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99847 Commits

Author SHA1 Message Date
Efraim Flashner
a39aac3352
gnu: Add python-google-auth-httplib2. 
* gnu/packages/python-web.scm (python-google-auth-httplib2): New
variable.
 2023-03-20 18:27:44 +02:00
Efraim Flashner
6ec585fb3e
gnu: Add python-uritemplate-3. 
* gnu/packages/python-web.scm (python-uritemplate-3): New variable.
 2023-03-20 18:27:43 +02:00
Efraim Flashner
0f4800e93a
gnu: python-httplib2: Update to 0.15.0. 
* gnu/packages/python-web.scm (python-httplib2): Update to 0.15.0.
[source]: Download using git.
[arguments]: Add a phase to adjust the test package version
requirements.
[native-inputs]: Add python-flake8, python-future, python-mock,
python-pytest, python-pytest-cov, python-pytest-forked,
python-pytest-randomly, python-pytest-timeout, python-pytest-xdist,
python-six.
[home-page]: Switch to new upstream homepage.
 2023-03-20 18:27:43 +02:00
Efraim Flashner
9d93c0c789
gnu: zig: Increase max-silent-time. 
* gnu/packages/zig.scm (zig-0.10)[properties]: Set max-silent-time to 3
hours.
 2023-03-20 18:27:40 +02:00
Ricardo Wurmus
5dcbe80da8
gnu: Add transanno. 
* gnu/packages/bioinformatics.scm (transanno): New variable.
 2023-03-20 17:22:33 +01:00
Ricardo Wurmus
6a1638fe97
gnu: Add rust-autocompress-0.2. 
* gnu/packages/crates-io.scm (rust-autocompress-0.2): New variable.
 2023-03-20 17:22:33 +01:00
Ricardo Wurmus
cc2f5cd998
gnu: Add rust-temp-testdir-0.2. 
* gnu/packages/crates-io.scm (rust-temp-testdir-0.2): New variable.
 2023-03-20 17:22:33 +01:00
Ricardo Wurmus
50e63a675b
gnu: Add rust-bio-0.41. 
* gnu/packages/crates-io.scm (rust-bio-0.41): New variable.
 2023-03-20 17:22:33 +01:00
Maxim Cournoyer
45fd01ac5d
gnu: ruby-rugged: Update to 1.6.2-0.6379f23 and enable tests. 
* gnu/packages/ruby.scm (ruby-rugged): Update to 1.6.2-0.6379f23.
[source]: Fetch via git.
[arguments]: Enable tests.  Add #:phases.
[native-inputs]: Add git-minimal/pinned.  Remove ruby-minitest and ruby-pry.
 2023-03-20 11:12:18 -04:00
Maxim Cournoyer
008a2f1803
gnu: python-django-rq: Update to 2.7.0. 
* gnu/packages/django.scm (python-django-rq): Update to 2.7.0.
[arguments]: Replace django-admin.py with django-admin in check phase.
 2023-03-20 08:38:20 -04:00
Maxim Cournoyer
10d5535c78
gnu: python-aioredis: Deprecate by python-redis. 
* gnu/packages/databases.scm (python-aioredis): Mark as deprecated by
python-redis.
 2023-03-20 08:38:19 -04:00
Maxim Cournoyer
c3b110b27a
gnu: python-fakeredis: Update to 2.10.1 and enable tests. 
* gnu/packages/databases.scm (python-fakeredis): Update to 2.10.1.
[source]: Fetch via git.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests.  Add #:phases.
[native-inputs]: New field.
[propagated-inputs]: Remove python-aioredis and python-packaging.
[home-page]: Update URL.
 2023-03-20 08:38:19 -04:00
Maxim Cournoyer
1a902eb21a
gnu: python-redis: Update to 4.5.2 and enable tests. 
* gnu/packages/databases.scm (python-redis): Update to 4.5.2.
[source]: Fetch from git.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests.  Add #:test-flags and #:phases.
[native-inputs]: Add field.
[propagated-inputs]: Add field.
[home-page]: Update URL.
 2023-03-20 08:38:07 -04:00
Maxim Cournoyer
20fa738123
gnu: python-hiredis: Update to 2.2.2 and enable tests. 
* gnu/packages/databases.scm (python-hiredis): Update to 2.2.2.
[source]: Fetch via git and apply patches.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests.  Add #:phases.
[native-inputs]: New field.
[inputs]: Likewise.
* gnu/packages/patches/python-hiredis-fix-header.patch: New file.
* gnu/packages/patches/python-hiredis-use-system-hiredis.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Register them.
 2023-03-20 08:32:32 -04:00
Maxim Cournoyer
9956638943
gnu: hiredis: Update to 1.1.0. 
* gnu/packages/databases.scm (hiredis): Update to 1.1.0.
 2023-03-20 08:32:32 -04:00
Maxim Cournoyer
4413b09fa3
gnu: redis: Use gexps and streamline. 
* gnu/packages/databases.scm (redis) [arguments]: Merge the use-correct-tclsh
into the patch-paths phase.  Use 'which' instead of assoc-ref.  Move
the #:make-flags argument before the #:phases one.  Use cc-for-target as the
value of the CC make flag.
[native-inputs]: Move field below arguments.
 2023-03-20 08:32:31 -04:00
Maxim Cournoyer
458b791f35
gnu: redis: Update to 7.0.9 [security fixes]. 
Fixes CVE-2023-25155, CVE-2022-36021 and more; see
https://raw.githubusercontent.com/redis/redis/7.0/00-RELEASENOTES.

* gnu/packages/databases.scm (redis): Update to 7.0.9.
[native-inputs]: Add pkg-config and which.
[arguments]: Add a patch-paths phase.  Skip the AOF-related tests.
[properties]: Add a lint-hidden-cve property.
 2023-03-20 08:32:31 -04:00
Andrew Tropin
3a2200e1ad
services: network-manager: Add missing shadowing of 'iwd?' field. 
* gnu/services/networking.scm (network-manager-shepherd-service): Add missing
shadowing of 'iwd?' field by using let* instead of let.
 2023-03-20 12:08:36 +04:00
Sergey Trofimov
1f36534c7e
home: 'home-environment-with-provenance' uses the HE location info. 
* gnu/home.scm (home-environment-with-provenance): Make `config-file`
optional, with the default taken from the HE location info.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-03-20 09:14:23 +04:00
conses
d429ff12e5
gnu: emacs-eshell-syntax-highlighting: Update to 0.3-0.1ba39a9. 
* gnu/packages/emacs-xyz.scm (emacs-eshell-syntax-highlighting): Update to
0.3-0.1ba39a9.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-03-20 09:11:04 +04:00
Andrew Tropin
8f5f505d90
gnu: Add emacs-geiser-eros. 
* gnu/packages/emacs-xyz.scm (emacs-geiser-eros): New variable.
 2023-03-20 09:10:37 +04:00
Leo Famulari
80d31a7478
gnu: linux-libre: Update kernel configs for 6.2.7. 
* gnu/packages/aux-files/linux-libre/6.2-arm.conf,
gnu/packages/aux-files/linux-libre/6.2-arm64.conf,
gnu/packages/aux-files/linux-libre/6.2-i686.conf,
gnu/packages/aux-files/linux-libre/6.2-x86_64.conf: Set some new configuration
options.
 2023-03-19 18:01:00 -04:00
Leo Famulari
90c8f62328
gnu: linux-libre 4.14: Update to 4.14.310. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.310.
(linux-libre-4.14-pristine-source, deblob-scripts-4.14): Update hashes.
 2023-03-19 18:00:59 -04:00
Leo Famulari
5617381fc1
gnu: linux-libre 4.19: Update to 4.19.278. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.278.
(linux-libre-4.19-pristine-source, deblob-scripts-4.19): Update hashes.
 2023-03-19 18:00:59 -04:00
Leo Famulari
fed3cf520e
gnu: linux-libre 5.4: Update to 5.4.237. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.237.
(linux-libre-5.4-pristine-source, deblob-scripts-5.4): Update hashes.
 2023-03-19 18:00:59 -04:00
Leo Famulari
400cb5cf58
gnu: linux-libre 5.10: Update to 5.10.175. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.175.
(linux-libre-5.10-pristine-source, deblob-scripts-5.10): Update hashes.
 2023-03-19 18:00:59 -04:00
Leo Famulari
fccf2b2fb5
gnu: linux-libre 5.15: Update to 5.15.103. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.103.
(linux-libre-5.15-pristine-source, deblob-scripts-5.15): Update hashes.
 2023-03-19 18:00:58 -04:00
Leo Famulari
d683261b23
gnu: linux-libre 6.1: Update to 6.1.20. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.20.
(linux-libre-6.1-pristine-source, deblob-scripts-6.1): Update hashes.
 2023-03-19 18:00:58 -04:00
Leo Famulari
0824203a22
gnu: linux-libre: Update to 6.2.7. 
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.7.
(linux-libre-6.2-pristine-source, deblob-scripts-6.2): Update hashes.
 2023-03-19 18:00:58 -04:00
Yovan Naumovski
65587224cd
gnu: atop: Update to 2.8.1. 
* gnu/packages/admin.scm (atop): Update to 2.8.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2023-03-19 16:55:52 -04:00
Ricardo Wurmus
896c2a0c45
gnu: r-flexmix: Update to 2.3-19. 
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-19.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
83978be759
gnu: r-xml: Update to 3.99-0.14. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.14.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
8cf778103e
gnu: r-blob: Update to 1.2.4. 
* gnu/packages/statistics.scm (r-blob): Update to 1.2.4.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
4532e7f415
gnu: r-gtable: Update to 0.3.2. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.2.
[propagated-inputs]: Add r-cli, r-glue, r-lifecycle, and r-rlang.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
157733c8f2
gnu: r-commonmark: Update to 1.9.0. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.9.0.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
f4a0f04cc3
gnu: r-qpdf: Update to 1.3.2. 
* gnu/packages/cran.scm (r-qpdf): Update to 1.3.2.
 2023-03-19 21:01:39 +01:00
Ricardo Wurmus
4def53a3fc
gnu: r-mlr3: Update to 0.15.0. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.15.0.
 2023-03-19 21:01:38 +01:00
Ricardo Wurmus
bd266c08b8
gnu: r-paradox: Update to 0.11.1. 
* gnu/packages/cran.scm (r-paradox): Update to 0.11.1.
 2023-03-19 21:01:38 +01:00
Ricardo Wurmus
cdc5dae016
gnu: r-anndata: Update to 0.7.5.6. 
* gnu/packages/cran.scm (r-anndata): Update to 0.7.5.6.
 2023-03-19 21:01:38 +01:00
Ricardo Wurmus
f2a67431f9
gnu: r-wk: Update to 0.7.2. 
* gnu/packages/cran.scm (r-wk): Update to 0.7.2.
 2023-03-19 21:01:38 +01:00
Ricardo Wurmus
8ab5665bfd
gnu: r-insight: Update to 0.19.1. 
* gnu/packages/cran.scm (r-insight): Update to 0.19.1.
 2023-03-19 21:01:37 +01:00
Ricardo Wurmus
4f4817e0f0
gnu: r-learnr: Update to 0.11.3. 
* gnu/packages/cran.scm (r-learnr): Update to 0.11.3.
 2023-03-19 21:01:37 +01:00
Ricardo Wurmus
f39d04ab93
gnu: r-renv: Update to 0.17.2. 
* gnu/packages/cran.scm (r-renv): Update to 0.17.2.
 2023-03-19 21:01:37 +01:00
Ricardo Wurmus
aea6e0ac39
gnu: r-vctrs: Update to 0.6.0. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.6.0.
 2023-03-19 21:01:37 +01:00
Ricardo Wurmus
911d141c0c
gnu: r-psych: Update to 2.3.3. 
* gnu/packages/cran.scm (r-psych): Update to 2.3.3.
 2023-03-19 21:01:37 +01:00
Ricardo Wurmus
12ea308ad9
gnu: r-rmpi: Update to 0.7-1. 
* gnu/packages/cran.scm (r-rmpi): Update to 0.7-1.
 2023-03-19 21:01:36 +01:00
Ricardo Wurmus
bcb059801d
gnu: r-htmlwidgets: Update to 1.6.2. 
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.6.2.
 2023-03-19 21:01:36 +01:00
Ricardo Wurmus
ac3c9b4344
gnu: r-servr: Update to 0.26. 
* gnu/packages/cran.scm (r-servr): Update to 0.26.
 2023-03-19 21:01:36 +01:00
Ricardo Wurmus
476f987f48
gnu: r-bestnormalize: Update to 1.9.0. 
* gnu/packages/cran.scm (r-bestnormalize): Update to 1.9.0.
[propagated-inputs]: Add r-generics.
 2023-03-19 21:01:30 +01:00
Ricardo Wurmus
e9c8c01e24
gnu: r-desctools: Update to 0.99.48. 
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.48.
[native-inputs]: Add r-r-rsp.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
675be97376
gnu: r-lubridate: Update to 1.9.2. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.9.2.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
7eb5c642d3
gnu: r-lme4: Update to 1.1-32. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-32.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
e2f20d9309
gnu: r-vgam: Update to 1.1-8. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-8.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
8a52db6989
gnu: r-hmisc: Update to 5.0-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 5.0-1.
[propagated-inputs]: Remove r-lattice, r-latticeextra, and r-survival; add r-colorspace,
r-knitr, and r-rmarkdown.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
843e4cc583
gnu: r-pkgmaker: Update to 0.32.8. 
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.32.8.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
3d4dd58647
gnu: r-rsqlite: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.0.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
36c8d51d14
gnu: r-rcpparmadillo: Update to 0.12.0.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.0.1.0.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
d90503f84f
gnu: r-readr: Update to 2.1.4. 
* gnu/packages/statistics.scm (r-readr): Update to 2.1.4.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
4fbee041a9
gnu: r-httr: Update to 1.4.5. 
* gnu/packages/statistics.scm (r-httr): Update to 1.4.5.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
ceb2a75dda
gnu: r-openssl: Update to 2.0.6. 
* gnu/packages/statistics.scm (r-openssl): Update to 2.0.6.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
57f8e9fc3d
gnu: r-data-table: Update to 1.14.8. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.14.8.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
73fc67e13e
gnu: r-chron: Update to 2.3-60. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-60.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
8e17a0412b
gnu: r-formula: Update to 1.2-5. 
* gnu/packages/statistics.scm (r-formula): Update to 1.2-5.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
ded63ea3ab
gnu: r-dbplyr: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.1.
[propagated-inputs]: Remove r-assertthat; add r-tidyr.
 2023-03-19 16:11:58 +01:00
Ricardo Wurmus
62b1347bf9
gnu: r-tibble: Update to 3.2.0. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.2.0.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
770c054345
gnu: r-rlang: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.1.0.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
6e29e15b25
gnu: r-testthat: Update to 3.1.7. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.7.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
8a7eb44065
gnu: r-gdtools: Update to 0.3.2. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.3.2.
[inputs]: Remove zlib.
[propagated-inputs]: Add r-curl and r-fontquiver.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
b6776e8f57
gnu: r-ggplot2: Update to 3.4.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.1.
[propagated-inputs]: Remove r-digest.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
ce3909f5f2
gnu: r-survival: Update to 3.5-5. 
* gnu/packages/statistics.scm (r-survival): Update to 3.5-5.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
78e9d066c1
gnu: r-mgcv: Update to 1.8-42. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-42.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
9cc826ec3d
gnu: r-mass: Update to 7.3-58.3. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-58.3.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
9e47cdbe90
gnu: r-measurements: Update to 1.5.0. 
* gnu/packages/cran.scm (r-measurements): Update to 1.5.0.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
abc7774dc2
gnu: r-automap: Update to 1.1-1. 
* gnu/packages/cran.scm (r-automap): Update to 1.1-1.
[propagated-inputs]: Remove r-maptools; add r-sf and r-stars.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
8cad279fa0
gnu: r-webmockr: Update to 0.9.0. 
* gnu/packages/cran.scm (r-webmockr): Update to 0.9.0.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
ba6d2701bb
gnu: r-filehash: Update to 2.4-5. 
* gnu/packages/cran.scm (r-filehash): Update to 2.4-5.
[propagated-inputs]: Add r-digest.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
95c6686176
gnu: r-paws: Update to 0.2.0. 
* gnu/packages/cran.scm (r-paws): Update to 0.2.0.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
94d6fcc7e0
gnu: r-paws-database: Update to 0.2.0. 
* gnu/packages/cran.scm (r-paws-database): Update to 0.2.0.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
d261c7b39b
gnu: r-paws-common: Update to 0.5.6. 
* gnu/packages/cran.scm (r-paws-common): Update to 0.5.6.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
327a72a503
gnu: r-rgeos: Update to 0.6-2. 
* gnu/packages/cran.scm (r-rgeos): Update to 0.6-2.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
b9122f3dd9
gnu: r-btm: Update to 0.3.7. 
* gnu/packages/cran.scm (r-btm): Update to 0.3.7.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
a0038b0f37
gnu: r-mlr3tuning: Update to 0.18.0. 
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.18.0.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
32cfd782ea
gnu: r-calculus: Update to 1.0.1. 
* gnu/packages/cran.scm (r-calculus): Update to 1.0.1.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
63fc234131
gnu: r-parsnip: Update to 1.0.4. 
* gnu/packages/cran.scm (r-parsnip): Update to 1.0.4.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
ccef849f84
gnu: r-workflows: Update to 1.1.3. 
* gnu/packages/cran.scm (r-workflows): Update to 1.1.3.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
b3cbbfedb8
gnu: r-igraph: Update to 1.4.1. 
* gnu/packages/cran.scm (r-igraph): Update to 1.4.1.
[native-inputs]: Add r-knitr.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
f44faf597c
gnu: r-rfast: Update to 2.0.7. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.7.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
efff0d4ccc
gnu: r-spatstat-random: Update to 3.1-4. 
* gnu/packages/cran.scm (r-spatstat-random): Update to 3.1-4.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
27ce0d8dda
gnu: r-spatstat-linnet: Update to 3.0-6. 
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.0-6.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
a006593f87
gnu: r-spatstat-geom: Update to 3.1-0. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.1-0.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
5ab9bbaf9e
gnu: r-spatstat-data: Update to 3.0-1. 
* gnu/packages/cran.scm (r-spatstat-data): Update to 3.0-1.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
b1cb45a92e
gnu: r-spatstat-sparse: Update to 3.0-1. 
* gnu/packages/cran.scm (r-spatstat-sparse): Update to 3.0-1.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
88fd6a8cdf
gnu: r-spatstat-utils: Update to 3.0-2. 
* gnu/packages/cran.scm (r-spatstat-utils): Update to 3.0-2.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
01fb0c128f
gnu: r-spatstat-model: Update to 3.2-1. 
* gnu/packages/cran.scm (r-spatstat-model): Update to 3.2-1.
 2023-03-19 16:11:57 +01:00
Ricardo Wurmus
760ecb43ee
gnu: r-spatstat-explore: Update to 3.1-0. 
* gnu/packages/cran.scm (r-spatstat-explore): Update to 3.1-0.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
b42e432e8b
gnu: r-conquer: Update to 1.3.3. 
* gnu/packages/cran.scm (r-conquer): Update to 1.3.3.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
dcd5c62a99
gnu: r-brms: Update to 2.19.0. 
* gnu/packages/cran.scm (r-brms): Update to 2.19.0.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add r-r-rsp.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
6ee4024334
gnu: r-posterior: Update to 1.4.1. 
* gnu/packages/cran.scm (r-posterior): Update to 1.4.1.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
541540eace
gnu: r-projpred: Update to 2.4.0. 
* gnu/packages/cran.scm (r-projpred): Update to 2.4.0.
[propagated-inputs]: Add r-abind, r-mclogit, r-nnet, r-ordinal, and r-ucminf.
[native-inputs]: Add r-rmarkdown.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
d8bda2d2c7
gnu: r-rstantools: Update to 2.3.0. 
* gnu/packages/cran.scm (r-rstantools): Update to 2.3.0.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
32acc4cc80
gnu: r-packrat: Update to 0.9.1. 
* gnu/packages/cran.scm (r-packrat): Update to 0.9.1.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
e943f613c1
gnu: r-butcher: Update to 0.3.2. 
* gnu/packages/cran.scm (r-butcher): Update to 0.3.2.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
0674832a61
gnu: r-forecast: Update to 8.21. 
* gnu/packages/cran.scm (r-forecast): Update to 8.21.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
0052b73ab4
gnu: r-anthropometry: Update to 1.19. 
* gnu/packages/cran.scm (r-anthropometry): Update to 1.19.
[propagated-inputs]: Remove r-depth; add r-ddalpha.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
b5f5452eff
gnu: r-tuner: Update to 1.4.3. 
* gnu/packages/cran.scm (r-tuner): Update to 1.4.3.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
73806cc7ac
gnu: r-reldist: Update to 1.7-2. 
* gnu/packages/cran.scm (r-reldist): Update to 1.7-2.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
619010805e
gnu: r-desolve: Update to 1.35. 
* gnu/packages/cran.scm (r-desolve): Update to 1.35.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
fba9954192
gnu: r-rgdal: Update to 1.6-5. 
* gnu/packages/cran.scm (r-rgdal): Update to 1.6-5.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
e9f1e6450e
gnu: r-terra: Update to 1.7-18. 
* gnu/packages/cran.scm (r-terra): Update to 1.7-18.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
96c4915d7c
gnu: r-rhpcblasctl: Update to 0.23-42. 
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.23-42.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
c040a41dbd
gnu: r-dae: Update to 3.2.15. 
* gnu/packages/cran.scm (r-dae): Update to 3.2.15.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
75befe143f
gnu: r-styler: Update to 1.9.1. 
* gnu/packages/cran.scm (r-styler): Update to 1.9.1.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
1a89402c3c
gnu: r-sccore: Update to 1.0.3. 
* gnu/packages/cran.scm (r-sccore): Update to 1.0.3.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
136e97ead8
gnu: r-float: Update to 0.3-1. 
* gnu/packages/cran.scm (r-float): Update to 0.3-1.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
3d9ebb293b
gnu: r-arrow: Update to 11.0.0.3. 
* gnu/packages/cran.scm (r-arrow): Update to 11.0.0.3.
[native-inputs]: Remove r-knitr.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
c3a3009862
gnu: apache-arrow: Update to 11.0.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 11.0.0.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
aaa27f9fe0
gnu: r-aplot: Update to 0.1.10. 
* gnu/packages/cran.scm (r-aplot): Update to 0.1.10.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
71db461a49
gnu: r-triebeard: Update to 0.4.1. 
* gnu/packages/cran.scm (r-triebeard): Update to 0.4.1.
[native-inputs]: Add r-knitr.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
b0b5b1050b
gnu: r-rms: Update to 6.5-0. 
* gnu/packages/cran.scm (r-rms): Update to 6.5-0.
[propagated-inputs]: Add r-colorspace.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
c4d53756d1
gnu: r-pegas: Update to 1.2. 
* gnu/packages/cran.scm (r-pegas): Update to 1.2.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
a5f8f7cd96
gnu: r-spdep: Update to 1.2-8. 
* gnu/packages/cran.scm (r-spdep): Update to 1.2-8.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
b652ba0b90
gnu: r-spdata: Update to 2.2.2. 
* gnu/packages/cran.scm (r-spdata): Update to 2.2.2.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
4caf1d2c51
gnu: r-classint: Update to 0.4-9. 
* gnu/packages/cran.scm (r-classint): Update to 0.4-9.
 2023-03-19 16:11:56 +01:00
Ricardo Wurmus
ef9c41c495
gnu: r-sets: Update to 1.0-24. 
* gnu/packages/cran.scm (r-sets): Update to 1.0-24.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
d1f91c3818
gnu: r-lavaan: Update to 0.6-15. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-15.
[propagated-inputs]: Add r-quadprog.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
a33fca6243
gnu: r-future: Update to 1.32.0. 
* gnu/packages/cran.scm (r-future): Update to 1.32.0.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
28926345d1
gnu: r-grimport: Update to 0.9-7. 
* gnu/packages/cran.scm (r-grimport): Update to 0.9-7.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
fdd54947b4
gnu: r-gridsvg: Update to 1.7-5. 
* gnu/packages/cran.scm (r-gridsvg): Update to 1.7-5.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
aa611093b6
gnu: r-admisc: Update to 0.31. 
* gnu/packages/cran.scm (r-admisc): Update to 0.31.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
ddca889b2d
gnu: r-adimpro: Update to 0.9.5. 
* gnu/packages/cran.scm (r-adimpro): Update to 0.9.5.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
c889281196
gnu: r-fmri: Update to 1.9.11. 
* gnu/packages/cran.scm (r-fmri): Update to 1.9.11.
[propagated-inputs]: Add r-oro-nifti.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
416aafd4e9
gnu: r-activity: Update to 1.3.3. 
* gnu/packages/cran.scm (r-activity): Update to 1.3.3.
[propagated-inputs]: Remove r-insol.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
7c42e08d83
gnu: r-biocmanager: Update to 1.30.20. 
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.20.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
783417f096
gnu: r-rcppparallel: Update to 5.1.7. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.1.7.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
b00e285dec
gnu: r-rcppalgos: Update to 2.7.2. 
* gnu/packages/cran.scm (r-rcppalgos): Update to 2.7.2.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
6f480dbba4
gnu: r-rslurm: Update to 0.6.2. 
* gnu/packages/cran.scm (r-rslurm): Update to 0.6.2.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
dc475ea2c0
gnu: r-gh: Update to 1.4.0. 
* gnu/packages/cran.scm (r-gh): Update to 1.4.0.
[propagated-inputs]: Remove r-httr; add r-httr2 and r-rlang.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
6bb6706c42
gnu: r-sjplot: Update to 2.8.13. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.13.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
9c92f11378
gnu: r-ggeffects: Update to 1.2.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.2.0.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
ee1fd5cefd
gnu: r-emmeans: Update to 1.8.5. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.8.5.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
2ae840725d
gnu: r-multcomp: Update to 1.4-23. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-23.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
473340074e
gnu: r-magick: Update to 2.7.4. 
* gnu/packages/cran.scm (r-magick): Update to 2.7.4.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
de6f3bf542
gnu: r-raster: Update to 3.6-20. 
* gnu/packages/cran.scm (r-raster): Update to 3.6-20.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
f63f68d0a0
gnu: r-ggnetwork: Update to 0.5.12. 
* gnu/packages/cran.scm (r-ggnetwork): Update to 0.5.12.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
c18cd55c9a
gnu: r-precrec: Update to 0.14.2. 
* gnu/packages/cran.scm (r-precrec): Update to 0.14.2.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
d6e7c205b2
gnu: r-argparse: Update to 2.2.2. 
* gnu/packages/cran.scm (r-argparse): Update to 2.2.2.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
e83194905b
gnu: r-findpython: Update to 1.0.8. 
* gnu/packages/cran.scm (r-findpython): Update to 1.0.8.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
8431c3144c
gnu: r-golem: Update to 0.4.0. 
* gnu/packages/cran.scm (r-golem): Update to 0.4.0.
[propagated-inputs]: Remove r-cli, r-crayon, r-desc, r-fs, r-pkgload, r-roxygen2,
r-rstudioapi, and r-usethis; add r-rlang.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
714be060dc
gnu: r-flextable: Update to 0.9.0. 
* gnu/packages/cran.scm (r-flextable): Update to 0.9.0.
[propagated-inputs]: Remove r-base64enc; add r-ragg.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
f29feaa2bb
gnu: r-officer: Update to 0.6.1. 
* gnu/packages/cran.scm (r-officer): Update to 0.6.1.
[propagated-inputs]: Add r-ragg.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
21d0faf01b
gnu: r-ggpubr: Update to 0.6.0. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.6.0.
 2023-03-19 16:11:55 +01:00
Ricardo Wurmus
ea825b9dc6
gnu: r-ggsci: Update to 3.0.0. 
* gnu/packages/cran.scm (r-ggsci): Update to 3.0.0.
[native-inputs]: Add r-knitr.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
88e8116f1e
gnu: r-renv: Update to 0.17.0. 
* gnu/packages/cran.scm (r-renv): Update to 0.17.0.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
78215fa8de
gnu: r-dtplyr: Update to 1.3.0. 
* gnu/packages/cran.scm (r-dtplyr): Update to 1.3.0.
[propagated-inputs]: Remove r-ellipsis; add r-cli.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
828e5333d9
gnu: r-randomizr: Update to 0.24.0. 
* gnu/packages/cran.scm (r-randomizr): Update to 0.24.0.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
73c2a74f99
gnu: r-np: Update to 0.60-17. 
* gnu/packages/cran.scm (r-np): Update to 0.60-17.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
e3840184e8
gnu: r-fbasics: Update to 4022.94. 
* gnu/packages/cran.scm (r-fbasics): Update to 4022.94.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
486f488204
gnu: r-tinytest: Update to 1.4.1. 
* gnu/packages/cran.scm (r-tinytest): Update to 1.4.1.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
69d13df510
gnu: r-seriation: Update to 1.4.2. 
* gnu/packages/cran.scm (r-seriation): Update to 1.4.2.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
acbd48f3ad
gnu: r-tsp: Update to 1.2-3. 
* gnu/packages/cran.scm (r-tsp): Update to 1.2-3.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
57fdd59015
gnu: r-gss: Update to 2.2-4. 
* gnu/packages/cran.scm (r-gss): Update to 2.2-4.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
18a7851eb8
gnu: r-scatterplot3d: Update to 0.3-43. 
* gnu/packages/cran.scm (r-scatterplot3d): Update to 0.3-43.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
4ce3068c3f
gnu: r-vcfr: Update to 1.14.0. 
* gnu/packages/cran.scm (r-vcfr): Update to 1.14.0.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
fa52f184fe
gnu: r-xts: Update to 0.13.0. 
* gnu/packages/cran.scm (r-xts): Update to 0.13.0.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
554cd5475d
gnu: r-mitml: Update to 0.4-5. 
* gnu/packages/cran.scm (r-mitml): Update to 0.4-5.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
149554b26b
gnu: r-recipes: Update to 1.0.5. 
* gnu/packages/cran.scm (r-recipes): Update to 1.0.5.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
ac2ddafaa5
gnu: r-broom: Update to 1.0.4. 
* gnu/packages/cran.scm (r-broom): Update to 1.0.4.
[propagated-inputs]: Add r-lifecycle.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
5eca0ff32c
gnu: r-ipred: Update to 0.9-14. 
* gnu/packages/cran.scm (r-ipred): Update to 0.9-14.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
ef51fdc672
gnu: r-rpostgresql: Update to 0.7-5. 
* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7-5.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
77d8f691a6
gnu: r-lava: Update to 1.7.2.1. 
* gnu/packages/cran.scm (r-lava): Update to 1.7.2.1.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
73c2d4ef23
gnu: r-inum: Update to 1.0-5. 
* gnu/packages/cran.scm (r-inum): Update to 1.0-5.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
da64f72edd
gnu: r-rmumps: Update to 5.2.1-23. 
* gnu/packages/cran.scm (r-rmumps): Update to 5.2.1-23.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
52d8c140b8
gnu: r-lamw: Update to 2.1.2. 
* gnu/packages/cran.scm (r-lamw): Update to 2.1.2.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
028166eec9
gnu: r-rcppnumerical: Update to 0.5-0. 
* gnu/packages/cran.scm (r-rcppnumerical): Update to 0.5-0.
[native-inputs]: Add r-knitr and r-rmarkdown.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
6264b80731
gnu: r-partykit: Update to 1.2-18. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-18.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
55c0a27187
gnu: r-ape: Update to 5.7-1. 
* gnu/packages/cran.scm (r-ape): Update to 5.7-1.
[propagated-inputs]: Add r-digest.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
42c4356f9c
gnu: r-ggmap: Update to 3.0.2. 
* gnu/packages/cran.scm (r-ggmap): Update to 3.0.2.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
441c60d2b2
gnu: r-gensa: Update to 1.1.8. 
* gnu/packages/cran.scm (r-gensa): Update to 1.1.8.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
4235e02dd9
gnu: r-rstpm2: Update to 1.6.2. 
* gnu/packages/cran.scm (r-rstpm2): Update to 1.6.2.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
17b68a4ac5
gnu: r-fastmap: Update to 1.1.1. 
* gnu/packages/cran.scm (r-fastmap): Update to 1.1.1.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
29f95b47ec
gnu: r-modelenv: Update to 0.1.1. 
* gnu/packages/cran.scm (r-modelenv): Update to 0.1.1.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
b71f95b08e
gnu: r-readxl: Update to 1.4.2. 
* gnu/packages/cran.scm (r-readxl): Update to 1.4.2.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
2416e5dcd4
gnu: r-ggalluvial: Update to 0.12.5. 
* gnu/packages/cran.scm (r-ggalluvial): Update to 0.12.5.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
02cdebebff
gnu: r-climaemet: Update to 1.1.0. 
* gnu/packages/cran.scm (r-climaemet): Update to 1.1.0.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
d1dbfcc4cb
gnu: r-gson: Update to 0.1.0. 
* gnu/packages/cran.scm (r-gson): Update to 0.1.0.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
58e114a702
gnu: r-googlevis: Update to 0.7.1. 
* gnu/packages/cran.scm (r-googlevis): Update to 0.7.1.
[native-inputs]: Add r-rmarkdown.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
332d829c6e
gnu: r-castor: Update to 1.7.8. 
* gnu/packages/cran.scm (r-castor): Update to 1.7.8.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
3556f4319c
gnu: r-cachem: Update to 1.0.7. 
* gnu/packages/cran.scm (r-cachem): Update to 1.0.7.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
ff80f791e9
gnu: r-afpt: Update to 1.1.0.3. 
* gnu/packages/cran.scm (r-afpt): Update to 1.1.0.3.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
a28a357675
gnu: r-mutoss: Update to 0.1-13. 
* gnu/packages/bioconductor.scm (r-mutoss): Update to 0.1-13.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
55710837d9
gnu: r-valr: Update to 0.6.7. 
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.7.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
ab428404de
gnu: r-numbat: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.2.2.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
9d4e62ccce
gnu: r-memuse: Adjust indentation. 
* gnu/packages/cran.scm (r-memuse): Adjust indentation.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
af861fdead
gnu: r-shadowtext: Update indentation. 
* gnu/packages/cran.scm (r-shadowtext): Adjust indentation.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
257ef3f659
gnu: Add r-mclogit. 
* gnu/packages/cran.scm (r-mclogit): New variable.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
8eccc02ec9
gnu: Add r-memisc. 
* gnu/packages/cran.scm (r-memisc): New variable.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
ac5011546d
gnu: r-qs: Update to 0.25.5. 
* gnu/packages/cran.scm (r-qs): Update to 0.25.5.
[inputs]: Remove zlib.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
a1fcc6c595
gnu: r-leaflet: Update to 2.1.2. 
* gnu/packages/cran.scm (r-leaflet): Update to 2.1.2.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
2c58e06a17
gnu: r-sf: Update to 1.0-11. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-11.
[inputs]: Remove zlib.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
47bce97778
gnu: r-ggvis: Update to 0.4.8. 
* gnu/packages/cran.scm (r-ggvis): Update to 0.4.8.
[source]: Remove five minified JavaScript files.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild and js-lodash.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
1b50213ad7
gnu: r-opencpu: Update to 2.2.9. 
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.9.
[source]: Remove two minified JavaScript files.
[arguments]: Add build phases 'process-javascript.
[native-inputs]: Add esbuild, r-r-rsp, and js-query.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
6b41dccf35
gnu: r-bookdown: Update to 0.33. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.33.
[source]: Delete three minified JavaScript files.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild, js-clipboard, js-lunarjs, and js-mathquill.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
fce72b3522
gnu: r-haven: Update to 2.5.2. 
* gnu/packages/cran.scm (r-haven): Update to 2.5.2.
[arguments]: Update to link with readstat.
[inputs]: Add zlib.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
40cb3c30fc
gnu: readstat: Update to 1.1.9. 
* gnu/packages/statistics.scm (readstat): Update to 1.1.9.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
5050034b4e
gnu: r-httpuv: Update to 1.6.9. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.9.
[inputs]: Replace libuv with libuv-for-r-httpuv.
[arguments]: Patch Makevars to link with that variant of libuv.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
ef86b0b12e
gnu: Add libuv-for-r-httpuv. 
* gnu/packages/libevent.scm (libuv-for-r-httpuv): New variable.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
e72d0d9208
gnu: r-dt: Update to 0.27. 
* gnu/packages/statistics.scm (r-dt): Update to 0.27.
 2023-03-19 16:11:49 +01:00
Lars-Dominik Braun
f9702aa9fd
gnu: Add python-brian2. 
* gnu/packages/machine-learning.scm (python-brian2): New variable.
 2023-03-19 11:33:52 +01:00
Lars-Dominik Braun
c16add7fd9
gnu: python-pillow: Fix CVE-2022-45199. 
Fixes: <https://issues.guix.gnu.org/issue/61172>

* gnu/packages/python-xyz.scm (python-pillow/security-fixes): New variable.
(python-pillow): Add replacement.
* gnu/packages/patches/python-pillow-CVE-2022-45199.patch: New file.
* gnu/local.mk: Register it.
 2023-03-19 10:57:00 +01:00
Liliana Marie Prikler
d7b4ecdb4c
gnu: Add a4pdf. 
* gnu/packages/pdf.scm (a4pdf): New variable.
 2023-03-19 09:25:36 +01:00
Liliana Marie Prikler
fa50974134
gnu: komikku: Update to 1.14.0. 
* gnu/packages/gnome.scm (komikku): Update to 1.14.0.
 2023-03-19 09:25:36 +01:00
Ekaitz Zarraga
d59eb81b5c
gnu: zig: Build against a baseline CPU. 
* gnu/packages/zig.scm (zig-0.10)[#:configure-flags]: Add
“-DZIG_TARGET_MCPU=baseline”.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-03-19 09:25:36 +01:00
Arun Isaac
34fed18169
gnu: Add tissue. 
* gnu/packages/web.scm (tissue): New variable.
 2023-03-18 17:23:32 +00:00
Yovan Naumovski
99114eb638
gnu: bemenu: Update to 0.6.14. 
* gnu/packages/xdisorg.scm (bemenu): Update to 0.6.14.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-17 23:20:36 +01:00
Bruno Victal
20aa4c30fb
services: dict: Deprecate 'dicod-service' procedure. 
* doc/guix.texi (Miscellaneous Services): Remove 'dicod-service' mention.
* gnu/services/dict.scm (dicod-service): Deprecate procedure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-17 23:20:36 +01:00
conses
511ae8325d
home: services: Add home-xmodmap-service-type. 
* gnu/home/services/desktop.scm (home-xmodmap-service-type)
(home-xmodmap-configuration): New variables;
(serialize-xmodmap-configuration)
(xmodmap-shepherd-service): New procedures;
* doc/guix.texi (Desktop Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-17 23:20:36 +01:00
Vivien Kraus
97a759769d
gnu: guile-gnutls: Do not expect gnulib shebangs to work. 
* gnu/packages/tls.scm (guile-gnutls) [phase patch-more-shebangs]: Fix how
autogen.sh invokes gnulib-tool, and how configure.ac invokes git-version-gen,
so as not to rely on shebangs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-17 23:20:35 +01:00
Vivien Kraus
25cad45639
gnu: gnulib: Restore shebangs. 
* gnu/packages/build-tools.scm (gnulib)[arguments]: Add
'restore-shebangs' phase.
[inputs, native-inputs]: Add bash-minimal.
[phase let-autogen-execute-gnulib-tool]: Specify a shell to execute
gnulib-tool from autogen.sh.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-17 23:20:35 +01:00
Ludovic Courtès
b5a70370f5
services: console-font: 'stop' method always returns #f. 
The 'stop' method of Shepherd services is supposed to return #f on
success.

* gnu/services/base.scm (console-font-shepherd-services): 'stop' method
returns #f.
 2023-03-17 23:20:35 +01:00
Maxim Cournoyer
2dc2722dc0
gnu: ccextractor: Update to 0.94 and fix build. 
* gnu/packages/gstreamer.scm (ccextractor): Update to 0.94.
[source]: Apply patches.  Add FIXME comment.
[build-system]: Switch to gnu-build-system.
[arguments]: Delete #tests? argument.  Delete trailing #t and use gexps.
Adjust configure flags accordingly, removing WITH_SHARING (doesn't exist for
Autoconf) and adding '--without-rust'.  Override check phase.
[native-inputs]: Remove labels.  Remove python-wrapper and perl.
[propagated-inputs]: Remove labels.  Remove nanomsg and zlib.  Replace
leptonica with leptonica-1.80.  replace tesseract-ocr with tesseract-ocr-4.
* gnu/packages/patches/ccextractor-add-missing-header.patch: New file.
* gnu/packages/patches/ccextractor-autoconf-tesseract.patch: Likewise.
* gnu/packages/patches/ccextractor-fix-ocr.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Register them.
 2023-03-17 10:40:02 -04:00
Maxim Cournoyer
8832acc24e
gnu: Add tesseract-ocr-4. 
* gnu/packages/ocr.scm (tesseract-ocr-4): New variable.
 2023-03-17 10:29:50 -04:00
Maxim Cournoyer
13539334ec
gnu: Add leptonica-1.80. 
* gnu/packages/image.scm (leptonica-1.80): New variable.
 2023-03-17 10:29:50 -04:00
Jan (janneke) Nieuwenhuizen
2714c9ef2d
home: services: ssh-agent: Handle setting of SSH_AUTH_SOCK. 
* gnu/home/services/ssh.scm (home-ssh-agent-environment-variables): New
procedure.
(home-ssh-agent-service-type): Use it as ahome-environment-service type
extension.
* doc/guix.texi (Secure Shell): Remove advice about, and examples of setting
SSH_AUTH_SOCK.
 2023-03-17 12:44:33 +01:00
Zhu Zihao
65f5398dfb
gnu: tdlib: Remove version 1.8.0. 
emacs-telega no longer depends on this package.

* gnu/packages/messaging.scm (tdlib-1.8.0): Remove variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-03-17 19:06:03 +08:00
Z572
c41bc99650
gnu: gamin: Fix cross-compilation to riscv64. 
* gnu/packages/gnome.scm (gamin)
[arguments]<#:phases>: Apply 'replace-config.sub for riscv64 too.
[native-inputs]: Add config for riscv64 too.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-03-17 18:55:05 +08:00
Z572
84a70d7c15
gnu: m17n-lib: Fix cross-compile. 
* gnu/packages/emacs.scm (m17n-lib)
[source]: Add m17n-lib-1.8.0-use-pkg-config-for-freetype.patch.
[native-inputs]: When cross-compile add pkg-config, libtool, gettext-minimal,
autoconf, automake.
[arguments]: When cross-compile, add phase to fix rpl_malloc undefined references.
* gnu/packages/patches/m17n-lib-1.8.0-use-pkg-config-for-freetype.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-03-17 18:33:38 +08:00
Z572
bf2c66b44e
gnu: m17n-db: Fix cross-compile. 
* gnu/packages/emacs.scm (m17n-db)
[inputs]: Move gettext-minimal to ...
[native-inputs]: ... here.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-03-17 18:33:38 +08:00
Peter Polidoro
00b12c65c4
gnu: kicad: Update to 7.0.1. 
* gnu/packages/engineering.scm (kicad): Update to 7.0.1.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-03-17 11:24:59 +01:00
宋文武
5dd0a6214f
gnu: retroarch: Update to 1.15.0. 
* gnu/packages/emulators.scm (retroarch): Update to 1.15.0.
[source]: Remove upstreamed patch.
[arguments]<#:phases>: Remove not needed changes for 'true' and 'zlib'.
Remove "--disable-builtinminiupnpc" from configure flags.
Add "--disable-builtinzlib" to configure flags.
[inputs]: Remove miniupnpc, which is not used any more.
* gnu/packages/patches/retroarch-LIBRETRO_DIRECTORY: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2023-03-17 18:19:31 +08:00
Nicolas Goaziou
3893758dac
gnu: emacs-pyim: Update to 5.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 5.3.1.
 2023-03-17 09:22:50 +01:00
Simon Streit
0c2eef25c5
gnu: emacs-bash-completion: Update to 3.1.1-1.b38f9bc. 
* gnu/packages/emacs-xyz.scm (emacs-bash-completion): Update to
3.1.1-1.b38f9bc.

Fix an issue <https://github.com/szermatt/emacs-bash-completion/issues/63>
where in a new shell completion would break and cancel the whole shell process
with it.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-03-17 09:22:50 +01:00
conses
156aac1b36
gnu: emacs-helpful: Update to 0.19-1.1c98f6f. 
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.19-1.1c98f6f.
[source]: Remove fix-docstring-test.patch.
[propagated-inputs]: Remove EMACS-SHUT-UP.
* gnu/packages/patches/emacs-helpful-fix-docstring-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Apply removal.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-03-17 09:22:49 +01:00
conses
1b64641955
gnu: Add emacs-srht. 
* gnu/packages/emacs-xyz.scm (emacs-srht): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-03-17 09:22:49 +01:00
Nicolas Goaziou
ec2788f077
gnu: Add texlive-onedown. 
* gnu/packages/tex.scm (texlive-onedown): New variable.
 2023-03-17 09:22:49 +01:00
Bruno Victal
c27da3241c
gnu: Add dropwatch. 
* gnu/packages/networking.scm (dropwatch): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-16 23:03:18 +01:00
Ludovic Courtès
8f219e658d
home: services: kodi, znc, ssh-agent: Use 'match-record'. 
* gnu/home/services/media.scm (home-kodi-services): Use 'match-record'
instead of 'match'.
* gnu/home/services/messaging.scm (home-znc-services): Likewise.
* gnu/home/services/ssh.scm (home-ssh-agent-services): Likewise.
 2023-03-16 23:03:17 +01:00
Jonathan Brielmaier
9cb1746467
gnu: icedove: Update to 102.9.0. 
* gnu/packages/gnuzilla.scm (%icedove-version): Update to 102.9.0.
(%icedove-build-id, thunderbird-comm-l10n): Update accordingly.
 2023-03-16 21:40:19 +01:00
Z572
1820dc7ce6
gnu: graphene: Fix cross-compilation. 
* gnu/packages/gtk.scm (graphene)[arguments]<#:configure-flags>: Use
'disabled' replace 'false' with introspection option.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-03-16 18:37:01 +00:00
Bruno Victal
3c12e40dca
gnu: guile-lib: Fix description. 
* gnu/packages/guile-xyz.scm (guile-lib)[description]: Delete garbage characters.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-03-16 18:37:01 +00:00
Wamm K. D
e97ab7fff7
gnu: Add python-rollbar. 
* gnu/packages/python-xyz.scm (python-rollbar): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-03-16 18:37:01 +00:00
Nicolas Goaziou
b79187ab50
gnu: xmoto: Improve package style. 
* gnu/packages/games.scm (xmoto)[snippet]: Remove trailing #T.
[arguments]: Use G-expressions. Remove trailing #T in phases.
[native-inputs]: Remove labels.
[inputs]: Remove labels.
 2023-03-16 18:08:44 +01:00
Ludovic Courtès
c68648a8a5
home: services: znc: Remove host-side use of (shepherd support). 
This is a followup to 193f547ca3, which
inadvertently pulled in (shepherd support) on the host side.

* gnu/home/services/messaging.scm (home-znc-services): Change 'command' and
'log-file' to gexps.  Add 'modules' field to 'shepherd-service'.
 2023-03-16 17:29:03 +01:00
Ludovic Courtès
6afd1fd6bc
home: services: kodi: Remove host-side use of (shepherd support). 
This is a followup to 70056b1b2b, which
inadvertently pulled in (shepherd support) on the host side.

* gnu/home/services/media.scm (home-kodi-services): Change 'command' and
'logfile' to gexps.  Add 'modules' field to 'shepherd-service'.
 2023-03-16 17:23:51 +01:00
Ludovic Courtès
be7e2bf7eb
home: services: ssh-agent: Remove host-side use of (shepherd support). 
This is a followup to 2c2f382e75, which
inadvertently pulled in (shepherd support) on the host side.

* gnu/home/services/ssh.scm (<home-ssh-agent-configuration>)[socket-directory]:
Change value to a gexp.
(home-ssh-agent-services): Change 'socket-file' and 'command' to a
gexp.  Add 'modules' field to 'shepherd-service'.
* doc/guix.texi (Secure Shell): Adjust accordingly.
 2023-03-16 17:09:46 +01:00
Paul A. Patience
b9d891140a
gnu: Add cl-hypergeometrica. 
* gnu/packages/lisp-xyz.scm (sbcl-hypergeometrica, cl-hypergeometrica):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-03-16 15:50:30 +01:00
Sharlatan Hellseher
9b2f14a756
gnu: cl-zr-utils: Fix build by disabling tests. 
* gnu/packages/lisp-xyz.scm (sbcl-zr-utils): Disable tests.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-03-16 15:50:30 +01:00
Sharlatan Hellseher
bd248fc709
gnu: cl-trial: Update to 1.2.0-2.db4e98e. 
* gnu/packages/lisp-xyz.scm (sbcl-trial): Update to 1.2.0-2.db4e98e.
  [arguments]{asd-systems}: Enable trial-alloy, trial-animation,
  trial-assimp, trial-gif, trial-glfw, trial-gltf, trial-jpeg,
  trial-notify, tiral-png, trial-sdl2, trial-terragen, trial-tga,
  trial-tiff, trial-workbench.
  [inputs]: Sort list alphabetically and add sbcl-3d-quaternions,
  sbcl-3d-transforms, sbcl-alloy, sbcl-atomics, sbcl-cl-glfw3,
  sbcl-cl-gltf, sbcl-classimp, sbcl-dns-client, sbcl-file-notify,
  sbcl-glop, sbcl-jzon, sbcl-language-codes, sbcl-promise, sbcl-sdl2,
  sbcl-simple-tasks, sbcl-system-locale,
  sbcl-trivial-extensible-sequences, sbcl-trivial-main-thread.
  Remove sbcl-jsow.
  (ecl-trial): Disable this while upstream issue is in review.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-03-16 15:50:29 +01:00
Sharlatan Hellseher
12b2507295
gnu: Add cl-dns-client. 
* gnu/packages/lisp-xyz.scm (cl-dns-client, ecl-dns-client,
  sbcl-dns-client): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-03-16 15:50:29 +01:00
Sharlatan Hellseher
37b70cfece
gnu: Add cl-gltf. 
* gnu/packages/lisp-xyz.scm (cl-gltf, sbcl-cl-gltf): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-03-16 15:50:29 +01:00
Sharlatan Hellseher
7a218a5b01
gnu: cl-jzon: Fix build by disabling tests on ECL. 
* gnu/packages/lisp-xyz.scm (ecl-jzon): Disable tests.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-03-16 15:50:29 +01:00