* gnu/packages/emacs.scm (emacs-ess): Update to 17.11
[url]: Use github for https
[snippet]: update julia-mode substitution, only build info doc, bypass failing test
[propagated-inputs]: Add emacs-julia-mode
[description]: Mention that ESS supports Julia and JAGS (which replaces OpenBUGS)
[arguments]: Remove 'set-home' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Fixes <https://bugs.gnu.org/32652>.
* gnu/system/vm.scm (operating-system-uuid)[service-name,
file-system-digest]: New procedures.
Map these over services and file systems and hash the result.
* tests/guix-system.sh: Add test.
Reported by Paul Garlick <pgarlick@tourbillion-technology.com>.
Fixes a bug whereby "old" Guix instances (before mid-May 2018) would
fail to pull to current master.
Specifically, Paul reported being unable to upgrade from
6f84dc4314cd84550d9fc7e7afa11c495edc45a5 (a commit that predates that
addition of the 'bootstrap' phase on gnu-build-system on 'master' and
that also predates the new 'guix pull'.)
* build-aux/build-self.scm (guile-gcrypt)[arguments]: New field.
Reported by Alex Vong <alexvong1995@gmail.com>.
* config-daemon.ac: Do not add "-L$LIBGCRYPT_LIBDIR" to LIBGCRYPT_LIBS
when "$LIBGCRYPT_LIBDIR" is empty.
* gnu/packages/web.scm (hpcguix-web): Update to 9ff40fc.
[arguments]: In 'wrap-program' phase, add guile-gcrypt, guile-git, and
guile-bytestructures to DEPS.
* gnu/packages/guile.scm (guile-commonmark)[source](snippet): Change the
"modir = " and "godir = " line separately, allowing .go files to be
installed to $(libdir).
This is a follow-up to commit 5dfe491290b14a1ee7efd70f9cd083969c24e1c2.
Sorry!
* gnu/packages/bioinformatics.scm, gnu/packages/graph.scm: Use (gnu packages
bioconductor).
Fixes <https://bugs.gnu.org/32618>.
Reported by Eric Brown <brown@fastmail.com>.
* guix/git.scm (update-cached-checkout): Remove "origin/" from default
REF. Define CANONICAL-REF and use it instead of REF.
(latest-repository-commit): Remove "origin/" from default REF.
* guix/channels.scm (%default-channels): Remove "origin/" from
'branch'.
This fixes a regression introduced in
ca719424455465fca4b872c371daf2a46de88b33 whereby external channels would
fail to build due to the lack of (gcrypt …) modules.
* guix/channels.scm (channel-instance-derivations): Add 'guile-gcrypt'.
Pass it along CORE to 'build-channel-instance'.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
