futurile/guix-play
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

gnu: r-scran: Move to (gnu packages bioconductor).

Browse Source 
* gnu/packages/bioinformatics.scm (r-scran): Move from here...
* gnu/packages/bioconductor.scm (r-scran): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
zimoun 2020-09-14 18:07:40 +02:00 committed by Ricardo Wurmus
parent 8c7c6db408
commit 1193b77e60
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
2 changed files with 43 additions and 43 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

43
gnu/packages/bioconductor.scm
View File

@ -8347,6 +8347,49 @@ routines.")
objects from the @code{graph} package.")
(license license:epl1.0)))
(define-public r-scran
(package
(name "r-scran")
(version "1.16.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scran" version))
(sha256
(base32
"1gm4ys4aq8h1pn45k1rxk384wjyf55izivw8kgxbrflj6j4xvvsv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-beachmat" ,r-beachmat)
("r-bh" ,r-bh)
("r-biocgenerics" ,r-biocgenerics)
("r-biocneighbors" ,r-biocneighbors)
("r-biocparallel" ,r-biocparallel)
("r-biocsingular" ,r-biocsingular)
("r-delayedarray" ,r-delayedarray)
("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-dqrng" ,r-dqrng)
("r-edger" ,r-edger)
("r-igraph" ,r-igraph)
("r-iranges" ,r-iranges)
("r-limma" ,r-limma)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-s4vectors" ,r-s4vectors)
("r-scater" ,r-scater)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-statmod" ,r-statmod)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/scran")
(synopsis "Methods for single-cell RNA-Seq data analysis")
(description "This package implements a variety of low-level analyses of
single-cell RNA-seq data. Methods are provided for normalization of
cell-specific biases, assignment of cell cycle phase, and detection of highly
variable and significantly correlated genes.")
(license license:gpl3)))
(define-public r-delayedmatrixstats
(package
(name "r-delayedmatrixstats")

43
gnu/packages/bioinformatics.scm
View File

@ -10857,49 +10857,6 @@ various analyses of single-cell RNA-seq gene expression data, with a focus on
quality control.")
(license license:gpl2+)))
(define-public r-scran
(package
(name "r-scran")
(version "1.16.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scran" version))
(sha256
(base32
"1gm4ys4aq8h1pn45k1rxk384wjyf55izivw8kgxbrflj6j4xvvsv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-beachmat" ,r-beachmat)
("r-bh" ,r-bh)
("r-biocgenerics" ,r-biocgenerics)
("r-biocneighbors" ,r-biocneighbors)
("r-biocparallel" ,r-biocparallel)
("r-biocsingular" ,r-biocsingular)
("r-delayedarray" ,r-delayedarray)
("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-dqrng" ,r-dqrng)
("r-edger" ,r-edger)
("r-igraph" ,r-igraph)
("r-iranges" ,r-iranges)
("r-limma" ,r-limma)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-s4vectors" ,r-s4vectors)
("r-scater" ,r-scater)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-statmod" ,r-statmod)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/scran")
(synopsis "Methods for single-cell RNA-Seq data analysis")
(description "This package implements a variety of low-level analyses of
single-cell RNA-seq data. Methods are provided for normalization of
cell-specific biases, assignment of cell cycle phase, and detection of highly
variable and significantly correlated genes.")
(license license:gpl3)))
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))