gnu: r-scran: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-scran): Move from here... * gnu/packages/bioconductor.scm (r-scran): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -8347,6 +8347,49 @@ routines.")
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objects from the @code{graph} package.")
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(license license:epl1.0)))
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(define-public r-scran
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(package
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(name "r-scran")
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(version "1.16.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "scran" version))
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(sha256
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(base32
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"1gm4ys4aq8h1pn45k1rxk384wjyf55izivw8kgxbrflj6j4xvvsv"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-beachmat" ,r-beachmat)
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("r-bh" ,r-bh)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocneighbors" ,r-biocneighbors)
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("r-biocparallel" ,r-biocparallel)
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("r-biocsingular" ,r-biocsingular)
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("r-delayedarray" ,r-delayedarray)
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("r-delayedmatrixstats" ,r-delayedmatrixstats)
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("r-dqrng" ,r-dqrng)
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("r-edger" ,r-edger)
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("r-igraph" ,r-igraph)
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("r-iranges" ,r-iranges)
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("r-limma" ,r-limma)
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("r-matrix" ,r-matrix)
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("r-rcpp" ,r-rcpp)
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("r-s4vectors" ,r-s4vectors)
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("r-scater" ,r-scater)
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("r-singlecellexperiment" ,r-singlecellexperiment)
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("r-statmod" ,r-statmod)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/scran")
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(synopsis "Methods for single-cell RNA-Seq data analysis")
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(description "This package implements a variety of low-level analyses of
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single-cell RNA-seq data. Methods are provided for normalization of
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cell-specific biases, assignment of cell cycle phase, and detection of highly
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variable and significantly correlated genes.")
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(license license:gpl3)))
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(define-public r-delayedmatrixstats
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(package
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(name "r-delayedmatrixstats")
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@ -10857,49 +10857,6 @@ various analyses of single-cell RNA-seq gene expression data, with a focus on
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quality control.")
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(license license:gpl2+)))
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(define-public r-scran
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(package
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(name "r-scran")
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(version "1.16.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "scran" version))
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(sha256
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(base32
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"1gm4ys4aq8h1pn45k1rxk384wjyf55izivw8kgxbrflj6j4xvvsv"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-beachmat" ,r-beachmat)
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("r-bh" ,r-bh)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocneighbors" ,r-biocneighbors)
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("r-biocparallel" ,r-biocparallel)
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("r-biocsingular" ,r-biocsingular)
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("r-delayedarray" ,r-delayedarray)
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("r-delayedmatrixstats" ,r-delayedmatrixstats)
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("r-dqrng" ,r-dqrng)
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("r-edger" ,r-edger)
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("r-igraph" ,r-igraph)
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("r-iranges" ,r-iranges)
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("r-limma" ,r-limma)
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("r-matrix" ,r-matrix)
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("r-rcpp" ,r-rcpp)
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("r-s4vectors" ,r-s4vectors)
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("r-scater" ,r-scater)
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("r-singlecellexperiment" ,r-singlecellexperiment)
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("r-statmod" ,r-statmod)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/scran")
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(synopsis "Methods for single-cell RNA-Seq data analysis")
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(description "This package implements a variety of low-level analyses of
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single-cell RNA-seq data. Methods are provided for normalization of
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cell-specific biases, assignment of cell cycle phase, and detection of highly
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variable and significantly correlated genes.")
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(license license:gpl3)))
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(define-public r-dropbead
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(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
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(revision "2"))
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