to 2.5.2.

Change-Id: Ie4265bc4a6d9c54e3f64ab12ae0d14c716b4e03f
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
90a8594c7b
gnu: r-checkmate: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-checkmate): Update to 2.3.0.

Change-Id: I0599e3a4e174cc311c37d7c334087eda15deafc1
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
76a12b07d1
gnu: r-dbplyr: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.4.0.

Change-Id: I8cf5c1b47b47a41b606e76d0b5e14425946f0903
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
e2d4dd5e1c
gnu: r-knitr: Update to 1.45. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.45.

Change-Id: I1317366a0041f29b284e24d056734498f9d35cd7
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
4f4ab05dc4
gnu: r-strex: Update to 1.6.1. 
* gnu/packages/cran.scm (r-strex): Update to 1.6.1.

Change-Id: Id37ef19901a3548128816e2677148405b5845297
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
a14e534dbd
gnu: r-seuratobject: Update to 5.0.0. 
* gnu/packages/cran.scm (r-seuratobject): Update to 5.0.0.
[propagated-inputs]: Add r-generics, r-lifecycle, and r-spam.

Change-Id: I8486d42c1f9d3e5f4b9fc091a4d4aab7b1c803b6
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
75db05d7db
gnu: r-rfast: Update to 2.0.9. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.9.
[propagated-inputs]: Add r-rcppparallel.

Change-Id: I551a2b1745b937454b5aad99f4620839f9a89902
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
d0013cb066
gnu: r-spatstat: Update to 3.0-7. 
* gnu/packages/cran.scm (r-spatstat): Update to 3.0-7.

Change-Id: I8c54279b92acb7532b1050613a60ba2e96c115eb
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus
12167e57e8
gnu: r-spatstat-linnet: Update to 3.1-3. 
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.1-3.

Change-Id: I7f1dadd2e8fecf03cbde3c56de3a3384ba8cf24d
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
8638f87510
gnu: r-posterior: Update to 1.5.0. 
* gnu/packages/cran.scm (r-posterior): Update to 1.5.0.

Change-Id: I3fa7adca749efcbe0d8b6ab0f707e70a1e895d2d
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
bd15e8babf
gnu: r-adagio: Update to 0.9.2. 
* gnu/packages/cran.scm (r-adagio): Update to 0.9.2.

Change-Id: I2131b973194fcf710fed1ac4c425717278269308
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
199f6a9967
gnu: r-rintrojs: Update to 0.3.3. 
* gnu/packages/cran.scm (r-rintrojs): Update to 0.3.3.

Change-Id: I184740e9bd1ed8d087c2985d08b12f4fe31d72b7
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
8aafa8bd45
gnu: r-sampling: Update to 2.10. 
* gnu/packages/cran.scm (r-sampling): Update to 2.10.

Change-Id: I7a3407c77fb71a8a4355415beeee09edc2a8908c
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
8ab1ea6850
gnu: r-polspline: Update to 1.1.24. 
* gnu/packages/cran.scm (r-polspline): Update to 1.1.24.

Change-Id: I323fc3b50c1d215d749cd814a684463810e4bfc4
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
d034d0a1a0
gnu: r-grimport2: Update to 0.3-1. 
* gnu/packages/cran.scm (r-grimport2): Update to 0.3-1.

Change-Id: I6b7de08f4d24a3398e8b788fbe726792ac38a59a
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
2fec2b0a7a
gnu: r-gridpattern: Update to 1.1.1. 
* gnu/packages/cran.scm (r-gridpattern): Update to 1.1.1.

Change-Id: I63bc1df4fc6f8f5e9931a6a82db68df0e933a1cb
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
05e2f170f7
gnu: r-performance: Update to 0.10.8. 
* gnu/packages/cran.scm (r-performance): Update to 0.10.8.

Change-Id: Ic0c7a1f1402ae5a63bf433fd2f874e24eab5a216
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
d7244ece08
gnu: r-wrs2: Update to 1.1-5. 
* gnu/packages/cran.scm (r-wrs2): Update to 1.1-5.
[propagated-inputs]: Remove r-mc2d.

Change-Id: I0346e018b401143b4f9cf65845cf4d3b210ed54b
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
62ad4b2566
gnu: r-rbibutils: Update to 2.2.16. 
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.16.

Change-Id: I188dddbb7fa03f43574e50d43f741c5398e7c331
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
d941cec521
gnu: r-lambertw: Update to 0.6.9. 
* gnu/packages/cran.scm (r-lambertw): Update to 0.6.9.

Change-Id: Ia36a96ddd78585768b88ab662d5c5ba31aa40744
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
e11a490138
gnu: r-mbess: Update to 4.9.3. 
* gnu/packages/cran.scm (r-mbess): Update to 4.9.3.

Change-Id: I8ada8e1a56b7497145409de82865d5d9d83da6e3
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
8e44a14be6
gnu: r-poorman: Update to 0.2.7. 
* gnu/packages/cran.scm (r-poorman): Update to 0.2.7.

Change-Id: I9c23bd2bbba0eb6f6b2b6b6ac1cc11524b5c6980
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
03c1f71501
gnu: r-consort: Update to 1.2.1. 
* gnu/packages/cran.scm (r-consort): Update to 1.2.1.

Change-Id: I28d1749044a38f9a9144eeb5675d6607bf973c53
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
221b9422fc
gnu: r-abn: Update to 3.0.2. 
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.2.

Change-Id: Icf3de104b61e79b9a7c9fbfecb0e071d6e46ef9d
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
a9ee95aec1
gnu: r-htmltable: Update to 2.4.2. 
* gnu/packages/cran.scm (r-htmltable): Update to 2.4.2.
[arguments]: Replace minified JavaScript.
[native-inputs]: Add esbuild and js-jquery.

Change-Id: Iacc17957c2a773ca651d3a9e980a3e4281874829
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus
dfd3934b6b
gnu: r-rsqlite: Update to 2.3.2. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.2.

Change-Id: I97532cd5834e0aad84d7072f7f93bae612ad93bf
 2023-10-31 21:57:58 +01:00
Efraim Flashner
e82b700228
gnu: b43-tools: Use make-flags. 
* gnu/packages/firmware.scm (b43-tools)[arguments]: Add make-flags.
Use make-flags in custom 'build and 'install phases.  Remove trailing #t
from phases.

Change-Id: I8576351ecd571d191598943a2d143ab3e3e9da09
 2023-10-31 22:32:53 +02:00
Maxim Cournoyer
d96a9c7473
gnu: python-radio-beam: Update to 0.3.6. 
* gnu/packages/astronomy.scm (python-radio-beam): Update to 0.3.6.
[native-inputs]: Add python-setuptools-scm.

Change-Id: I3be87a22b701119699d37104f8df4f3fab44d0c8
 2023-10-31 13:15:25 -04:00
Maxim Cournoyer
6318e7a851
gnu: python-spectral-cube: Update to 0.6.3. 
* gnu/packages/astronomy.scm (python-spectral-cube): Update to 0.6.3.
[native-inputs]: Add python-setuptools-scm.

Change-Id: I8b701081d2c8ea2fd8f25ca845e8e26760fdc094
 2023-10-31 13:15:25 -04:00
Sharlatan Hellseher
5e5547d1b3
gnu: Add python-spectral-cube. 
* gnu/packages/astronomy.scm (python-spectral-cube): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-10-31 13:15:25 -04:00
Sharlatan Hellseher
c1e3ad850d
gnu: Add python-aplpy. 
* gnu/packages/astronomy.scm (python-aplpy): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-10-31 13:15:24 -04:00
Sharlatan Hellseher
4b1dce7185
gnu: Add python-pyregion. 
* gnu/packages/astronomy.scm (python-pyregion): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-10-31 13:15:24 -04:00
Sharlatan Hellseher
ea2e0eb36b
gnu: Add python-pyavm. 
* gnu/packages/astronomy.scm (python-pyavm): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-10-31 13:15:24 -04:00
Sharlatan Hellseher
c82c6807e8
gnu: Add python-radio-beam. 
* gnu/packages/astronomy.scm (python-radio-beam): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-10-31 13:15:24 -04:00
Tobias Geerinckx-Rice
5e7f27d6ca
gnu: opensmtpd: Update to 7.4.0p0 (bis). 
This time fixing a segfault reported & debugged entirely by graywolf.
See: <https://github.com/OpenSMTPD/OpenSMTPD/issues/1233>

So, what went wrong here?  Mostly me being entirely convinced, to the
point of not even looking, that we have no opensmtpd system test.  We
do.  Instead, I tested the update on my own mail server, which for
entirely unhysterical raisins happens to link OpenSMTPd against OpenSSL
and so just happens to sidestep this bug.  Aiya.

* gnu/packages/mail.scm (opensmtpd): Update to 7.4.0p0.
[native-inputs]: Add pkg-config.
[inputs]: Add libbsd.
[arguments]: Add "--with-libbsd" to #:configure-flags.

Co-authored-by: graywolf in #guix
Change-Id: I5536b828eecd16f041ed9381b16bd7aa54158155
 2023-10-29 02:00:00 +02:00
Mădălin Ionel Patrașcu
a0a377fdd6
gnu: Add r-radiogx. 
* gnu/packages/bioconductor.scm (r-radiogx): New variable.

Change-Id: I8fd06a18bd68f9a3baa2cc129d62aef06528bc97
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
7170720e48
gnu: Add r-coregx. 
* gnu/packages/bioconductor.scm (r-coregx): New variable.

Change-Id: Ib54ba3c7bebdcc90748d4e4b0b2ce63b7f0fc1b8
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
e8cd556a7c
gnu: Add r-piano. 
* gnu/packages/bioconductor.scm (r-piano): New variable.

Change-Id: I1bc2387563510c47614748423a3b510adc0486aa
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
a8680f59e3
gnu: Add r-bench. 
* gnu/packages/cran.scm (r-bench): New variable.

Change-Id: I9948ff12729b08dd4016df272777651a6b6de2e0
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
4903e70993
gnu: Add r-profmem. 
* gnu/packages/cran.scm (r-profmem): New variable.

Change-Id: If99cf8e963601e9f0a664f12ef263a064b59b0d6
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
b538ce0c60
gnu: Add r-relations. 
* gnu/packages/cran.scm (r-relations): New variable.

Change-Id: I4bf67353aa7f7221592d274d61c74b83191a6281
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
91ba3ea8eb
gnu: Add r-magicaxis. 
* gnu/packages/cran.scm (r-magicaxis): New variable.

Change-Id: I9843dcf90cd6d85799fab688d6dccfcfacfad672
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
48b2478067
gnu: Add r-celestial. 
* gnu/packages/cran.scm (r-celestial): New variable.

Change-Id: I9ab9c6b6c79f2fb12d7391a75e7214bbeba675fc
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
f123b38090
gnu: Add r-nistunits. 
* gnu/packages/cran.scm (r-nistunits): New variable.

Change-Id: I66328b54045a3125e5f3033605be88e3a1b2646a
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
192514e869
gnu: Add r-r4rna. 
* gnu/packages/bioconductor.scm (r-r4rna): New variable.

Change-Id: I1bde2a17b0ba4a97fa54161744f048dbfaf2217a
 2023-10-31 13:58:08 +01:00
Mădălin Ionel Patrașcu
d24c1078d2
gnu: Add r-r3cseq. 
* gnu/packages/bioconductor.scm (r-r3cseq): New variable.

Change-Id: Ib62db1415ef3988ccef88ad600192246964b4d84
 2023-10-31 13:58:08 +01:00
Yann Dupont
c0895371c5
gnu: lvm2: Remove systemd rule. 
Fixes <https://issues.guix.gnu.org/65177>.
Reported by Adrien 'neox' Bourmault <neox@gnu.org>.

* gnu/packages/patches/lvm2-no-systemd.patch: New file.
* gnu/packages/linux.scm (lvm2)[source]: Apply patch.
* gnu/local.mk: Register new patch.

Signed-off-by: Simon Tournier <zimon.toutoune@gmail.com>
Change-Id: I6b9d583f5914cc127c067829b5891827c04608cb
 2023-10-31 09:56:13 +01:00
Ricardo Wurmus
5cbb0b15cc
gnu: coturn: Update to 4.6.2. 
* gnu/packages/telephony.scm (coturn): Update to 4.6.2.

Change-Id: If0b46af1a034a72a49c00b1e2a871ea636d203f2
 2023-10-31 09:47:54 +01:00
Tobias Geerinckx-Rice
b71c7c472a
Revert "gnu: opensmtpd: Update to 7.4.0p0." 
This reverts commit b6e8d587c4
pending investigation of a segfault reported by graywolf in #guix.
 2023-10-29 02:00:00 +02:00
Tobias Geerinckx-Rice
e49fdc231b
Revert "gnu: linux-libre@6: Enable Coreboot framebuffer support (again)." 
This reverts commit 6d7e181ba1.
 2023-10-29 02:00:00 +02:00
Ricardo Wurmus
7e9783b2ab
gnu: Add python-ml-collections. 
* gnu/packages/machine-learning.scm (python-ml-collections): New variable.

Change-Id: I9299fe4221f13d979266fccc7b9cdd96a8d6e678
 2023-10-30 13:00:56 +01:00
Ricardo Wurmus
f330920a14
gnu: python-dm-tree: Use static abseil-cpp. 
* gnu/packages/python-xyz.scm (python-dm-tree)[inputs]: Replace abseil-cpp
with static-abseil-cpp.
[arguments]: Reference static libraries.

Change-Id: I11b58ad907a3e59b98c28d6c2f6fb7bcc15be742
 2023-10-30 12:25:47 +01:00
Ricardo Wurmus
6797aac408
gnu: Add static-abseil-cpp. 
* gnu/packages/cpp.scm (static-abseil-cpp): New variable.
(make-static-abseil-cpp): New procedure.

Change-Id: I0b0b17b31461baf1189d7c818a82c99baad253c1
 2023-10-30 12:25:47 +01:00
Leo Famulari
5746d043a6
gnu: transmission: Update to 4.0.4. 
* gnu/packages/bittorrent.scm (transmission): Update to 4.0.4.
[synopsis]: Remove "marketing phrases".

Change-Id: Ibecdf14198ba926eea66ff5ba29ec05fbd27fde2
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-30 11:17:43 +00:00
Liliana Marie Prikler
4d52378daa
gnu: cockatrice: Update to 2.9.0. 
* gnu/packages/games.scm (cockatrice): Update to 2.9.0.

Change-Id: Ia963a45ff49af40295329fd99db0dd039e314b77
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-30 11:17:43 +00:00
Ahmad Draidi
500eee9c84
gnu: labwc: Update to 0.6.5. 
* gnu/packages/wm.scm (labwc): Update to 0.6.5.
[inputs]: Add librsvg.

Change-Id: I2812e78aa5ee6e2a19ed5e8756aac0e0f83610db
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-30 11:17:43 +00:00
Jack Hill
85451b38dd
gnu: ansible: Update to 8.5.0. 
* gnu/packages/admin.scm (ansible): Update to 8.5.0.

Change-Id: I38ac84a0945f3ba10e13246cf8ae95c3795b52b3
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-30 11:17:43 +00:00
Jack Hill
4af23bc03c
gnu: Remove python-resolvelib@0.5. 
* gnu/packages/python-xyz.scm (python-resolvelib-0.5): Delete
variable. This was only used by ansible-core which can now use the
newer version.

Change-Id: Ic40e21561807ed5faae466e13193892e4f9aa6ae
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-30 11:17:42 +00:00
Jack Hill
a85cbaa437
gnu: ansible-core: Update to 2.15.5 and fix tests. 
* gnu/packages/admin.scm (ansible-core): Update to 2.15.5.
[#:phases]<check>: Enable tests that now pass and choose
the right ansible-test to invoke.
[propagated-inputs]: Replace python-resolvelib-0.5 with python-resolvelib.

Change-Id: Ibda3222a16fefb1484affdb62e38a3a07ce61986
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-30 11:17:42 +00:00
Sebastian Gibb
549d7ce3b3
gnu: Add r-consort. 
* gnu/packages/consort.scm (r-consort): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
Change-Id: I37bae26b3271f2c8e4d73bb72e11bc475168b0f7
 2023-10-30 11:17:42 +00:00
gemmaro
789ef6837f
gnu: Add online-judge-tools. 
* gnu/packages/python-xyz.scm (online-judge-tools): New variable.
* gnu/packages/patches/online-judge-tools.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file.

Signed-off-by: Christopher Baines <mail@cbaines.net>
Change-Id: I78315db15ca8205dff607e98388c404ede64fb60
 2023-10-30 11:17:42 +00:00
gemmaro
9524ff9f3a
gnu: Add python-online-judge-api-client. 
* gnu/packages/python-xyz.scm (python-online-judge-api-client): New variable.
* gnu/packages/patches/python-online-judge-api-client-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file.

Signed-off-by: Christopher Baines <mail@cbaines.net>
Change-Id: If407a070a52e66c723d042217a5ff6e1589efce1
 2023-10-30 11:17:42 +00:00
Giacomo Leidi
db5c83e83b
gnu: Add aerich. 
* gnu/packages/databases.scm (aerich): New variable.

Change-Id: I322d619dc80c943d50e28a96ba74d276784ab8da
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-30 11:17:42 +00:00
Giacomo Leidi
6127283151
gnu: Add python-ddlparse. 
* gnu/packages/python-xyz.scm (python-ddlparse): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-30 11:17:42 +00:00
Vinicius Monego
a0eb6652b3
gnu: Add ffmpeg-normalize. 
* gnu/packages/video.scm (ffmpeg-normalize): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-30 11:17:42 +00:00
Vinicius Monego
0fcbca2721
gnu: Add ffmpeg-progress-yield. 
* gnu/packages/video.scm (ffmpeg-progress-yield): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-10-30 11:17:39 +00:00
Ricardo Wurmus
5d79012073
gnu: Add r-voltron. 
* gnu/packages/bioinformatics.scm (r-voltron): New variable.

Change-Id: I5f70cf613bf2c26c4ca119483c9ad3b0beba6502
 2023-10-30 10:48:16 +01:00
Janneke Nieuwenhuizen
db6b00795a
gnu: dezyne: Update to 2.17.7. 
* gnu/packages/dezyne.scm (dezyne): Update to 2.17.7.

Change-Id: I278e4e17f49b15600689cebda04298de6bbc8a65
 2023-10-30 10:14:37 +01:00
Philip McGrath
642769707c
gnu: nghttp2: Replace with 1.57.0. 
This release mitigates CVE-2023-44487.

* gnu/packages/web.scm (nghttp2-1.57): New variable.
(nghttp2)[replacement]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-30 00:29:53 +01:00
Skyler Ferris
593a2e6354
gnu: file-systems: Add xenfs to %pseudo-file-system-types. 
* gnu/system/file-systems.scm (%pseudo-file-system-types): Add xenfs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-10-30 00:20:42 +01:00
Ludovic Courtès
e7f7bb0af5
gnu: cuirass: Update to 1.2.0. 
* gnu/packages/ci.scm (cuirass): Update to 1.2.0.

Change-Id: Iada634a9d66ea3bf1035084970cf560ff5303c28
 2023-10-30 00:19:07 +01:00
Clément Lassieur
26565f1bc8
gnu: passff-host: Fix builder issues. 
* gnu/packages/browser-extensions.scm (passff-host)[arguments]: Use
`patch-shebang` instead of wrong `substitute*`, add newline after
substitution.

Change-Id: I6cd1d681e9e84bdeb24943dfe1d85d996f1a262b
 2023-10-29 15:46:20 +01:00
Simon Tournier
1dae566182
gnu: emacs-julia-mode: Update to 0.4-0.7a8c868. 
* gnu/packages/emacs-xyz.scm (emacs-julia-mode): Update to 0.4-0.7a8c868.
[arguments]: Convert to list of G-Expressions.

Change-Id: I3d06dbe824ce989400d801118e8bca496ae4b3e2
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 13:15:44 +01:00
Simon Tournier
800ed532d2
gnu: emacs-julia-mode: Exclude tests that fail with Emacs 29. 
* gnu/packages/emacs-xyz.scm (emacs-julia-mode)[#:phases]: Add ‘fix-tests’.

Change-Id: I1da1077a7e7e077392458243b2d3cd44592ebd45
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-10-29 13:15:44 +01:00
John Kehayias
2b5c6e1a41
gnu: godot: Update to 4.1.2. 
* gnu/packages/game-development.scm (godot): Update to 4.1.2.

Change-Id: I358305245305c2cf31e40ce1d33f28c97c224b52
 2023-10-28 23:09:19 -04:00
宋文武
c03a44f755
gnu: retroarch: Remove input labels. 
* gnu/packages/emulators.scm (retroarch)[inputs]: Remove labels.

Change-Id: Ia536f4b529260dc8c0f91618e0fd1e207984942f
 2023-10-29 09:33:34 +08:00
宋文武
f0222fb37e
gnu: retroarch: Use latest ffmpeg. 
* gnu/packages/emulators.scm (retroarch)[inputs]: Replace ffmpeg-4 with ffmpeg.

Change-Id: I8b2772e139fd884caa6b411afdcf1ccb849dbc28
 2023-10-29 09:33:32 +08:00
宋文武
b4b7169839
gnu: retroarch: Use more system libraries. 
* gnu/packages/emulators.scm (retroarch)[inputs]: Add flac, glslang,
mbedtls-apache, openssl, spirv-headers and spirv-tools.
[arguments]: Add configure flags to disable bundled libraries.

Change-Id: I2a833da5e5b28469e4677b3c24608e71949308a7
 2023-10-29 09:33:20 +08:00
宋文武
3e968af472
gnu: retroarch: Update to 1.16.0.3. 
* gnu/packages/emulators.scm (retroarch): Update to 1.16.0.3.

Change-Id: Ied17b92bb416bd7e237ef883793015c96b01d2f8
 2023-10-29 09:32:37 +08:00
Tobias Geerinckx-Rice
b6e8d587c4
gnu: opensmtpd: Update to 7.4.0p0. 
* gnu/packages/mail.scm (opensmtpd): Update to 7.4.0p0.

Change-Id: I5536b828eecd16f041ed9381b16bd7aa54158155
 2023-10-22 02:00:00 +02:00
Jelle Licht
72d9a5d7dd
gnu: linux-libre 6.5: Update deblob scripts version hash. 
* gnu/packages/linux.scm (deblob-scripts-6.5): Update hash.

Change-Id: If692586bac01369c63099cf8311c9a94e70cc106
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2023-10-22 02:00:00 +02:00
Tobias Geerinckx-Rice
7164f2b812
gnu: iotop: Update to 1.25. 
* gnu/packages/linux.scm (iotop): Update to 1.25.

Change-Id: I7ee64c3318f8fd7677c181d32b920dfcf84b1836
 2023-10-22 02:00:00 +02:00
Efraim Flashner
4dfbc53668
gnu: custom-gcc: Set upstream name. 
* gnu/packages/gcc.scm (custom-gcc)[properties]: Add upstream name.

Change-Id: I30326dc7952b11451a86f7f026aa1a97364a89e4
 2023-10-28 22:03:35 +03:00
Efraim Flashner
f093eecbbc
gnu: Add gccgo-13. 
* gnu/packages/crates-io.scm (gccgo-13): New variable.

Change-Id: I4b1ed0657518b9113a5ce89221189b9dd60f4347
 2023-10-28 22:02:32 +03:00
Efraim Flashner
beb8365e37
gnu: gccgo: Add note about provided go version. 
* gnu/packages/gcc.scm (gccgo-10, gccgo-11, gccgo-12): Add notes about
what version of is provided by these packages.

Change-Id: Id483319e606fdebe1820abeb7e129c580bf2c165
 2023-10-28 22:02:32 +03:00
Ricardo Wurmus
46b981d18d
gnu: Add gerbera. 
* gnu/packages/upnp.scm (gerbera): New variable.

Change-Id: I8b63b16fe7587557b08835d3edd58054ebe78559
 2023-10-28 17:38:13 +02:00
Andy Tai
ed4f93356b
gnu: parallel: Update to 20231022. 
* gnu/packages/parallel.scm (parallel): Update to 20231022.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
Change-Id: I1af0cd5d61ebb4118d13dd0e2a56ea6b3d647c17
 2023-10-28 16:33:23 +02:00
Clément Lassieur
0525a39c21
gnu: passff-host: Refactor builder. 
* gnu/packages/browser-extensions.scm (passff-host)[arguments]: Refactor
builder.

Change-Id: I42cb5e6b4808a8b2025d20654c57392f79c01a5c
 2023-10-28 16:16:25 +02:00
Wilko Meyer
c3cf04d05b
gnu: linux-libre 4.14: Update to 4.14.328. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.328.
(linux-libre-4.14-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I7787d2ed4cac1afe2b9e988395c440355ce2edaf
 2023-07-23 22:26:07 -04:00
Wilko Meyer
0b7031f097
gnu: linux-libre 4.19: Update to 4.19.297. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.297.
(linux-libre-4.19-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I85840b2f7984d40ecfd09ea2603f36927cb953f3
 2023-07-23 22:26:06 -04:00
Wilko Meyer
3701fdcc9a
gnu: linux-libre 5.4: Update to 5.4.259. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.259.
(linux-libre-5.4-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: Iddba0dfd309bedda70bb2e0f910354df352dc059
 2023-07-23 22:26:06 -04:00
Wilko Meyer
e672066097
gnu: linux-libre 5.10: Update to 5.10.199. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.199.
(linux-libre-5.10-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I79378d78d5feb2b2b7e60f473c522b04a72b85e9
 2023-07-23 22:26:05 -04:00
Wilko Meyer
b26526ea05
gnu: linux-libre 5.15: Update to 5.15.137. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.137.
(linux-libre-5.15-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: Iec962e677edbab8f0145521905f42a0dc8e9fb56
 2023-07-23 22:26:05 -04:00
Wilko Meyer
26709726a8
gnu: linux-libre 6.1: Update to 6.1.60. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.60.
(linux-libre-6.1-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I026d2956ff6fe82a495e363a6905d7ecba530c89
 2023-07-23 22:26:04 -04:00
Wilko Meyer
55cd6b2e3a
gnu: linux-libre 6.5: Update to 6.5.9. 
* gnu/packages/linux.scm (linux-libre-6.5-version): Update to 6.5.9.
(linux-libre-6.5-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I498f318d4120217a0c002c88acb20e5eacc0f146
 2023-07-23 22:26:00 -04:00
Ludovic Courtès
344e39c928
profiles: Hooks honor the #:system parameter of ‘profile-derivation’. 
Fixes <https://issues.guix.gnu.org/65225>.

* guix/profiles.scm (info-dir-file, package-cache-file)
(info-dir-file, ghc-package-cache-file, ca-certificate-bundle)
(emacs-subdirs, gdk-pixbuf-loaders-cache-file, glib-schemas)
(gtk-icon-themes, gtk-im-modules, linux-module-database)
(xdg-desktop-database, xdg-mime-database, fonts-dir-file)
(manual-database, manual-database/optional): Add optional #:system
parameter and pass it to ‘gexp->derivation’.
(profile-derivation): Pass HOOK a second parameter, SYSTEM.
* gnu/bootloader.scm (efi-bootloader-profile)[efi-bootloader-profile-hook]:
Add optional #:system parameter and pass it to ‘gexp->derivation’.
* guix/channels.scm (package-cache-file): Likewise.
* tests/profiles.scm ("profile-derivation, #:system, and hooks"): New
test.

Reported-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2023-10-28 00:17:24 +02:00
Rostislav Svoboda
2de3004267
home: services: Fix regression in generated ‘on-first-login’ script. 
Fixes <https://issues.guix.gnu.org/66659>.

Fixes a regression introduced in 6b0a321969. The
first attempt in e098ba2f49 to fix this issue didn't work.

* gnu/home/services.scm (compute-on-first-login-script): Add
‘begin *unspecified*’ around #$@gexps.

Change-Id: I14339ad684ffe93e692e507b57dcd221d96210ef
Signed-off-by: Clément Lassieur <clement@lassieur.org>
 2023-10-27 16:51:58 +02:00
Evgeny Pisemsky
2ff8de3657
gnu: Add sdl2-gamecontrollerdb. 
* gnu/packages/sdl.scm (sdl2-gamecontrollerdb): New variable.
 2023-10-27 16:33:33 +02:00
Liliana Marie Prikler
c4eb5c6808
gnu: Add emacs-pddl-mode. 
* gnu/packages/emacs-xyz.scm (emacs-pddl-mode): New variable.
 2023-10-27 16:33:33 +02:00
Liliana Marie Prikler
7f07441b17
gnu: Add popf. 
* gnu/packages/maths.scm (popf): New variable.
 2023-10-27 16:33:32 +02:00
Ricardo Wurmus
8a7860d9d8
gnu: python-dm-tree: Update to 0.1.8. 
* gnu/packages/python-xyz.scm (python-dm-tree): Update to 0.1.8.
[build-system]: Use pyproject-build-system.
[arguments]: Link with absl_strings_internal and use --whole-archive.

Change-Id: I763b01c24082ce1d6a0f4ffd518cfde221b28e72
 2023-10-27 16:13:02 +02:00
Nicolas Graves
eeb7f88934
gnu: Add emacs-treebundel. 
* gnu/packages/emacs-xyz.scm (emacs-treebundel): New variable.

Change-Id: I1b1037b69febd0bab59aae6dd95aeeaa6a5e1e2e
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-10-27 17:28:29 +04:00
Zheng Junjie
fca99c89b8
gnu: Add guile-ts. 
* gnu/packages/guile-xyz.scm (guile-ts): New variable.

Co-authored-by: Andrew Tropin <andrew@trop.in>
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-10-27 16:10:04 +04:00
zamfofex
c11b9133d2
gnu: Add moonfish. 
* gnu/packages/games.scm (moonfish): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Idadb367c60648a1c98601302398dae1373e68919
 2023-10-27 13:32:37 +02:00
Wilko Meyer
b96729e22d
gnu: linux-libre 5.15: Update to 5.15.136. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.136.
(linux-libre-5.15-pristine-source): Update hash.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I17e958435010099ae41713a2a18d6fc5fac57ce7
 2023-07-23 22:26:05 -04:00