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Author SHA1 Message Date
Alexandros Theodotou
bea98f9a0b
gnu: Add libsoundio. 
* gnu/packages/audio.scm (libsoundio): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 14:52:45 +02:00
Mathieu Othacehe
ade7638d84
Revert "gnu: openblas: Update to 0.3.10." 
This reverts commit c59e9f0a03 because it
triggers too many rebuilds.
 2020-09-18 14:05:51 +02:00
Prafulla Giri
cd6ec6706c
gnu: kdenlive: Simplify 'wrap-executable phase. 
* gnu/packages/kde.scm (kdenlive)[arguments]: Use getenv to set the
values of QT_PLUGIN_PATH and QML2_IMPORT_PATH in the wrapper during
the 'wrap-executable phase.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:53:38 +02:00
Prafulla Giri
34b6dd36bb
gnu: kdenlive: Add missing dependencies. 
This allows to browse the file-system using kdenlive's own file-chooser.

* gnu/packages/kde.scm (kdenlive)
[native-inputs]: Add pkg-config.
[inputs]: Add purpose and qtwebkit.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:53:05 +02:00
Prafulla Giri
18bf33a7c0
gnu: kdenlive: Update to 20.08.1. 
* gnu/packages/kde.scm (kdenlive): Update to 20.08.1.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:52:41 +02:00
Vinicius Monego
7802875abc
gnu: Add python-beren. 
* gnu/packages/python-web.scm (python-beren): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:47:01 +02:00
Vinicius Monego
e1e577e088
gnu: Add python-apiron. 
* gnu/packages/python-web.scm (python-apiron): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:47:00 +02:00
Michael Rohleder
6182897c98
gnu: plantuml: Update to 1.2020.16. 
* gnu/packages/uml.scm (plantuml): Update to 1.2020.16.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:18:09 +02:00
Michael Rohleder
a1f4c48721
gnu: emacs-vterm: Update to 0-3.14e4afd. 
* gnu/packages/emacs-xyz.scm (emacs-vterm): Update to 0-3.14e4afd.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:18:09 +02:00
Morgan Smith
de4705d92d
gnu: adms: Update to 2.3.7. 
* gnu/packages/engineering.scm (adms): Update to 2.3.7.
[source]: Change the url to github and use the git-fetch method.
[native-inputs]: Add "autoconf", "automake", "libtool", "perl" and
"perl-xml-libxml".
[home-page]: Use the github page.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 09:48:45 +02:00
Greg Hogan
ff128dc633
gnu: python-networkx: Update to 2.5. 
* gnu/packages/python-xyz.scm (python-networkx): Update to 2.5.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 09:33:44 +02:00
Vinicius Monego
13ba3dc8a3
gnu: Add cozy. 
* gnu/packages/ebook.scm (cozy): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 09:12:02 +02:00
Greg Hogan
c59e9f0a03
gnu: openblas: Update to 0.3.10. 
* gnu/packages/maths.scm (openblas): Update to 0.3.10.
[source]: Fetch from github.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 08:57:48 +02:00
Ludovic Courtès
98b89f4321
gnu: gnome-settings-daemon: Add "guix gc" to low disk space notification. 
* gnu/packages/patches/gnome-settings-daemon-gc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-settings-daemon)[source]: Use it.
 2020-09-18 08:45:40 +02:00
Ludovic Courtès
5ce6c2d91d
gnu: gnome-settings-daemon: Record absolute file name of Baobab. 
* gnu/packages/gnome.scm (gnome-settings-daemon)[arguments]: Add
'set-baobab-file-name' phase.
[inputs]: Add BAOBAB.
 2020-09-18 08:44:48 +02:00
Ludovic Courtès
13a5d9f9e3
gnu: purple-mattermost: Update to 1.2-0.158ce20. 
* gnu/packages/messaging.scm (purple-mattermost): Update to commit 158ce20.
 2020-09-18 08:44:48 +02:00
Leo Famulari
679d5e6b3d
gnu: Properly credit Konrad Hinsen. 
This is a followup to commit a96873565d.

* gnu/packages/python-web.scm: Update list of copyright holders.
 2020-09-17 13:28:03 -04:00
Konrad Hinsen
a96873565d
gnu: Add python-requests-ftp. 
* gnu/packages/python-web.scm (python-requests-ftp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-09-17 13:25:36 -04:00
Eric Bavier
34d150dcb2
gnu: hdf5: Update to 1.10.7. 
Fixes CVE-2018-13870, CVE-2018-13869 and CVE-2018-17435.

* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.7.
 2020-09-17 11:37:02 -05:00
Paul Garlick
94ca1e19b3
gnu: Add texlive-units. 
* gnu/packages/tex.scm (texlive-units): New variable.
 2020-09-17 16:21:28 +01:00
Vinicius Monego
9911dc10e2
gnu: python-libsass: Update to 0.20.1. 
* gnu/packages/python-xyz.scm (python-libsass): Update to 0.20.1.
[arguments]: Enable test that failed in the previous version.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-17 16:18:00 +02:00
Greg Hogan
b96f4f0995
gnu: openmpi: Update to 4.0.5. 
* gnu/packages/mpi.scm (openmpi): Update to 4.0.5.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-17 16:18:00 +02:00
Jelle Licht
9e59ae320e
gnu: emacs-counsel-projectile: Update to 0.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-counsel-projectile): Update to 0.3.1.
 2020-09-17 14:19:41 +02:00
Tobias Geerinckx-Rice
88c7175161
gnu: grammalecte: Update to 1.12.2. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.12.2.
 2020-09-17 14:10:43 +02:00
Tobias Geerinckx-Rice
1306283843
gnu: easyrpg-player: Update to 0.6.2.2. 
* gnu/packages/easyrpg.scm (easyrpg-player): Update to 0.6.2.2.
 2020-09-17 14:10:42 +02:00
Tobias Geerinckx-Rice
dc2f0e703a
gnu: python-psycopg2: Update to 2.8.6. 
* gnu/packages/databases.scm (python-psycopg2): Update to 2.8.6.
 2020-09-17 14:10:42 +02:00
Arne Babenhauserheide
8b030edf02
gnu: guile-wisp: Update to 1.0.3 
* gnu/packages/guile-xyz.scm (guile-wisp): Update to 1.0.3.
[source]: Access via hg and change from bitbucket to hg.sr.ht.
[arguments]: Replace 'bootstrap phase; remove Guile 3 patch
because Guile 3 is supported in 1.0.3.
[native-inputs]: Add autoconf and automake.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-17 13:45:43 +02:00
Konrad Hinsen
731354b8d7
gnu: Add python-pypandoc. 
* gnu/packages/python-xyz.scm (python-pypandoc): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-17 11:41:47 +02:00
Mathieu Othacehe
cc5f9348b8
gnu: cuirass: Update to 0.0.1-46.89f0dbc. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-46.89f0dbc.
 2020-09-17 10:45:38 +02:00
Efraim Flashner
6feb7a2107
gnu: vim-airline: Don't install tests. 
* gnu/packages/vim.scm (vim-airline)[arguments]: Adjust install-plan to
not install tests.
 2020-09-17 00:25:42 +03:00
Tobias Geerinckx-Rice
a765b7b043
gnu: bind: Update to 9.16.7. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.7.
 2020-09-16 23:21:17 +02:00
Vinicius Monego
8d557d4167
gnu: Add emacs-sbt-mode. 
* gnu/packages/emacs-xyz.scm (emacs-sbt-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-09-16 22:26:28 +02:00
Vinicius Monego
98dc073afc
gnu: emacs-fountain-mode: Update to 3.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-fountain-mode): Update to 3.3.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-09-16 22:18:27 +02:00
Morgan Smith
67b1ca4283
gnu: Add emacs-eshell-syntax-highlighting. 
* gnu/packages/emacs-xyz.scm (emacs-eshell-syntax-highlighting): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-09-16 22:06:06 +02:00
Pierre Langlois
891b045f38
gnu: mailutils: Fix unitialized variable in readmsg. 
Fixes <https://bugs.gnu.org/43088>.

* gnu/packages/patches/mailutils-fix-uninitialized-variable.patch: New
file.
* gnu/packages/mail.scm (mailutils)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
 2020-09-16 19:55:14 +01:00
Tobias Geerinckx-Rice
7194b63833
gnu: youtube-dl: Refer to ffmpeg. 
Addresses <https://issues.guix.gnu.org/43418>.

* gnu/packages/video.scm (youtube-dl)[inputs]: Add ffmpeg.
[arguments]: Fall back to input ffmpeg instead of searching $PATH.
 2020-09-16 13:50:21 +02:00
Paul Garlick
5674ea45a3
gnu: Add texlive-todonotes. 
* gnu/packages/tex.scm (texlive-todonotes): New variable.
 2020-09-16 12:22:59 +01:00
Jan (janneke) Nieuwenhuizen
b85863f7ce
gnu: commencement: bash-mesboot0: Break store file-name in comment. 
Fixes <https://bugs.gnu.org/43005>.
Reported by Vagrant Cascadian <vagrant@debian.org>.

* gnu/packages/commencement.scm (bash-mesboot0)[arguments]: Break store file
name in comment and add unquoted string-append to silence the
’assert-no-store-file-names’ check.  The store file name check is really meant
for code; this file name was unfortunately used is a comment.
 2020-09-16 12:43:36 +02:00
Pierre Neidhardt
9e7b2658d9
gnu: sbcl-hu.dwim.common: Fix missing description. 
* gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.common)[description]: Repeat the
synopsis since there is nothing more to say about this library.
 2020-09-16 09:54:53 +02:00
Gabriel Arazas
feb657d244
gnu: Add rust-ansi-colours-1. 
* gnu/packages/crates-io.scm (rust-ansi-colours-1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-16 09:46:48 +03:00
Gabriel Arazas
c034fcd27f
gnu: Add rust-delta-e-0.2. 
* gnu/packages/crates-io.scm (rust-delta-e-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-16 09:43:17 +03:00
Gabriel Arazas
833dfde76e
gnu: Add rust-lab-0.8, rust-lab-0.7, rust-lab-0.4. 
* gnu/packages/crates-io.scm (rust-lab-0.8, rust-lab-0.7,
rust-lab-0.4): New variables.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-16 09:38:54 +03:00
Leo Famulari
cca5720f41
gnu: Fix fetching the linux-libre deblobbing script. 
This is a followup to commit 105a037090.

* gnu/packages/linux.scm (linux-libre-deblob-scripts): Truncate the version in
the file-name, not the source URI.
 2020-09-15 23:21:57 -04:00
Tobias Geerinckx-Rice
3c9294c05f
gnu: gnome-bluetooth: Update to 3.34.1. 
* gnu/packages/gnome.scm (gnome-bluetooth): Update to 3.34.1.
 2020-09-16 00:29:40 +02:00
Tobias Geerinckx-Rice
d6f1e81356
gnu: libimagequant: Update to 2.12.6. 
* gnu/packages/image.scm (libimagequant): Update to 2.12.6.
 2020-09-16 00:29:39 +02:00
Tobias Geerinckx-Rice
6a638349a0
gnu: tor: Update to 0.4.4.5. 
* gnu/packages/tor.scm (tor): Update to 0.4.4.5.
 2020-09-15 23:36:44 +02:00
Tobias Geerinckx-Rice
6564ffd7ad
gnu: surgescript: Update to 0.5.4.4. 
* gnu/packages/game-development.scm (surgescript): Update to 0.5.4.4.
 2020-09-15 23:36:43 +02:00
Tobias Geerinckx-Rice
c4593535ea
gnu: waylandpp: Update to 0.2.8. 
* gnu/packages/freedesktop.scm (waylandpp): Update to 0.2.8.
 2020-09-15 23:36:43 +02:00
Tobias Geerinckx-Rice
fac43c9259
gnu: homebank: Update to 5.4.3. 
* gnu/packages/finance.scm (homebank): Update to 5.4.3.
 2020-09-15 23:36:42 +02:00
Tobias Geerinckx-Rice
afb3fed9c7
gnu: dico: Update to 2.10. 
* gnu/packages/dico.scm (dico): Update to 2.10.
 2020-09-15 23:36:42 +02:00
Tobias Geerinckx-Rice
e4574a66fe
gnu: python-pbkdf2: Fix typo in description. 
* gnu/packages/python-xyz.scm (python-pbkdf2)[description]: Fix typo.
 2020-09-15 20:59:16 +02:00
Tobias Geerinckx-Rice
49478f9dbd
gnu: dump: Fix typo in description. 
* gnu/packages/backup.scm (dump)[description]: Fix typo.
 2020-09-15 20:59:15 +02:00
Tobias Geerinckx-Rice
04912d4f9f
gnu: cryptsetup: Update to 2.3.4. 
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 2.3.4.
 2020-09-15 20:59:15 +02:00
Leo Prikler
757764b797
gnu: Add gtranslator. 
* gnu/packages/gnome.scm (gtranslator): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-15 20:52:11 +02:00
Leo Prikler
9ede39d64f
gnu: Add libgda. 
* gnu/packages/gnome.scm (libgda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-15 20:52:11 +02:00
Mike Rosset
52139ce5b7
gnu: jack-2: Update to 1.9.14. 
* gnu/packages/audio.scm (jack-2): Update to 1.9.14.
[arguments]: Add environment variable to phase 'set-linkflags.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2020-09-15 20:07:52 +02:00
Ludovic Courtès
f5163902d7
gnu: guix: Update to 1c21468. 
* gnu/packages/package-management.scm (guix): Update to 1c21468.
 2020-09-15 15:29:30 +02:00
Tobias Geerinckx-Rice
e880e63740
gnu: fio: Update to 3.23. 
* gnu/packages/benchmark.scm (fio): Update to 3.23.
 2020-09-15 14:57:07 +02:00
Tobias Geerinckx-Rice
6493d0eec4
gnu: htop: Update to 3.0.2. 
* gnu/packages/admin.scm (htop): Update to 3.0.2.
[native-inputs]: Remove python-wrapper.
 2020-09-15 14:57:07 +02:00
Gabriel Arazas
1c21468c7a
gnu: Add goxel. 
* gnu/packages/graphics.scm (goxel): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-15 14:40:20 +02:00
Pierre Neidhardt
6e05adbb8f
gnu: sbcl-trivial-clipboard: Update to 20200904. 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-clipboard): Update to 20200904.
 2020-09-15 13:26:00 +02:00
Efraim Flashner
a8360892d7
gnu: waybar: Fix build. 
Reported by bdju.

* gnu/packages/pretty-print.scm (fmt-6): New variable.
* gnu/packages/wm.scm (waybar)[inputs]: Replace fmt with fmt-6.
 2020-09-15 12:02:28 +03:00
Nicolas Goaziou
b10edcb9d4
gnu: emacs-org: Update to 9.4. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.4.
(emacs-org-contrib): Update to 20200914.
 2020-09-15 09:21:15 +02:00
Efraim Flashner
af4c633bbb
gnu: roffit: Adjust install phase. 
* gnu/packages/groff.scm (roffit)[arguments]: Remove make-flags. Remove
custom 'pre-install phase. Replace 'install phase to also install
manpage.
 2020-09-15 09:41:37 +03:00
Efraim Flashner
8aea855ac1
gnu: roffit: Wrap binary. 
Fixes <https://debbugs.gnu.org/43306>.

* gnu/packages/groff.scm (roffit)[arguments]: Add 'wrap-binary phase to
help find perl libraries.
 2020-09-15 09:37:18 +03:00
Ricardo Wurmus
818237d947
gnu: bsequencer: Update to 1.8.0. 
* gnu/packages/music.scm (bsequencer): Update to 1.8.0.
 2020-09-15 01:40:54 +02:00
Prafulla Giri
8ba70a6ad3
gnu: kdenlive: Change source URL to follow permanent redirection. 
* gnu/packages/kde.scm (kdenlive)[source]: Change url to follow
permanent redirection.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 23:04:11 +02:00
Prafulla Giri
e33a1e546a
gnu: kde: kdenlive: Make breeze theme available at runtime. 
* gnu/packages/kde.scm (kdenlive):
[inputs]: Add breeze.
[arguments]: In wrap-program phase, add XDG_DATA_DIRS to include
the 'share' sub-directory of the package breeze.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 23:04:11 +02:00
Sébastien Lerique
0d63abebd1
gnu: Add ripmime. 
* gnu/packages/mail.scm (ripmime): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 23:04:10 +02:00
Ludovic Courtès
6cb573889b
gnu: guix: Update to 846403e. 
* gnu/packages/package-management.scm (guix): Update to 846403e.
 2020-09-14 23:04:10 +02:00
Efraim Flashner
276ab588a8
gnu: maven-compiler-plugin: Don't use unstable tarball. 
* gnu/packages/maven.scm (maven-compiler-plugin)[source]: Download using
git-fetch.
 2020-09-14 23:13:22 +03:00
Efraim Flashner
7cd50ad7fa
gnu: maven-resources-plugin: Don't use unstable tarball. 
* gnu/packages/maven.scm (maven-resources-plugin)[source]: Download
using git-fetch.
 2020-09-14 23:13:22 +03:00
Efraim Flashner
05cd8837eb
gnu: maven-jar-plugin: Don't use unstable tarball. 
* gnu/packages/maven.scm (maven-jar-plugin)[source]: Download using
git-fetch.
 2020-09-14 23:13:22 +03:00
Efraim Flashner
819ead3592
gnu: java-hdrhistogram: Don't use unstable tarball. 
* gnu/packages/java.scm (java-hdrhistogram)[source]: Download using
git-fetch.
[arguments]: Add phase to make source writable.
 2020-09-14 23:13:22 +03:00
Ricardo Wurmus
3159fcf145
gnu: r-wgcna: Move to (gnu packages bioconductor). 
This is a follow-up to commit 6e0ab26f31.

* gnu/packages/cran.scm (r-wgcna): Move from here...
* gnu/packages/bioconductor.scm (r-wgcna): ...to here.
 2020-09-14 21:40:15 +02:00
zimoun
3292f6eda0
gnu: r-fithic: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-fithic): Move from here...
* gnu/packages/bioconductor.scm (r-fithic): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:15 +02:00
zimoun
7df42d3774
gnu: r-hitc: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-hitc): Move from here...
* gnu/packages/bioconductor.scm (r-hitc): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:15 +02:00
zimoun
63b75c01c2
gnu: r-hdf5array: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-hdf5array): Move from here...
* gnu/packages/bioconductor.scm (r-hdf5array): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:10 +02:00
zimoun
c61268c1b7
gnu: r-rhdf5lib: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5lib): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:33 +02:00
zimoun
8863c14cd8
gnu: r-beachmat: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-beachmat): Move from here...
* gnu/packages/bioconductor.scm (r-beachmat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:30 +02:00
zimoun
916a3e59ab
gnu: r-singlecellexperiment: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Move from here...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:27 +02:00
zimoun
6b1946b334
gnu: r-scater: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-scater): Move from here...
* gnu/packages/bioconductor.scm (r-scater): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:24 +02:00
zimoun
1193b77e60
gnu: r-scran: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-scran): Move from here...
* gnu/packages/bioconductor.scm (r-scran): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:22 +02:00
zimoun
8c7c6db408
gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:19 +02:00
zimoun
b3a998374c
gnu: r-rgraphviz: Move to (gnu packages bioconductor). 
* gnu/packages/graph.scm (r-rgraphviz): Move from here...
* gnu/packages/bioconductor.scm (r-rgraphviz): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:16 +02:00
zimoun
6e0ab26f31
gnu: r-preprocesscore: Move to (gnu packages bioconductor). 
* gnu/packages/statistics.scm (r-preprocesscore): Move from here...
* gnu/packages/bioconductor.scm (r-preprocesscore): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:12 +02:00
zimoun
f4d920b9f7
gnu: r-fourcseq: Move to (gnu packages bioconductor). 
* gnu/packages/cran.scm (r-fourcseq): Move from here...
* gnu/packages/bioconductor.scm (r-fourcseq): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:00 +02:00
Ricardo Wurmus
62881beb4d
gnu: r-rgraphviz: Build reproducibly. 
Fixes <https://bugs.gnu.org/43398>.

* gnu/packages/graph.scm (r-rgraphviz)[arguments]: Add phase
"make-reproducible".
 2020-09-14 21:25:17 +02:00
Ricardo Wurmus
d60739dff2
gnu: r-quantreg: Update to 5.67. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.67.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
2feb943558
gnu: r-cowplot: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.0.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
90ff99d9c5
gnu: r-rcpparmadillo: Update to 0.9.900.3.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.3.0.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
995641369e
gnu: r-ggdendro: Update to 0.1.22. 
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.22.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
7e2aa0efba
gnu: r-stringi: Update to 1.5.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.5.3.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
98f76dbcfb
gnu: r-mass: Update to 7.3-53. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
1c1b941902
gnu: r-diversitree: Update to 0.9-14. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-14.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
8731d274ae
gnu: r-seurat: Update to 3.2.1. 
* gnu/packages/cran.scm (r-seurat): Update to 3.2.1.
[propagated-inputs]: Remove r-ape; add r-matrixstats.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
e6711231ed
gnu: r-rfast: Update to 2.0.1. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.1.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
0982ffa898
gnu: r-scatterpie: Update to 0.1.5. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
df2210be8b
gnu: r-forecast: Update to 8.13. 
* gnu/packages/cran.scm (r-forecast): Update to 8.13.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
ad10a45225
gnu: r-gamlss: Update to 5.2-0. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.2-0.
 2020-09-14 19:07:47 +02:00