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1929 Commits

Author SHA1 Message Date
Ricardo Wurmus
4fd2622df8
gnu: python-tables: Update to 3.4.4. 
* gnu/packages/python.scm (python-tables): Update to 3.4.4.
 2018-09-05 12:01:23 +02:00
Marius Bakke
1f7d142000
gnu: python-matplotlib: Update to 2.2.3. 
* gnu/packages/python.scm (python-matplotlib): Update to 2.2.3.
 2018-09-03 19:09:00 +02:00
Ricardo Wurmus
02ddafef55
gnu: python-scipy: Disable broken tests. 
* gnu/packages/python.scm (python-scipy)[arguments]: Skip two broken tests.
 2018-09-03 13:49:32 +02:00
Ricardo Wurmus
9ce2f07ab6
gnu: python-matplotlib: Use python-pyqt-without-qtwebkit. 
* gnu/packages/python.scm (python-matplotlib)[propagated-inputs]: Replace
python-pyqt with python-pyqt-without-qtwebkit.
 2018-08-31 16:37:56 +02:00
Ricardo Wurmus
22b770ce00
gnu: Add python-anndata. 
* gnu/packages/python.scm (python-anndata): New variable.
 2018-08-29 17:06:13 +02:00
Ricardo Wurmus
d8b8eb3ff5
gnu: Add python-numba. 
* gnu/packages/python.scm (python-numba): New variable.
 2018-08-29 17:06:13 +02:00
Tobias Geerinckx-Rice
f882d7c7c5
gnu: python-apipkg: Update home page. 
* gnu/packages/python.scm (python-apipkg)[home-page]: Update.
 2018-08-28 22:31:00 +02:00
Leo Famulari
6635a3cc7f
gnu: python-pygit2: Update to 0.26.4. 
* gnu/packages/python.scm (python-pygit2, python2-pygit2): Update to 0.26.4.
[source]: Remove 'python-pygit2-disable-network-tests.patch'.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-27 15:13:46 -04:00
Paul Garlick
414f620fbb
gnu: python-pkgconfig: Enable tests. 
* gnu/packages/python.scm (python-pkgconfig)[arguments]: Replace 'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-22 15:13:52 -04:00
Paul Garlick
5fab62527c
gnu: python-pkgconfig: Update to 1.3.1. 
* gnu/packages/python.scm (python-pkgconfig): Update to 1.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-22 15:13:49 -04:00
Tobias Geerinckx-Rice
20b5b97381
gnu: python-rpy2: Update to 2.9.4. 
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4.
[arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM*
now that we can.
 2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice
db09a450d2
gnu: python-rpy2: Update home page. 
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
 2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice
52773e5cf4
gnu: python-py: Use HTTPS home page. 
* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
 2018-08-20 16:36:20 +02:00
Marius Bakke
df570bf271
Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
Marius Bakke
37d203985e
gnu: python-cython: Disable tests that fail on armhf. 
* gnu/packages/python.scm (python-cython)[arguments]: On armhf-linux, add
phase to disable two tests.
 2018-08-16 20:33:28 +02:00
Ricardo Wurmus
e9e9783e0a
gnu: Add python-argparse-manpage. 
* gnu/packages/python.scm (python-argparse-manpage): New variable.
 2018-08-16 17:04:10 +02:00
Tobias Geerinckx-Rice
a1c86d1db4
gnu: python-txamqp: Update to 0.8.2. 
* gnu/packages/python.scm (python-txamqp): Update to 0.8.2.
 2018-08-15 20:10:22 +02:00
Tobias Geerinckx-Rice
247d4e7271
gnu: python-pep8: Use HTTPS home page. 
Also add a comment about 1.7.1. This doesn't warrant a changelog entry,
so you never read this.

* gnu/packages/python.scm (python-pep8)[home-page]: Use HTTPS.
 2018-08-13 01:51:47 +02:00
Marius Bakke
6af7c2b178
Merge branch 'master' into staging 2018-08-07 00:50:25 +02:00
Ricardo Wurmus
0fb0db0022
gnu: python-scipy: Only run default tests. 
* gnu/packages/python.scm (python-scipy)[arguments]: Only run the default test
suite.  The full test suite is too expensive and brittle.
 2018-08-03 15:24:40 +02:00
Marius Bakke
869250809b
Merge branch 'master' into staging 2018-07-30 18:08:28 +02:00
Christopher Baines
6465497fb9
gnu: Remove duplicated python-pafy. 
It was first added in 02f8f804f0, then again in
2dd12924cf.

* gnu/packages/python.scm (python-pafy): Remove duplicated package definition.
 2018-07-29 17:57:53 +01:00
Marius Bakke
1af575f04d
Merge branch 'master' into staging 2018-07-28 18:34:59 +02:00
Ricardo Wurmus
ed2dfe3955
gnu: Add snakemake-4. 
* gnu/packages/python.scm (snakemake-4): New variable.
* gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq,
pigx-chipseq)[inputs]: Use it.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus
269f100330
gnu: snakemake: Add missing dependencies. 
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie,
python-docutils, python-jinja2, python-jsonschema, and python-networkx.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus
216a72a957
gnu: Add python-datrie. 
* gnu/packages/python.scm (python-datrie): New variable.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus
b62715aa82
gnu: snakemake: Update to 5.2.0. 
* gnu/packages/python.scm (snakemake): Update to 5.2.0.
 2018-07-27 14:19:43 +02:00
Leo Famulari
c69d11c593
gnu: Cython: Update to 0.28.4. 
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.28.4.
[arguments]: Use invoke.
 2018-07-19 18:28:29 -04:00
Danny Milosavljevic
a545090ce5
gnu: python-cairocffi: Fix loading of shared libraries. 
Fixes <https://bugs.gnu.org/32170>.

* gnu/packages/patches/python-cairocffi-dlopen-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-cairocffi)[inputs]: Add glib, gtk+, pango.
[native-inputs]: Add python-pytest.
[arguments]: Enable tests.
[arguments]<#:phases>[patch-paths]: New phase.
 2018-07-16 23:51:38 +02:00
Leo Famulari
8e632a6435
gnu: python-pyasn1-modules: Update to 0.2.2. 
* gnu/packages/python.scm (python-pyasn1-modules, python2-pyasn1-modules):
Update to 0.2.2.
 2018-07-16 16:47:55 -04:00
Leo Famulari
90f38fb661
gnu: python-pyasn1: Update to 0.4.3. 
* gnu/packages/python.scm (python-pyasn1, python2-pyasn1): Update to 0.4.3.
 2018-07-16 16:47:52 -04:00
Efraim Flashner
6c10675928
gnu: python-xenon: Update to 0.5.4. 
* gnu/packages/python.scm (python-xenon): Update to 0.5.4.
[arguments]: Remove part of custom 'patch-test-requirements phase.
 2018-07-14 23:19:42 +03:00
Ben Woodcroft
5908818e30
gnu: python-h5py: Update to 2.8.0. 
* gnu/packages/python.scm (python-h5py): Update to 2.8.0.
 2018-07-15 00:43:57 +10:00
Marius Bakke
49b6dc2b4e
Merge branch 'staging' 2018-07-13 00:25:45 +02:00
Marius Bakke
250276a202
gnu: python-pyyaml: Update to 3.13. 
* gnu/packages/python.scm (python-pyyaml): Update to 3.13.
 2018-07-12 17:21:15 +02:00
Marius Bakke
873325b030
Merge branch 'master' into staging 2018-07-08 23:58:22 +02:00
Nicolas Goaziou
2cde6e1de3
gnu: Add python-commandlines. 
* gnu/packages/python.scm (python-commandlines): New variable.
 2018-07-02 17:50:20 +02:00
Marius Bakke
92af3ce417
Merge branch 'master' into staging 2018-07-02 12:18:58 +02:00
Tobias Geerinckx-Rice
4df9c195f2
gnu: python-rst.linker: Update to 1.10. 
* gnu/packages/python.scm (python-rst.linker): Update to 1.10.
 2018-06-30 03:46:18 +02:00
Tobias Geerinckx-Rice
e0e7ea7459
gnu: python-xopen: Update to 0.3.3. 
* gnu/packages/python.scm (python-xopen): Update to 0.3.3.
 2018-06-30 03:46:17 +02:00
Tobias Geerinckx-Rice
af029a80dd
gnu: python2-xopen: Fix build. 
* gnu/packages/python.scm (python2-xopen)[propagated-inputs]: Add
python2-bz2file.
 2018-06-30 03:46:17 +02:00
Tobias Geerinckx-Rice
d5ed14bdda
gnu: python-parso: Update to 0.2.1. 
* gnu/packages/python.scm (python-parso): Update to 0.2.1.
 2018-06-30 03:46:17 +02:00
Marius Bakke
9e9bc87eb8
gnu: python-pandas: Update to 0.23.1. 
* gnu/packages/python.scm (python-pandas): Update to 0.23.1.
[arguments]: Drop new S3 test.
[native-inputs]: Add PYTHON-BEAUTIFULSOUP4 and PYTHON-HTML5LIB.
 2018-06-28 22:03:31 +02:00
Marius Bakke
028fc15528
gnu: python-numpy: Update to 1.14.5. 
* gnu/packages/python.scm (python-numpy): Update to 1.14.5.
 2018-06-28 22:03:31 +02:00
Marius Bakke
a167873c67
Merge branch 'master' into staging 2018-06-26 13:51:26 +02:00
Tobias Geerinckx-Rice
5666ca5edc
gnu: python-pathpy: Update to 11.0.1. 
* gnu/packages/python.scm (python-pathpy): Update to 11.0.1.
 2018-06-26 04:17:49 +02:00
Oleg Pykhalov
02e2d18297
gnu: Add python-send2trash. 
* gnu/packages/python.scm (python-send2trash, python2-send2trash): New public
variables.
 2018-06-23 19:49:11 +03:00
Marius Bakke
6969c4de44
Merge branch 'master' into staging 2018-06-18 15:29:38 +02:00
Leo Famulari
44d1b9569b
gnu: python-click-log: Update to 0.3.2. 
* gnu/packages/python.scm (python-click-log): Update to 0.3.2.
 2018-06-14 15:51:56 -04:00
Clément Lassieur
85d79a79e4
gnu: Add python-dns-lexicon. 
* gnu/packages/python.scm (python-dns-lexicon, python2-dns-lexicon): New
variables.
 2018-06-14 08:18:06 +02:00