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59349 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
adbcc3ed8c
gnu: lcov: Update to 1.15. 
* gnu/packages/code.scm (lcov): Update to 1.15.
[source]: Use a release tarball.
[inputs]: Replace perl-perlio-gzip with perl-io-compress.
 2020-09-23 04:36:36 +02:00
Tobias Geerinckx-Rice
bfc0a2ffa8
gnu: cloc: Update to 1.88. 
* gnu/packages/code.scm (cloc): Update to 1.88.
 2020-09-23 04:36:35 +02:00
Tobias Geerinckx-Rice
dd492cb853
gnu: facter: Update to 4.0.38. 
* gnu/packages/admin.scm (facter): Update to 4.0.38.
 2020-09-23 04:36:34 +02:00
Efraim Flashner
e06eeaa4ca
gnu: python-sympy: Update check phase. 
* gnu/packages/python-xyz.scm (python-sympy)[arguments]: Replace 'check
phase instead of deleting it and adding it back in.
 2020-09-22 23:00:40 +03:00
Greg Hogan
8621ff6bd5
gnu: python-sympy: Update to 1.6.2. 
* gnu/packages/python-xyz.scm (python-sympy): Update to 1.6.2.
[source]: Download from pypi.
[arguments]: Make check phase inheritable by python2-sympy.
(python2-sympy): Update to 1.5.1.
[source]: Download from pypi.
[arguments]: Inherit from python-sympy.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-22 22:41:58 +03:00
Greg Hogan
bd1bce0896
gnu: python-mpmath: Update to 1.1.0. 
* gnu/packages/python-xyz.scm (python-mpmath): Update to 1.1.0.
[source]: Download from pypi.
[native-inputs]: Add pytest.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-22 22:39:39 +03:00
Pierre Langlois
d3456739c5
gnu: samba: Fix fcntl hint detection in configure script. 
The configure script generates a C program to detect support for
lifetime hints on files.  But this program could crash, potentially
leaving a stale unreadable file behind which could cause the
patch-generated-file-shebang phase to fail.

Reported upstream <https://bugzilla.samba.org/show_bug.cgi?id=14503>.

* gnu/packages/patches/patches/samba-fix-fcntl-hint-detection.patch: New
file.
* gnu/packages/samba.scm (samba)[origin]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
 2020-09-22 19:52:07 +01:00
Marius Bakke
a2c0dbb84a
gnu: python-hyperkitty: Enable previously failing test. 
* gnu/packages/mail.scm (python-hyperkitty)[arguments]: Remove substitution.
 2020-09-22 18:42:00 +02:00
Marius Bakke
37c24c0bd0
gnu: patchwork: Update to 2.2.2. 
* gnu/packages/patchutils.scm (patchwork): Update to 2.2.2.
[arguments]: Remove references to 'pwclient' which is now distributed
separately.
 2020-09-22 18:42:00 +02:00
Marius Bakke
5ec1feca99
gnu: python-mysqlclient: Update to 2.0.1. 
* gnu/packages/databases.scm (python-mysqlclient): Update to 2.0.1.
 2020-09-22 18:42:00 +02:00
Marius Bakke
eec6a694a7
gnu: python-mysqlclient: Remove unused inputs. 
* gnu/packages/databases.scm (python-mysqlclient)[native-inputs]: Remove.
[inputs]: Remove ZLIB and OPENSSL.
[arguments]: Explicitly set #:tests? as it was a no-op before.
 2020-09-22 18:41:59 +02:00
Marius Bakke
1e609d632d
gnu: Remove python2-mysqlclient. 
Later versions do not work with Python 2.

* gnu/packages/databases.scm (python2-mysqlclient): Remove variable.
 2020-09-22 18:41:59 +02:00
Marius Bakke
94e7335e90
gnu: python2-graphite-web: Update to 1.1.7. 
* gnu/packages/monitoring.scm (python2-graphite-web): Rename to ...
(graphite-web): ... this.  Update to 1.1.7.
[arguments]: Add #:tests?.  Adjust setup.py substitution.
[propagated-inputs]: Use the Python 3 versions of all inputs.  Use
PYTHON-DJANGO-2.2 instead of PYTHON-DJANGO.
[home-page]: Use HTTPS.
(python2-graphite-web): Deprecate variable.
 2020-09-22 18:41:59 +02:00
Marius Bakke
d7922f488b
gnu: Django packages no longer propagate Django. 
This makes them easier to use with different versions of Django.

(python-django-classy-tags, python-django-debug-toolbar-alchemy,
python-django-jinja, python-django-bulk-update,
python-djangorestframework)[propagated-inputs]: Remove PYTHON-DJANGO.
(python-django-contrib-comments)[propagated-inputs]: Likewise.  Add
PYTHON-SIX.
[native-inputs]: Add PYTHON-DJANGO.
* gnu/packages/django.scm (python-django-extensions,
python-django-simple-math-captcha, python-django-taggit,
python-easy-thumbnails, python-django-haystack, python-django-allauth,
python-django-debug-toolbar, python-django-assets, python-django-picklefield,
python-django-contact-form), python-django-pipeline, python-django-redis,
python-django-rq, python-django-q, python-django-sortedm2m,
python-django-appconf, python-django-statici18n, python-django-sekizai,
python-django-crispy-forms, python-django-override-storage,
python-django-auth-ldap, python-django-logging-json, python-django-netfields,
python-django-url-filter)[propagated-inputs]: Move PYTHON-DJANGO ...
[native-inputs]: ... here.
 2020-09-22 18:41:59 +02:00
Marius Bakke
18eea4499f
gnu: Remove python-django-overextends. 
This package does not work with newer versions of Django and its functionality
has been superseded by a built-in extends module.

* gnu/packages/django.scm (python-django-overextends): Remove variable.
 2020-09-22 18:41:59 +02:00
Marius Bakke
4f1b919156
gnu: Add python-django-url-filter. 
* gnu/packages/django.scm (python-django-url-filter): New public variable.
 2020-09-22 18:41:59 +02:00
Marius Bakke
5bbc98a35d
gnu: Add python-django-debug-toolbar-alchemy. 
* gnu/packages/django.scm (python-django-debug-toolbar-alchemy): New public
variable.
 2020-09-22 18:41:59 +02:00
Marius Bakke
28e997e88b
gnu: Add python-jsonplus. 
* gnu/packages/python-xyz.scm (python-jsonplus): New public variable.
 2020-09-22 18:41:58 +02:00
Marius Bakke
de84d3b1e2
gnu: Add python-sqlalchemy-mock. 
* gnu/packages/databases.scm (python-alchemy-mock): New public variable.
 2020-09-22 18:41:58 +02:00
Marius Bakke
cc62ab592f
gnu: Add python-django-netfields. 
* gnu/packages/django.scm (python-django-netfields): New public variable.
 2020-09-22 18:41:58 +02:00
Marius Bakke
c96bc57a1e
gnu: Add python-django-logging-json. 
* gnu/packages/django.scm (python-django-logging-json): New public variable.
 2020-09-22 18:41:58 +02:00
Marius Bakke
44272f2d7b
gnu: Add python-django-auth-ldap. 
* gnu/packages/django.scm (python-django-auth-ldap): New public variable.
 2020-09-22 18:41:58 +02:00
Marius Bakke
758fb0478e
gnu: python-ldap: Update to 3.3.1. 
* gnu/packages/openldap.scm (python-ldap): Update to 3.3.1.
 2020-09-22 18:41:58 +02:00
Marius Bakke
6673d1b58b
gnu: Deprecate python-django-jsonfield. 
* gnu/packages/django.scm (python-django-jsonfield): Rewrite in terms of
DEPRECATED-PACKAGE with PYTHON-DJANGO as the replacement.
 2020-09-22 18:41:57 +02:00
Marius Bakke
87f067657e
gnu: Remove python2 versions of Django packages. 
Python 2 is EOL and not supported by current versions of Django.

* gnu/packages/django.scm (python-django, python-django-tagging)[properties]:
Remove PYTHON2-VARIANT.
* gnu/packages/django.scm (python2-django, python2-django-simple-math-captcha,
python2-pytest-django, python2-django-filter, python2-django-allauth,
python2-django-gravatar2, python2-django-assets, python2-django-jsonfield,
python2-dj-database-url, python2-django-bulk-update,
python2-django-contact-form, python2-django-contrib-comments,
python2-django-overextends, python2-django-redis, python2-django-rq,
python2-django-sortedm2m, python2-django-appconf, python2-django-statici18n,
python2-django-tagging): Remove variables.
 2020-09-22 18:41:57 +02:00
Marius Bakke
e06e250d48
gnu: python-django-override-storage: Update to 0.3.0. 
* gnu/packages/django.scm (python-django-override-storage): Update to 0.3.0.
[source]: Switch to GIT-FETCH.
[arguments]: New field.
[native-inputs]: Add PYTHON-MOCK.
 2020-09-22 18:41:57 +02:00
Marius Bakke
c59554458c
gnu: python-django-sekizai: Update to 2.0.0. 
* gnu/packages/django.scm (python-django-sekizai): Update to 2.0.0.
 2020-09-22 18:41:57 +02:00
Marius Bakke
dfbe9d2327
gnu: python-django-statici18n: Update to 1.9.0. 
* gnu/packages/django.scm (python-django-statici18n): Update to 1.9.0.
[source]: Switch to GIT-FETCH.
[arguments]: New field.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-DJANGO.
 2020-09-22 18:41:57 +02:00
Marius Bakke
7e244ac663
gnu: python-django-appconf: Update to 1.0.4. 
* gnu/packages/django.scm (python-django-appconf): Update to 1.0.4.
[arguments]: New field.
[propagated-inputs]: Remove PYTHON-SIX.
 2020-09-22 18:41:57 +02:00
Marius Bakke
52c8d4204c
gnu: python-django-sortedm2m: Update to 3.0.2. 
* gnu/packages/django.scm (python-django-sortedm2m): Update to 3.0.2.
[arguments]: Remove #:tests?.  Add #:phases.
[home-page]: Update to current.
 2020-09-22 18:41:57 +02:00
Marius Bakke
27f32604d4
gnu: python-django-q: Update to 1.3.3. 
* gnu/packages/django.scm (python-django-q): Update to 1.3.3.
[arguments]: Add #:tests?.  Remove #:phases.
[native-inputs]: Remove.
 2020-09-22 18:41:56 +02:00
Marius Bakke
da6448cda5
gnu: python-django-rq: Update to 2.3.2. 
* gnu/packages/django.scm (python-django-rq): Update to 2.3.2.
[native-inputs]: Add PYTHON-DJANGO-REDIS, PYTHON-MOCK, and PYTHON-RQ-SCHEDULER.
 2020-09-22 18:41:56 +02:00
Marius Bakke
8a88efce4c
gnu: Add python-rq-scheduler. 
* gnu/packages/databases.scm (python-rq-scheduler): New public variable.
 2020-09-22 18:41:56 +02:00
Marius Bakke
8c9365047b
gnu: Add python-croniter. 
* gnu/packages/python-xyz.scm (python-croniter): New public variable.
 2020-09-22 18:41:56 +02:00
Marius Bakke
b462caaf93
gnu: python-rq: Update to 1.5.1. 
* gnu/packages/databases.scm (python-rq): Update to 1.5.1.
[source]: Change to GIT-FETCH.
[arguments]: New field.
[native-inputs]: Add PYTHON-MOCK, PYTHON-PYTEST, and REDIS.
 2020-09-22 18:41:56 +02:00
Marius Bakke
d87252e633
gnu: python-redis: Update to 3.5.3. 
* gnu/packages/databases.scm (python-redis): Update to 3.5.3.
 2020-09-22 18:41:56 +02:00
Marius Bakke
924be573a9
gnu: python-django-redis: Update to 4.12.1. 
* gnu/packages/django.scm (python-django-redis): Update to 4.12.1.
 2020-09-22 18:41:55 +02:00
Marius Bakke
380b84f2ef
gnu: python-django-contrib-comments: Update to 1.9.2. 
* gnu/packages/django.scm (python-django-contrib-comments): Update to 1.9.2.
 2020-09-22 18:41:55 +02:00
Marius Bakke
3be81c85cf
gnu: python-django-contact-form: Update to 1.8.1. 
* gnu/packages/django.scm (python-django-contact-form): Update to 1.8.1.
[arguments]: Adjust test invokation, drop flake8 checks.
[native-inputs]: Remove PYTHON-FLAKE8.
 2020-09-22 18:41:55 +02:00
Marius Bakke
074400543d
gnu: python-django-bulk-update: Update to 2.2.0. 
* gnu/packages/django.scm (python-django-bulk-update): Update to 2.2.0.
[native-inputs]: Remove.
 2020-09-22 18:41:55 +02:00
Marius Bakke
bfe8c030e4
gnu: python-django-picklefield: Update to 3.0.1. 
* gnu/packages/django.scm (python-django-picklefield): Update to 3.0.1.
[source]: Switch to GIT-FETCH.
[arguments]: New field.
[native-inputs]: Remove.
 2020-09-22 18:41:55 +02:00
Marius Bakke
76cd38f12e
gnu: python-dj-database-url: Update to 0.5.0. 
* gnu/packages/django.scm (python-dj-database-url): Update to 0.5.0.
 2020-09-22 18:41:55 +02:00
Marius Bakke
357ab65bae
gnu: python-django-assets: Update to 2.0. 
* gnu/packages/django.scm (python-django-assets): Update to 2.0.
[arguments]: Remove.
 2020-09-22 18:41:55 +02:00
Marius Bakke
e2ac59f984
gnu: python-webassets: Update to 2.0. 
* gnu/packages/python-web.scm (python-webassets): Update to 2.0.
[arguments]: New field.
 2020-09-22 18:41:54 +02:00
Marius Bakke
384aa00c7d
gnu: python-django-gravatar2: Update to 1.4.4. 
* gnu/packages/django.scm (python-django-gravatar2): Update to 1.4.4.
 2020-09-22 18:41:54 +02:00
Marius Bakke
5495e880a6
gnu: python-django-debug-toolbar: Update to 2.2. 
* gnu/packages/django.scm (python-django-debug-toolbar): Update to 2.2.
 2020-09-22 18:41:54 +02:00
Marius Bakke
bc13610148
gnu: python-django-jinja: Update to 2.6.0. 
* gnu/packages/django.scm (python-django-jinja): Update to 2.6.0.
 2020-09-22 18:41:54 +02:00
Marius Bakke
93b5bd7c76
gnu: python-django-pipeline: Update to 2.0.5. 
* gnu/packages/django.scm (python-django-pipeline): Update to 2.0.5.
[propagated-inputs]: Add PYTHON-CSS-HTML-JS-MINIFY.
 2020-09-22 18:41:54 +02:00
Marius Bakke
7f93dc3dae
gnu: Add python-css-html-js-minify. 
* gnu/packages/python-web.scm (python-css-html-js-minify): New public variable.
 2020-09-22 18:41:54 +02:00
Marius Bakke
6c0131b375
gnu: python-django-allauth: Update to 0.42.0. 
* gnu/packages/django.scm (python-django-allauth): Update to 0.42.0.
 2020-09-22 18:41:53 +02:00
Marius Bakke
357f586374
gnu: python-django-filter: Update to 2.3.0. 
* gnu/packages/django.scm (python-django-filter): Update to 2.3.0.
 2020-09-22 18:41:53 +02:00
Marius Bakke
e073925c94
gnu: python-djangorestframework: Update to 3.11.1. 
* gnu/packages/django.scm (python-djangorestframework): Update to 3.11.1.
 2020-09-22 18:41:53 +02:00
Marius Bakke
9e4fef9269
gnu: python-django-crispy-forms: Update to 1.9.2. 
* gnu/packages/django.scm (python-django-crispy-forms): Update to 1.9.2.
 2020-09-22 18:41:53 +02:00
Marius Bakke
9eccb181fa
gnu: python-django-taggit: Update to 1.3.0. 
* gnu/packages/django.scm (python-django-taggit): Update to 1.3.0.
 2020-09-22 18:41:53 +02:00
Marius Bakke
0cac0e0b92
gnu: python-django-extensions: Update to 3.0.6. 
* gnu/packages/django.scm (python-django-extensions): Update to 3.0.6.
 2020-09-22 18:41:53 +02:00
Marius Bakke
1fe17bc361
gnu: python-django-classy-tags: Update to 2.0.0. 
* gnu/packages/django.scm (python-django-classy-tags): Update to 2.0.0.
[propagated-inputs]: Remove PYTHON-SIX.
 2020-09-22 18:41:53 +02:00
Marius Bakke
9fb6275e0b
gnu: python-django-simple-math-captcha: Update to 1.0.9. 
* gnu/packages/django.scm (python-django-simple-math-captcha): Update to 1.0.9.
[source]: Change to GIT-FETCH.
[arguments]: Remove #:tests?.  Add phases to patch imports and run tests.
[native-inputs]: Add PYTHON-MOCK.
[propagated-inputs]: Add PYTHON-SIX.
 2020-09-22 18:41:52 +02:00
Marius Bakke
92607967c2
gnu: python-pytest-django: Update to 3.10.0. 
* gnu/packages/django.scm (python-pytest-django): Update to 3.10.0.
[arguments]: Remove #:tests?.  Override check phase.
[native-inputs]: Add PYTHON-PYTEST-XDIST.
 2020-09-22 18:41:52 +02:00
Marius Bakke
60c964ab75
gnu: python-django: Propagate python-sqlparse. 
* gnu/packages/django.scm (python-django)[native-inputs]: Move PYTHON-SQLPARSE ...
[propagated-inputs]: ... here.
 2020-09-22 18:41:52 +02:00
Marius Bakke
ac3103e8f3
gnu: python-django: Update to 3.1.1. 
* gnu/packages/django.scm (python-django): Update to 3.1.1.
[arguments]: Remove #:modules.  Rename set-tzdir phase to pre-check, and
disable one test.  Adjust PYTHONPATH patching to preserve all entries.  Ensure
the test suite runs sequentially.
[propagated-inputs]: Add PYTHON-ASGIREF.
(python-django-2.2): New public variable.
* gnu/packages/mail.scm (python-hyperkitty)[propagated-inptus]: Change from
PYTHON-DJANGO to PYTHON-DJANGO-2.2.
* gnu/packages/patchutils.scm (patchwork)[propagated-inputs]: Likewise.
 2020-09-22 18:41:52 +02:00
Marius Bakke
b2eafc7d8d
gnu: Add python-asgiref. 
* gnu/packages/python-web.scm (python-asgiref): New public variable.
 2020-09-22 18:41:52 +02:00
Marius Bakke
23f6796880
gnu: Remove python2-django-mailman3. 
This package depends on Python 2 which is past end-of-life and not supported
by newer versions of Django.

* gnu/packages/mail.scm (python2-django-mailman3): Remove variable.
(python-django-mailman3)[properties]: Remove.
 2020-09-22 18:41:52 +02:00
Marius Bakke
49150e8a00
gnu: Remove pootle. 
This package depends on Python 2 which is past end-of-life and not supported
by newer versions of some of the dependencies.

* gnu/packages/django.scm (pootle): Remove variable.
 2020-09-22 18:41:51 +02:00
Marius Bakke
a13b522078
gnu: python-uritemplate: Update to 3.0.1. 
* gnu/packages/python-web.scm (python-uritemplate): Update to 3.0.1.
 2020-09-22 18:41:51 +02:00
Mark H Weaver
c7011ff850
gnu: icecat: Update to 78.3.0-guix0-preview1 [security-fixes]. 
Includes fixes for CVE-2020-15673, CVE-2020-15676, CVE-2020-15677, and
CVE-2020-15678.

* gnu/packages/gnuzilla.scm (mozilla-compare-locales): Update to
RELEASE_8_0_0.
(all-mozilla-locales): Update to newer versions.
(mozilla-patch): Remove vestigial procedure.
(%icecat-version, %icecat-build-id): Update to 78.3.0-guix0-preview1.
(icecat-source): Update 'upstream-icecat-base-version', 'gnuzilla-commit', and
hashes.  Reverse order of makeicecat-patch and gnuzilla-fixes-patch.
(icecat)[inputs]: Remove libogg, libvorbis, libvpx, icu4c, sqlite,
startup-notification, and zlib.  Add several "UNBUNDLE-ME!" comments.
[native-inputs]: Update 'rust' and 'cargo' dependencies to version 1.41.
Update 'rust-cbindgen' dependency to version 0.14.  Update 'node' dependency
to 10.22.
[arguments]<configure-flags>: Change --enable-default-toolkit value to
"cairo-gtk3-wayland".  Change --with-unsigned-addon-scopes value to
"app,system".  Add "--allow-addon-sideload".  Remove
"--enable-startup-notification" and "--disable-gconf".  Comment out
"--with-system-zlib", "--with-system-bz2", and "--with-system-icu".
<phases>: In the 'remove-bundled-libaries' phase, remove "modules/zlib" from
the list of directories to delete.  Update the 'patch-cargo-checksums' phase
to update more modules.
(mozilla-68-compare-locales, all-mozilla-68-locales, %icecat-68-version)
(icecat-68-source): New variables preserving the previous icecat 68 source.
(icedove)[source]: Use 'icecat-68-source'.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt to IceCat 78.
* gnu/packages/patches/icecat-68-makeicecat.patch: New file containing
the previous 'icecat-makeicecat.patch'.
* gnu/local.mk: Add 'icecat-68-makeicecat.patch'.
 2020-09-22 11:32:12 -04:00
Pierre Neidhardt
ce642b8f06
gnu: sbcl-cl-webkit: Update to 20200922. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20200922.
 2020-09-22 16:59:09 +02:00
Efraim Flashner
3fef44ed6c
Revert "gnu: texlive-latex-psnfss: Ensure that font definition files are installed." 
This reverts commit fdd066833e.

This commit causes over 4000 package rebuilds.
 2020-09-22 16:30:25 +03:00
Paul Garlick
fdd066833e
gnu: texlive-latex-psnfss: Ensure that font definition files are installed. 
* gnu/packages/tex.scm (texlive-latex-psnfss): Use
simple-texlive-package to install font definition files and
documentation.
 2020-09-22 12:58:26 +01:00
Jesse Dowell
0b21bf6245
gnu: Add emacs-html-to-hiccup. 
* gnu/packages/emacs-xyz.scm (emacs-html-to-hiccup): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-09-22 11:47:10 +02:00
Nicolas Goaziou
d27ec8db70
gnu: mafft: Use HTTPS home page URI. 
* gnu/packages/bioinformatics.scm (mafft)[home-page, license]: Use HTTPS URI.
 2020-09-22 11:12:52 +02:00
Simon South
a87d1f337d
gnu: emacs-elpher: Update to 2.10.2. 
* gnu/packages/emacs-xyz.scm (emacs-elpher): Update to 2.10.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-09-22 11:01:11 +02:00
Michael Rohleder
9485a2e5c6
gnu: emacs-shx: Update to 1.5.0. 
* gnu/packages/emacs-xyz.scm (emacs-shx): Update to 1.5.0.
[arguments]: Removed unneeded modify-phases.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-22 10:57:08 +02:00
Vinicius Monego
1f2076757a
gnu: Add blanket. 
* gnu/packages/task-management.scm (blanket): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-22 10:57:08 +02:00
Michael Rohleder
69a5738796
gnu: mkvtoolnix: Update to 50.0.0. 
* gnu/packages/video.scm (mkvtoolnix): Update to 50.0.0.
[inputs]: Add pcre2.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-22 10:57:08 +02:00
Michael Rohleder
b655f34eb4
gnu: emacs-lice-el: Update to 0.2-2.482e58a. 
[[PGP Signed Part:No public key for 7C7AFFBEFEF2CB25 created at 2020-09-17T19:44:34+0200 using RSA]]
Here is a rebased (to current master) patch.

> From bc2163d6da160b58591f77f352cf4ea8543454e2 Mon Sep 17 00:00:00 2001
From: Michael Rohleder <mike@rohleder.de>
Date: Sun, 6 Sep 2020 11:30:57 +0200
Subject: [PATCH] gnu: emacs-lice-el: Update to 0.2-2.482e58a.

* gnu/packages/emacs-xyz.scm (emacs-lice-el): Update to 0.2-2.482e58a.
[arguments]: Add phase 'patch-template-directory and 'install-templates.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-09-22 10:54:26 +02:00
Efraim Flashner
9ad3c86fe5
gnu: rust-owning-ref-0.4: Update to 0.4.1. 
* gnu/packages/crates-io.scm (rust-owning-ref-0.4): Update to 0.4.1.
 2020-09-22 11:35:21 +03:00
Efraim Flashner
1ee22f1053
gnu: Add rust-scopeguard-1. 
* gnu/packages/crates-io.scm (rust-scopeguard-1): New variable.
(rust-scopeguard-1.0): Inherit from rust-scopeguard-1.
 2020-09-22 11:32:13 +03:00
Efraim Flashner
50de4bfe20
gnu: Add rust-cloudabi-0.1. 
* gnu/packages/crates-io.scm (rust-cloudabi-0.1): New variable.
(rust-cloudabi-0.0): Inherit from rust-cloudabi-0.1.
 2020-09-22 11:30:15 +03:00
Efraim Flashner
6366e7cac5
gnu: Add rust-gettext-rs-0.5. 
* gnu/packages/crates-io.scm (rust-gettext-rs-0.5): New variable.
(rust-gettext-rs-0.4): Inherit from rust-gettext-rs-0.5.
 2020-09-22 11:13:14 +03:00
Konrad Hinsen
d076ddc560
gnu: Add python-citeproc-py. 
* gnu/packages/python-xyz.scm (python-citeproc-py): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-21 23:30:53 +02:00
Konrad Hinsen
de8cc74749
gnu: Add python-rnc2rng. 
* gnu/packages/python-xyz.scm (python-rnc2rng): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-21 23:30:43 +02:00
zimoun
74cb33c228
gnu: gdsl: Replace 'url-fetch' by 'git-fetch'. 
Fixes <https://debbugs.gnu.org/25913>.

* gnu/packages/datastructures.scm (gdsl)[source]: Replace 'url-fetch' by
'git-fetch'.
[home-page]: Update.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-21 23:12:45 +02:00
Pierre Langlois
a2b25890ee
gnu: samba: Update to 4.12.7 [security fixes]. 
Fixes CVE-2020-1472 with 4.12.7.
Fixes CVE-2020-10730, CVE-2020-10745, CVE-2020-10760 and CVE-2020-14303
with 4.12.4.

* gnu/packages/samba.org (samba): Update to 4.12.7.
 2020-09-21 20:45:44 +01:00
Brendan Tildesley
1b8be80e5f
gnu: metapixel: Fix typo in description. 
*  gnu/packages/image-processing.scm (metapixel)[description]: Fix typo.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-21 22:37:54 +03:00
Tobias Geerinckx-Rice
635bf73d2f
gnu: sudo: Update to 1.9.3. 
* gnu/packages/admin.scm (sudo): Update to 1.9.3.
 2020-09-21 20:35:49 +02:00
Boris A. Dekshteyn
17d30d1f6e
gnu: inkscape-1.0: Update to 1.0.1. 
* gnu/packages/inkscape.scm (inkscape-1.0): Update to 1.0.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-21 19:39:25 +03:00
Tobias Geerinckx-Rice
f23e439f9f
gnu: php: Disable unreliable test. 
* gnu/packages/php.scm (php)[arguments]: Delete bug73837.phpt.
 2020-09-21 15:24:07 +02:00
Efraim Flashner
e04b90607a
services: Docker: Fix typo in configuration. 
This is a follow-up to f0a09310e6.

* gnu/services/docker.scm (docker-shepherd-service): Properly reference
variables in service definition.
 2020-09-21 15:04:14 +03:00
Paul Garlick
475e3768fc
gnu: Add texlive-caption. 
* gnu/packages/tex.scm (texlive-caption): New variable.
 2020-09-21 12:47:24 +01:00
Jesse Dowell
90492a9f13
gnu: docker: Compile with seccomp enabled. 
* gnu/packages/docker.scm (docker)[arguments]: Adjust custom 'configure
phase to enable seccomp support.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-21 13:18:25 +03:00
Jesse Dowell
f0a09310e6
services: docker: Fix enable-proxy? option. 
The userland proxy option does not properly disable the userland proxy when
set to false. Docker defaults to enabling the userland proxy if the option is
unset on the command line.

* gnu/services/docker.scm (docker-shepherd-service): Properly handle the
'enable-proxy?' option.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-21 13:18:25 +03:00
Jesse Dowell
87a13a5e30
gnu: docker: Synchronize docker dependencies with the current version of docker. 
* gnu/packages/docker.scm (docker-libnetwork): Update to 19.03-1.026aaba.
[source]: Follow URI redirection.
[arguments]: Adjust import-path accordingly.
[home-page]: Same.
* gnu/packages/networking.scm (go-sctp): Update to 0.0.0-2.6e2cb13.
[arguments]: Skip test suite.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-21 13:18:24 +03:00
Paul Garlick
921fad1a5a
gnu: texlive-microtype: Tweak description. 
* gnu/packages/tex.scm (texlive-microtype)[description]: Fill paragraph
to standard width.
 2020-09-21 11:14:51 +01:00
Mark H Weaver
e6b6e83490
gnu: webkitgtk: Update to 2.30.0. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.30.0.
[arguments]: Add "-DUSE_SYSTEMD=OFF" to the configure flags.
 2020-09-21 05:05:35 -04:00
Mark H Weaver
42a3db8cb7
gnu: Rename 'v' to 'vlang'. 
* gnu/packages/vlang.scm (v, vlang): Rename 'v' to 'vlang',
keeping 'v' as a deprecated-package.
 2020-09-21 05:05:19 -04:00
Mathieu Othacehe
1a0da8b4f3
services: base: Improve container related comments. 
* gnu/services/base.scm (guix-shepherd-service): Clarify the usage of a
container for guix-daemon.
 2020-09-21 10:48:16 +02:00
Mathieu Othacehe
6453915cf7
build: shepherd: Check for container support. 
Fixes: <https://issues.guix.gnu.org/43533>.

* gnu/build/shepherd.scm (fork+exec-command/container): Check if containers
are supported before joining PID namespaces.
 2020-09-21 10:22:12 +02:00
Efraim Flashner
c515bbae0c
gnu: supertuxkart: Sort inputs alphabetically. 
* gnu/packages/games.scm (supertuxkart)[inputs]: Sort alphabetically.
 2020-09-21 10:01:02 +03:00
Raphaël Mélotte
c1e73d074c
gnu: supertuxkart: Update to 1.2. 
* gnu/packages/games.scm (supertuxkart): Update to 1.2.
[source]: Update snippet, some of the previously bundled libraries are
gone. Also update URL.
[arguments]: Remove unneeded configure flags.
[inputs]: Add sdl2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-21 09:59:32 +03:00
Tobias Geerinckx-Rice
0a38519694
gnu: eschalot: Cross-compile. 
* gnu/packages/crypto.scm (eschalot)[arguments]: Use CC-FOR-TARGET.
 2020-09-21 02:24:40 +02:00
Tobias Geerinckx-Rice
6b6dbff44e
gnu: eschalot: Fix build. 
* gnu/packages/crypto.scm (eschalot)[inputs]: Use openssl-1.0.
 2020-09-21 02:24:40 +02:00
Tobias Geerinckx-Rice
b864ddb690
services: dicod: Reduce irony. 
* gnu/services/dict.scm (dicod-service): Fix docstring typo.
 2020-09-21 00:31:15 +02:00
Tobias Geerinckx-Rice
5e17ae7fbd
installer: Rename RUN-PARTIONING-PAGE. 
* gnu/installer/newt/partition.scm (run-partioning-page): Rename to
run-partitioning-page.  Adjust all callers.
 2020-09-21 00:31:15 +02:00
Tobias Geerinckx-Rice
e1f3788944
installer: Fix docstring typoes. 
* gnu/installer/connman.scm (connman-state, run-locale-page)
(start-swapping, stop-swapping, run-installer-steps): Fix typo in
docstring.
 2020-09-21 00:31:15 +02:00
Efraim Flashner
ae144ec797
gnu: oil: Don't hardcode gcc. 
* gnu/packages/shells.scm (oil)[arguments]: In custom 'configure phase
use cc-for-target instead of hardcoding gcc.
 2020-09-20 23:42:52 +03:00
Ryan Prior
02406d5c51
gnu: oil: Update to 0.8.0. 
* gnu/packages/shells.scm (oil): Update to 0.8.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-20 23:42:52 +03:00
Nicolas Goaziou
fd5cace4c9
gnu: emacs-beginend: Update to 2.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-beginend): Update to 2.2.0.
 2020-09-20 22:38:32 +02:00
Nicolas Goaziou
822c19b920
gnu: emacs-bluetooth: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-bluetooth): Update to 0.2.
 2020-09-20 22:36:15 +02:00
Efraim Flashner
ff7bba573a
gnu: gnu-pw-mgr: Update to 2.7. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.7.
[arguments]: Add new phase to work around /dev/tty not being available
in the build environment.
 2020-09-20 22:34:53 +03:00
Kei Kebreau
5d351adaca
gnu: retux: Update to 1.4.1-1. 
* gnu/packages/games.scm (retux): Add let binding and update to 1.4.1-1.
[version]: Update version string.
[source]: Update URL.
 2020-09-20 13:32:41 -04:00
Tobias Geerinckx-Rice
fb420edd20
gnu: knot-resolver: Update to 5.1.3. 
* gnu/packages/dns.scm (knot-resolver): Update to 5.1.3.
[inputs]: Remove lua5.1-cqueues, lua5.1-filesystem, lua5.1-sec, and
lua5.1-socket.
 2020-09-20 18:34:39 +02:00
Tobias Geerinckx-Rice
84e2853147
gnu: libbpf: Propagate pkg-config Requirements. 
* gnu/packages/linux.scm (libbpf)[inputs]: Rename to, making libelf and
zlib, …
[propagated-inputs]: …this.
 2020-09-20 18:34:39 +02:00
Julien Lepiller
f9a6e3894b
gnu: Add antlr4. 
* gnu/packages/java.scm (antlr4): New variable.
 2020-09-20 13:57:09 +02:00
Julien Lepiller
5d115440c2
gnu: Add java-antlr4-runtime. 
* gnu/packages/java.scm (java-antlr4-runtime): New variable.
* gnu/packages/patches/java-antlr4-Add-standalone-generator.patch: New
file.
* gnu/packages/patches/java-antlr4-fix-code-too-large.java: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
 2020-09-20 13:56:44 +02:00
Julien Lepiller
1d630fe0f6
gnu: Add java-treelayout. 
* gnu/packages/java.scm (java-treelayout): New variable.
 2020-09-20 13:56:37 +02:00
Maxim Cournoyer
4d82e8e5c5
gnu: qemu: Move HTML documentation to the doc output. 
* gnu/packages/virtualization.scm (qemu)[outputs]: Add "doc" output.
[phases]{create-samba-wrapper}: Correctly refer to the outputs keyword
argument.
{move-html-doc}: Add phase.
 2020-09-19 23:22:46 -04:00
Maxim Cournoyer
38197bb509
gnu: qemu: Install the full documentation as an info manual. 
* gnu/packages/patches/qemu-build-info-manual.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
[phases]{install-info}: Remove phase.
{create-samba-wrapper}: Add after 'install.
 2020-09-19 23:22:45 -04:00
Maxim Cournoyer
710fd17ad5
gnu: qemu: Enable parallel tests. 
I've built QEMU 5.1.0 tens of times on a 24 logical core machines, and haven't
encountered a failure.  Tentatively re-enabling parallel tests.

* gnu/packages/virtualization.scm (qemu)[arguments]: Drop the
\#:parallel-tests? #f argument.
[phases]{configure}: Fix indentation.
 2020-09-19 23:22:45 -04:00
Maxim Cournoyer
229091385a
gnu: qemu: Fix indentation. 
* gnu/packages/virtualization.scm (qemu): Fix indentation.
 2020-09-19 23:22:45 -04:00
Maxim Cournoyer
afeed71ae4
gnu: qemu: Disable the bios-tables-test test. 
This works around <https://issues.guix.info/43048>.

* gnu/packages/virtualization.scm (qemu)[phases]{disable-unusable-tests}: Move
after unpack.  Combine the existing substitute patterns on a single usage of
substitute*.  Disable the bios-tables-test test in
tests/qtest/Makefile.include.
 2020-09-19 23:22:45 -04:00
Maxim Cournoyer
d5d80a62b7
gnu: qemu: Update to 5.1.0. 
* gnu/packages/virtualization.scm (qemu): Update to 5.1.0.
 2020-09-19 23:22:45 -04:00
Danny Milosavljevic
6b1253718d
gnu: u-boot: Reomve sdl2 dependency on non-GUI builds. 
* gnu/packages/bootloaders.scm (u-boot)[native-inputs]: Remove sdl2.
(u-boot-tools)[native-inputs]: Add sdl2.
 2020-09-19 23:02:51 +02:00
Alexandros Theodotou
1bc5a77f0a
gnu: Add surge-synth. 
* gnu/packages/music.scm (surge-synth): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-19 22:52:37 +02:00
Joseph LaFreniere
cfcccc8a2a
gnu: Add emacs-standard-dirs. 
* gnu/packages/emacs-xyz.scm (emacs-standard-dirs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-19 22:52:37 +02:00
Mathieu Othacehe
0996fcc657
system: image: Rename ISO9660 files. 
* gnu/system/image.scm (system-iso9660-image): Change the default file output
name to "image.iso".
 2020-09-19 14:24:59 +02:00
Christopher Baines
adcad54743
gnu: sqitch: Update to 1.1.0. 
* gnu/packages/databases.scm (sqitch): Update to 1.1.0.
[native-inputs]: Add perl-test-mockobject.
 2020-09-19 09:37:07 +01:00
Christopher Baines
6a1c3a908c
gnu: sqitch: Add more database drivers to inputs. 
These are optional dependencies, but including them in the inputs and thus the
wrapped sqitch script makes using sqitch easier.

* gnu/packages/databases.scm (sqitch)[inputs]: Add perl-dbd-mysql and
perl-dbd-sqlite.
 2020-09-19 09:37:07 +01:00
Guillaume Le Vaillant
70ef8b2455
gnu: electron-cash: Update to 4.1.1. 
* gnu/packages/finance.scm (electron-cash): Update to 4.1.1.
 2020-09-19 10:06:48 +02:00
Tobias Geerinckx-Rice
84da8f7fee
gnu: knot: Update to 3.0.0. 
* gnu/packages/dns.scm (knot): Update to 3.0.0.
Order fields more conventionally.
[source]: Remove obsolete snippet.
 2020-09-19 01:40:05 +02:00
Tobias Geerinckx-Rice
dc5ccd2e4d
gnu: libmanette: Update to 0.2.5. 
* gnu/packages/games.scm (libmanette): Update to 0.2.5.
 2020-09-19 01:40:04 +02:00
Tobias Geerinckx-Rice
4c962fabe9
gnu: libfprint: Update to 1.90.3. 
* gnu/packages/freedesktop.scm (libfprint): Update to 1.90.3.
 2020-09-19 01:40:04 +02:00
Danny Milosavljevic
e6ba735d68
gnu: Add svd2rust. 
* gnu/packages/crates-io.scm (svd2rust): New variable.
 2020-09-18 22:17:52 +02:00
Danny Milosavljevic
efdd545fa7
gnu: Add rust-inflections@1.1.1. 
* gnu/packages/crates-io.scm (rust-inflections-1.1): New variable.
 2020-09-18 22:17:22 +02:00
Danny Milosavljevic
54f1f72c43
gnu: Add rust-svd-parser@0.9.0. 
* gnu/packages/crates-io.scm (rust-svd-parser-0.9): New variable.
 2020-09-18 22:15:48 +02:00
Danny Milosavljevic
2345c39e6c
gnu: Add rust-xmltree@0.8.0. 
* gnu/packages/crates-io.scm (rust-xmltree-0.8): New variable.
 2020-09-18 22:14:57 +02:00
Danny Milosavljevic
24bbc23741
gnu: Add rust-xml-rs@0.7.1. 
* gnu/packages/crates-io.scm (rust-xml-rs-0.7): New variable.
 2020-09-18 22:13:40 +02:00
Danny Milosavljevic
7e25147e15
gnu: Add rust-packed-struct. 
* gnu/packages/crates-io.scm (rust-packed-struct): New variable.
 2020-09-18 22:12:17 +02:00
Efraim Flashner
9ef590dc8a
gnu: xxd: Use cc-for-target. 
* gnu/packages/vim.scm (xxd)[arguments]: Replace hard-coded gcc with
cc-for-target in make-flags.
 2020-09-18 18:25:59 +03:00
Greg Hogan
469e6aaea0
gnu: Add cxxopts. 
* gnu/packages/cpp.scm (cxxopts): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 16:43:17 +02:00
Paul Garlick
389b71aa0f
gnu: Add texlive-microtype. 
* gnu/packages/tex.scm (texlive-microtype): New variable.
 2020-09-18 15:10:13 +01:00
Leo Famulari
62f9921c83
gnu: linux-libre@4.4: Update to 4.4.236. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.236.
(linux-libre-4.4-pristine-source): Update hash.
 2020-09-18 09:38:39 -04:00
Leo Famulari
8b92de7ee6
gnu: linux-libre@4.9: Update to 4.9.236. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.236.
(linux-libre-4.9-pristine-source): Update hash.
 2020-09-18 09:38:39 -04:00
Leo Famulari
76ab528d01
gnu: linux-libre@4.14: Update to 4.14.198. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.198.
(linux-libre-4.14-pristine-source): Update hash.
 2020-09-18 09:38:39 -04:00
Leo Famulari
a91d5b6c05
gnu: linux-libre@4.19: Update to 4.19.146. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.146.
(linux-libre-4.19-pristine-source): Update hash.
 2020-09-18 09:38:39 -04:00
Leo Famulari
e2fad8d494
gnu: linux-libre@5.4: Update to 5.4.66. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.66.
(linux-libre-5.4-pristine-source): Update hash.
 2020-09-18 09:38:39 -04:00
Leo Famulari
3b5b14d381
gnu: linux-libre: Update to 5.8.10. 
* gnu/packages/linux.scm (linux-libre-5.8-version): Update to 5.8.10.
(linux-libre-5.8-pristine-source): Update hash.
 2020-09-18 09:38:28 -04:00
Leo Prikler
dac3fc0692
gnu: komikku: Update to 0.20.0. 
* gnu/packages/gnome.scm (komikku): Update to 0.20.0.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 15:23:23 +02:00
Prafulla Giri
d9dec1473d
gnu: calibre: Clean up 'wrap phase. 
Based on the suggestion of the author, this commit cleans up the
changes introduced by fd3eac4dd7

For more information, see: https://issues.guix.gnu.org/43249

* gnu/packages/e-book.scm (calibre):
[arguments]: Remove the manual 'wrap phase replacement and add a
'wrap-program phase after standard 'wrap phase to make the runtime
dependency QtWebEngineProcess available to the binaries.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 15:21:19 +02:00
Jelle Licht
47640ca67d
gnu: emacs-helpful: Update to 0.17-1.be0e937f. 
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.17-1.b0e937f.
 2020-09-18 15:12:11 +02:00
Mathieu Othacehe
66c83960a5
gnu: libsoundio: Fix indentation. 
* gnu/packages/audio.scm (libsoundio): Fix indentation.
 2020-09-18 15:00:19 +02:00
Alexandros Theodotou
bea98f9a0b
gnu: Add libsoundio. 
* gnu/packages/audio.scm (libsoundio): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 14:52:45 +02:00
Mathieu Othacehe
ade7638d84
Revert "gnu: openblas: Update to 0.3.10." 
This reverts commit c59e9f0a03 because it
triggers too many rebuilds.
 2020-09-18 14:05:51 +02:00
Prafulla Giri
cd6ec6706c
gnu: kdenlive: Simplify 'wrap-executable phase. 
* gnu/packages/kde.scm (kdenlive)[arguments]: Use getenv to set the
values of QT_PLUGIN_PATH and QML2_IMPORT_PATH in the wrapper during
the 'wrap-executable phase.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:53:38 +02:00
Prafulla Giri
34b6dd36bb
gnu: kdenlive: Add missing dependencies. 
This allows to browse the file-system using kdenlive's own file-chooser.

* gnu/packages/kde.scm (kdenlive)
[native-inputs]: Add pkg-config.
[inputs]: Add purpose and qtwebkit.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:53:05 +02:00
Prafulla Giri
18bf33a7c0
gnu: kdenlive: Update to 20.08.1. 
* gnu/packages/kde.scm (kdenlive): Update to 20.08.1.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:52:41 +02:00
Vinicius Monego
7802875abc
gnu: Add python-beren. 
* gnu/packages/python-web.scm (python-beren): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:47:01 +02:00
Vinicius Monego
e1e577e088
gnu: Add python-apiron. 
* gnu/packages/python-web.scm (python-apiron): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:47:00 +02:00
Michael Rohleder
6182897c98
gnu: plantuml: Update to 1.2020.16. 
* gnu/packages/uml.scm (plantuml): Update to 1.2020.16.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:18:09 +02:00
Michael Rohleder
a1f4c48721
gnu: emacs-vterm: Update to 0-3.14e4afd. 
* gnu/packages/emacs-xyz.scm (emacs-vterm): Update to 0-3.14e4afd.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 11:18:09 +02:00
Morgan Smith
de4705d92d
gnu: adms: Update to 2.3.7. 
* gnu/packages/engineering.scm (adms): Update to 2.3.7.
[source]: Change the url to github and use the git-fetch method.
[native-inputs]: Add "autoconf", "automake", "libtool", "perl" and
"perl-xml-libxml".
[home-page]: Use the github page.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 09:48:45 +02:00
Greg Hogan
ff128dc633
gnu: python-networkx: Update to 2.5. 
* gnu/packages/python-xyz.scm (python-networkx): Update to 2.5.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 09:33:44 +02:00
Vinicius Monego
13ba3dc8a3
gnu: Add cozy. 
* gnu/packages/ebook.scm (cozy): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 09:12:02 +02:00
Greg Hogan
c59e9f0a03
gnu: openblas: Update to 0.3.10. 
* gnu/packages/maths.scm (openblas): Update to 0.3.10.
[source]: Fetch from github.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 08:57:48 +02:00
Ludovic Courtès
98b89f4321
gnu: gnome-settings-daemon: Add "guix gc" to low disk space notification. 
* gnu/packages/patches/gnome-settings-daemon-gc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-settings-daemon)[source]: Use it.
 2020-09-18 08:45:40 +02:00
Ludovic Courtès
5ce6c2d91d
gnu: gnome-settings-daemon: Record absolute file name of Baobab. 
* gnu/packages/gnome.scm (gnome-settings-daemon)[arguments]: Add
'set-baobab-file-name' phase.
[inputs]: Add BAOBAB.
 2020-09-18 08:44:48 +02:00
Ludovic Courtès
13a5d9f9e3
gnu: purple-mattermost: Update to 1.2-0.158ce20. 
* gnu/packages/messaging.scm (purple-mattermost): Update to commit 158ce20.
 2020-09-18 08:44:48 +02:00
Leo Famulari
679d5e6b3d
gnu: Properly credit Konrad Hinsen. 
This is a followup to commit a96873565d.

* gnu/packages/python-web.scm: Update list of copyright holders.
 2020-09-17 13:28:03 -04:00
Konrad Hinsen
a96873565d
gnu: Add python-requests-ftp. 
* gnu/packages/python-web.scm (python-requests-ftp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-09-17 13:25:36 -04:00
Eric Bavier
34d150dcb2
gnu: hdf5: Update to 1.10.7. 
Fixes CVE-2018-13870, CVE-2018-13869 and CVE-2018-17435.

* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.7.
 2020-09-17 11:37:02 -05:00
Paul Garlick
94ca1e19b3
gnu: Add texlive-units. 
* gnu/packages/tex.scm (texlive-units): New variable.
 2020-09-17 16:21:28 +01:00
Vinicius Monego
9911dc10e2
gnu: python-libsass: Update to 0.20.1. 
* gnu/packages/python-xyz.scm (python-libsass): Update to 0.20.1.
[arguments]: Enable test that failed in the previous version.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-17 16:18:00 +02:00
Greg Hogan
b96f4f0995
gnu: openmpi: Update to 4.0.5. 
* gnu/packages/mpi.scm (openmpi): Update to 4.0.5.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-17 16:18:00 +02:00
Jelle Licht
9e59ae320e
gnu: emacs-counsel-projectile: Update to 0.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-counsel-projectile): Update to 0.3.1.
 2020-09-17 14:19:41 +02:00
Tobias Geerinckx-Rice
88c7175161
gnu: grammalecte: Update to 1.12.2. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.12.2.
 2020-09-17 14:10:43 +02:00
Tobias Geerinckx-Rice
1306283843
gnu: easyrpg-player: Update to 0.6.2.2. 
* gnu/packages/easyrpg.scm (easyrpg-player): Update to 0.6.2.2.
 2020-09-17 14:10:42 +02:00
Tobias Geerinckx-Rice
dc2f0e703a
gnu: python-psycopg2: Update to 2.8.6. 
* gnu/packages/databases.scm (python-psycopg2): Update to 2.8.6.
 2020-09-17 14:10:42 +02:00
Arne Babenhauserheide
8b030edf02
gnu: guile-wisp: Update to 1.0.3 
* gnu/packages/guile-xyz.scm (guile-wisp): Update to 1.0.3.
[source]: Access via hg and change from bitbucket to hg.sr.ht.
[arguments]: Replace 'bootstrap phase; remove Guile 3 patch
because Guile 3 is supported in 1.0.3.
[native-inputs]: Add autoconf and automake.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-17 13:45:43 +02:00
Konrad Hinsen
731354b8d7
gnu: Add python-pypandoc. 
* gnu/packages/python-xyz.scm (python-pypandoc): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-17 11:41:47 +02:00
Mathieu Othacehe
cc5f9348b8
gnu: cuirass: Update to 0.0.1-46.89f0dbc. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-46.89f0dbc.
 2020-09-17 10:45:38 +02:00
Efraim Flashner
6feb7a2107
gnu: vim-airline: Don't install tests. 
* gnu/packages/vim.scm (vim-airline)[arguments]: Adjust install-plan to
not install tests.
 2020-09-17 00:25:42 +03:00
Tobias Geerinckx-Rice
a765b7b043
gnu: bind: Update to 9.16.7. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.7.
 2020-09-16 23:21:17 +02:00
Vinicius Monego
8d557d4167
gnu: Add emacs-sbt-mode. 
* gnu/packages/emacs-xyz.scm (emacs-sbt-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-09-16 22:26:28 +02:00
Vinicius Monego
98dc073afc
gnu: emacs-fountain-mode: Update to 3.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-fountain-mode): Update to 3.3.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-09-16 22:18:27 +02:00
Morgan Smith
67b1ca4283
gnu: Add emacs-eshell-syntax-highlighting. 
* gnu/packages/emacs-xyz.scm (emacs-eshell-syntax-highlighting): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-09-16 22:06:06 +02:00
Pierre Langlois
891b045f38
gnu: mailutils: Fix unitialized variable in readmsg. 
Fixes <https://bugs.gnu.org/43088>.

* gnu/packages/patches/mailutils-fix-uninitialized-variable.patch: New
file.
* gnu/packages/mail.scm (mailutils)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register patch.
 2020-09-16 19:55:14 +01:00
Tobias Geerinckx-Rice
7194b63833
gnu: youtube-dl: Refer to ffmpeg. 
Addresses <https://issues.guix.gnu.org/43418>.

* gnu/packages/video.scm (youtube-dl)[inputs]: Add ffmpeg.
[arguments]: Fall back to input ffmpeg instead of searching $PATH.
 2020-09-16 13:50:21 +02:00
Paul Garlick
5674ea45a3
gnu: Add texlive-todonotes. 
* gnu/packages/tex.scm (texlive-todonotes): New variable.
 2020-09-16 12:22:59 +01:00
Jan (janneke) Nieuwenhuizen
b85863f7ce
gnu: commencement: bash-mesboot0: Break store file-name in comment. 
Fixes <https://bugs.gnu.org/43005>.
Reported by Vagrant Cascadian <vagrant@debian.org>.

* gnu/packages/commencement.scm (bash-mesboot0)[arguments]: Break store file
name in comment and add unquoted string-append to silence the
’assert-no-store-file-names’ check.  The store file name check is really meant
for code; this file name was unfortunately used is a comment.
 2020-09-16 12:43:36 +02:00
Pierre Neidhardt
9e7b2658d9
gnu: sbcl-hu.dwim.common: Fix missing description. 
* gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.common)[description]: Repeat the
synopsis since there is nothing more to say about this library.
 2020-09-16 09:54:53 +02:00
Gabriel Arazas
feb657d244
gnu: Add rust-ansi-colours-1. 
* gnu/packages/crates-io.scm (rust-ansi-colours-1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-16 09:46:48 +03:00
Gabriel Arazas
c034fcd27f
gnu: Add rust-delta-e-0.2. 
* gnu/packages/crates-io.scm (rust-delta-e-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-16 09:43:17 +03:00
Gabriel Arazas
833dfde76e
gnu: Add rust-lab-0.8, rust-lab-0.7, rust-lab-0.4. 
* gnu/packages/crates-io.scm (rust-lab-0.8, rust-lab-0.7,
rust-lab-0.4): New variables.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-16 09:38:54 +03:00
Leo Famulari
cca5720f41
gnu: Fix fetching the linux-libre deblobbing script. 
This is a followup to commit 105a037090.

* gnu/packages/linux.scm (linux-libre-deblob-scripts): Truncate the version in
the file-name, not the source URI.
 2020-09-15 23:21:57 -04:00
Tobias Geerinckx-Rice
3c9294c05f
gnu: gnome-bluetooth: Update to 3.34.1. 
* gnu/packages/gnome.scm (gnome-bluetooth): Update to 3.34.1.
 2020-09-16 00:29:40 +02:00
Tobias Geerinckx-Rice
d6f1e81356
gnu: libimagequant: Update to 2.12.6. 
* gnu/packages/image.scm (libimagequant): Update to 2.12.6.
 2020-09-16 00:29:39 +02:00
Tobias Geerinckx-Rice
6a638349a0
gnu: tor: Update to 0.4.4.5. 
* gnu/packages/tor.scm (tor): Update to 0.4.4.5.
 2020-09-15 23:36:44 +02:00
Tobias Geerinckx-Rice
6564ffd7ad
gnu: surgescript: Update to 0.5.4.4. 
* gnu/packages/game-development.scm (surgescript): Update to 0.5.4.4.
 2020-09-15 23:36:43 +02:00
Tobias Geerinckx-Rice
c4593535ea
gnu: waylandpp: Update to 0.2.8. 
* gnu/packages/freedesktop.scm (waylandpp): Update to 0.2.8.
 2020-09-15 23:36:43 +02:00
Tobias Geerinckx-Rice
fac43c9259
gnu: homebank: Update to 5.4.3. 
* gnu/packages/finance.scm (homebank): Update to 5.4.3.
 2020-09-15 23:36:42 +02:00
Tobias Geerinckx-Rice
afb3fed9c7
gnu: dico: Update to 2.10. 
* gnu/packages/dico.scm (dico): Update to 2.10.
 2020-09-15 23:36:42 +02:00
Tobias Geerinckx-Rice
e4574a66fe
gnu: python-pbkdf2: Fix typo in description. 
* gnu/packages/python-xyz.scm (python-pbkdf2)[description]: Fix typo.
 2020-09-15 20:59:16 +02:00
Tobias Geerinckx-Rice
49478f9dbd
gnu: dump: Fix typo in description. 
* gnu/packages/backup.scm (dump)[description]: Fix typo.
 2020-09-15 20:59:15 +02:00
Tobias Geerinckx-Rice
04912d4f9f
gnu: cryptsetup: Update to 2.3.4. 
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 2.3.4.
 2020-09-15 20:59:15 +02:00
Leo Prikler
757764b797
gnu: Add gtranslator. 
* gnu/packages/gnome.scm (gtranslator): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-15 20:52:11 +02:00
Leo Prikler
9ede39d64f
gnu: Add libgda. 
* gnu/packages/gnome.scm (libgda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-15 20:52:11 +02:00
Mike Rosset
52139ce5b7
gnu: jack-2: Update to 1.9.14. 
* gnu/packages/audio.scm (jack-2): Update to 1.9.14.
[arguments]: Add environment variable to phase 'set-linkflags.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2020-09-15 20:07:52 +02:00
Ludovic Courtès
f5163902d7
gnu: guix: Update to 1c21468. 
* gnu/packages/package-management.scm (guix): Update to 1c21468.
 2020-09-15 15:29:30 +02:00
Tobias Geerinckx-Rice
e880e63740
gnu: fio: Update to 3.23. 
* gnu/packages/benchmark.scm (fio): Update to 3.23.
 2020-09-15 14:57:07 +02:00
Tobias Geerinckx-Rice
6493d0eec4
gnu: htop: Update to 3.0.2. 
* gnu/packages/admin.scm (htop): Update to 3.0.2.
[native-inputs]: Remove python-wrapper.
 2020-09-15 14:57:07 +02:00
Gabriel Arazas
1c21468c7a
gnu: Add goxel. 
* gnu/packages/graphics.scm (goxel): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-15 14:40:20 +02:00
Ludovic Courtès
1b157bbef0
services: bitlbee: Support libpurple plugins. 
* gnu/services/messaging.scm (bitlbee-shepherd-service): Pass
PURPLE_PLUGIN_PATH as #:environment-variables.
 2020-09-15 14:40:20 +02:00
Pierre Neidhardt
6e05adbb8f
gnu: sbcl-trivial-clipboard: Update to 20200904. 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-clipboard): Update to 20200904.
 2020-09-15 13:26:00 +02:00
Efraim Flashner
a8360892d7
gnu: waybar: Fix build. 
Reported by bdju.

* gnu/packages/pretty-print.scm (fmt-6): New variable.
* gnu/packages/wm.scm (waybar)[inputs]: Replace fmt with fmt-6.
 2020-09-15 12:02:28 +03:00
Nicolas Goaziou
b10edcb9d4
gnu: emacs-org: Update to 9.4. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.4.
(emacs-org-contrib): Update to 20200914.
 2020-09-15 09:21:15 +02:00
Efraim Flashner
af4c633bbb
gnu: roffit: Adjust install phase. 
* gnu/packages/groff.scm (roffit)[arguments]: Remove make-flags. Remove
custom 'pre-install phase. Replace 'install phase to also install
manpage.
 2020-09-15 09:41:37 +03:00
Efraim Flashner
8aea855ac1
gnu: roffit: Wrap binary. 
Fixes <https://debbugs.gnu.org/43306>.

* gnu/packages/groff.scm (roffit)[arguments]: Add 'wrap-binary phase to
help find perl libraries.
 2020-09-15 09:37:18 +03:00
Ricardo Wurmus
818237d947
gnu: bsequencer: Update to 1.8.0. 
* gnu/packages/music.scm (bsequencer): Update to 1.8.0.
 2020-09-15 01:40:54 +02:00
Oleg Pykhalov
f6dfe42129
services: docker: Fix service definition. 
This commit follows a404716d41.

* gnu/services/docker.scm
(docker-configuration)[docker-cli]: New record field.
(docker-service-type): Use this.
* doc/guix.texi (Miscellaneous Services)[Docker Service]: Document this.
 2020-09-15 01:10:55 +03:00
Prafulla Giri
8ba70a6ad3
gnu: kdenlive: Change source URL to follow permanent redirection. 
* gnu/packages/kde.scm (kdenlive)[source]: Change url to follow
permanent redirection.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 23:04:11 +02:00
Prafulla Giri
e33a1e546a
gnu: kde: kdenlive: Make breeze theme available at runtime. 
* gnu/packages/kde.scm (kdenlive):
[inputs]: Add breeze.
[arguments]: In wrap-program phase, add XDG_DATA_DIRS to include
the 'share' sub-directory of the package breeze.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 23:04:11 +02:00
Sébastien Lerique
0d63abebd1
gnu: Add ripmime. 
* gnu/packages/mail.scm (ripmime): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 23:04:10 +02:00
Ludovic Courtès
6cb573889b
gnu: guix: Update to 846403e. 
* gnu/packages/package-management.scm (guix): Update to 846403e.
 2020-09-14 23:04:10 +02:00
Efraim Flashner
a404716d41
services: docker: Fix service definition. 
This is a follow-up to 8422a67dc1.

* gnu/services/docker.scm (docker-service-type): Use a composed list for
packages in profile-service-type.
 2020-09-14 23:22:34 +03:00
Efraim Flashner
276ab588a8
gnu: maven-compiler-plugin: Don't use unstable tarball. 
* gnu/packages/maven.scm (maven-compiler-plugin)[source]: Download using
git-fetch.
 2020-09-14 23:13:22 +03:00
Efraim Flashner
7cd50ad7fa
gnu: maven-resources-plugin: Don't use unstable tarball. 
* gnu/packages/maven.scm (maven-resources-plugin)[source]: Download
using git-fetch.
 2020-09-14 23:13:22 +03:00
Efraim Flashner
05cd8837eb
gnu: maven-jar-plugin: Don't use unstable tarball. 
* gnu/packages/maven.scm (maven-jar-plugin)[source]: Download using
git-fetch.
 2020-09-14 23:13:22 +03:00
Efraim Flashner
819ead3592
gnu: java-hdrhistogram: Don't use unstable tarball. 
* gnu/packages/java.scm (java-hdrhistogram)[source]: Download using
git-fetch.
[arguments]: Add phase to make source writable.
 2020-09-14 23:13:22 +03:00
Ricardo Wurmus
3159fcf145
gnu: r-wgcna: Move to (gnu packages bioconductor). 
This is a follow-up to commit 6e0ab26f31.

* gnu/packages/cran.scm (r-wgcna): Move from here...
* gnu/packages/bioconductor.scm (r-wgcna): ...to here.
 2020-09-14 21:40:15 +02:00
zimoun
3292f6eda0
gnu: r-fithic: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-fithic): Move from here...
* gnu/packages/bioconductor.scm (r-fithic): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:15 +02:00
zimoun
7df42d3774
gnu: r-hitc: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-hitc): Move from here...
* gnu/packages/bioconductor.scm (r-hitc): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:15 +02:00
zimoun
63b75c01c2
gnu: r-hdf5array: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-hdf5array): Move from here...
* gnu/packages/bioconductor.scm (r-hdf5array): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:10 +02:00
zimoun
c61268c1b7
gnu: r-rhdf5lib: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5lib): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:33 +02:00
zimoun
8863c14cd8
gnu: r-beachmat: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-beachmat): Move from here...
* gnu/packages/bioconductor.scm (r-beachmat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:30 +02:00
zimoun
916a3e59ab
gnu: r-singlecellexperiment: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Move from here...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:27 +02:00
zimoun
6b1946b334
gnu: r-scater: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-scater): Move from here...
* gnu/packages/bioconductor.scm (r-scater): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:24 +02:00
zimoun
1193b77e60
gnu: r-scran: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-scran): Move from here...
* gnu/packages/bioconductor.scm (r-scran): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:22 +02:00
zimoun
8c7c6db408
gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:19 +02:00
zimoun
b3a998374c
gnu: r-rgraphviz: Move to (gnu packages bioconductor). 
* gnu/packages/graph.scm (r-rgraphviz): Move from here...
* gnu/packages/bioconductor.scm (r-rgraphviz): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:16 +02:00
zimoun
6e0ab26f31
gnu: r-preprocesscore: Move to (gnu packages bioconductor). 
* gnu/packages/statistics.scm (r-preprocesscore): Move from here...
* gnu/packages/bioconductor.scm (r-preprocesscore): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:12 +02:00
zimoun
f4d920b9f7
gnu: r-fourcseq: Move to (gnu packages bioconductor). 
* gnu/packages/cran.scm (r-fourcseq): Move from here...
* gnu/packages/bioconductor.scm (r-fourcseq): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:00 +02:00
Ricardo Wurmus
62881beb4d
gnu: r-rgraphviz: Build reproducibly. 
Fixes <https://bugs.gnu.org/43398>.

* gnu/packages/graph.scm (r-rgraphviz)[arguments]: Add phase
"make-reproducible".
 2020-09-14 21:25:17 +02:00
Ricardo Wurmus
d60739dff2
gnu: r-quantreg: Update to 5.67. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.67.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
2feb943558
gnu: r-cowplot: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.0.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
90ff99d9c5
gnu: r-rcpparmadillo: Update to 0.9.900.3.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.3.0.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
995641369e
gnu: r-ggdendro: Update to 0.1.22. 
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.22.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
7e2aa0efba
gnu: r-stringi: Update to 1.5.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.5.3.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
98f76dbcfb
gnu: r-mass: Update to 7.3-53. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
1c1b941902
gnu: r-diversitree: Update to 0.9-14. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-14.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
8731d274ae
gnu: r-seurat: Update to 3.2.1. 
* gnu/packages/cran.scm (r-seurat): Update to 3.2.1.
[propagated-inputs]: Remove r-ape; add r-matrixstats.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
e6711231ed
gnu: r-rfast: Update to 2.0.1. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.1.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
0982ffa898
gnu: r-scatterpie: Update to 0.1.5. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
df2210be8b
gnu: r-forecast: Update to 8.13. 
* gnu/packages/cran.scm (r-forecast): Update to 8.13.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
ad10a45225
gnu: r-gamlss: Update to 5.2-0. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.2-0.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
bf37420fe7
gnu: r-parameters: Update to 0.8.5. 
* gnu/packages/cran.scm (r-parameters): Update to 0.8.5.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
515b746945
gnu: r-systemfonts: Update to 0.3.1. 
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.1.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
3f67fb11cf
gnu: r-dalex: Update to 2.0. 
* gnu/packages/cran.scm (r-dalex): Update to 2.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
ef59d57841
gnu: r-sf: Update to 0.9-6. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-6.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
b426f79602
gnu: r-deldir: Update to 0.1-29. 
* gnu/packages/cran.scm (r-deldir): Update to 0.1-29.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
0435f7eec1
gnu: r-shinyjs: Update to 2.0.0. 
* gnu/packages/cran.scm (r-shinyjs): Update to 2.0.0.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
11f448ba74
gnu: r-etm: Update to 1.1.1. 
* gnu/packages/cran.scm (r-etm): Update to 1.1.1.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
ffe714b5f4
gnu: r-fields: Update to 11.4. 
* gnu/packages/cran.scm (r-fields): Update to 11.4.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
0f93324a83
gnu: r-rnifti: Update to 1.2.2. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.2.2.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
0b73771ad9
gnu: r-misc3d: Update to 0.9-0. 
* gnu/packages/cran.scm (r-misc3d): Update to 0.9-0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
015e15c836
gnu: r-rcpphnsw: Update to 0.3.0. 
* gnu/packages/cran.scm (r-rcpphnsw): Update to 0.3.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
a1e92714ce
gnu: r-ggeffects: Update to 0.16.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.16.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
7975d2c3b8
gnu: r-performance: Update to 0.5.0. 
* gnu/packages/cran.scm (r-performance): Update to 0.5.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
5efeef3f01
gnu: r-mosaicdata: Update to 0.20.1. 
* gnu/packages/cran.scm (r-mosaicdata): Update to 0.20.1.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
9e3712958f
gnu: r-mosaiccore: Update to 0.8.0. 
* gnu/packages/cran.scm (r-mosaiccore): Update to 0.8.0.
[propagated-inputs]: Remove r-lazyeval.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
6880269b94
gnu: r-flextable: Update to 0.5.11. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.11.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
07c1620f81
gnu: r-insight: Update to 0.9.5. 
* gnu/packages/cran.scm (r-insight): Update to 0.9.5.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
9a22da3790
gnu: r-officer: Update to 0.3.14. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.14.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
16cc10eafb
gnu: r-extradistr: Update to 1.9.1. 
* gnu/packages/cran.scm (r-extradistr): Update to 1.9.1.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
8d8db33f71
gnu: r-tsa: Update to 1.3. 
* gnu/packages/cran.scm (r-tsa): Update to 1.3.
[propagated-inputs]: Add r-tseries.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
60e4d97295
gnu: r-xfun: Update to 0.17. 
* gnu/packages/cran.scm (r-xfun): Update to 0.17.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
cb4243eaba
gnu: r-processx: Update to 3.4.4. 
* gnu/packages/cran.scm (r-processx): Update to 3.4.4.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
302dacec7e
gnu: r-xts: Update to 0.12.1. 
* gnu/packages/cran.scm (r-xts): Update to 0.12.1.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
dee6078a86
gnu: r-psych: Update to 2.0.8. 
* gnu/packages/cran.scm (r-psych): Update to 2.0.8.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
c5199f2918
gnu: r-inline: Update to 0.3.16. 
* gnu/packages/cran.scm (r-inline): Update to 0.3.16.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
5473d23f59
gnu: r-lmtest: Update to 0.9-38. 
* gnu/packages/cran.scm (r-lmtest): Update to 0.9-38.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
54c91e4a66
gnu: r-shape: Update to 1.4.5. 
* gnu/packages/cran.scm (r-shape): Update to 1.4.5.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
8c7a185779
gnu: r-jsonlite: Update to 1.7.1. 
* gnu/packages/cran.scm (r-jsonlite): Update to 1.7.1.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
adde909369
gnu: r-callr: Update to 3.4.4. 
* gnu/packages/cran.scm (r-callr): Update to 3.4.4.
 2020-09-14 19:07:44 +02:00
Ricardo Wurmus
c629dce1df
gnu: r-ggpmisc: Update to 0.3.6. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.6.
[propagated-inputs]: Add r-glue.
 2020-09-14 19:07:44 +02:00
Ricardo Wurmus
e1ce10e385
gnu: r-activedriverwgs: Update to 1.1.0. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.0.
[propagated-inputs]: Remove r-plyr.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:44 +02:00
Mathieu Othacehe
327f6aec55
gnu: emacs-esup: Fix build. 
* gnu/packages/emacs-xyz.scm (emacs-esup): Update to 0.7.1-1.0de8af8.
[native-inputs]: Add "emacs-buttercup" and "emacs-undercover", remove
"emacs-el-mock".
[propagated-inputs]: Add "emacs-dash".
[arguments]: Fix testing.
 2020-09-14 18:12:41 +02:00
Alexandros Theodotou
913faed8ba
gnu: Add lsp-dsp-lib. 
* gnu/packages/audio.scm (lsp-dsp-lib): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-14 17:23:32 +03:00
Efraim Flashner
8422a67dc1
services: docker: Make docker command available. 
* gnu/services/docker.scm (docker-service-type): Extend the
profile-service-type and add the docker-cli package.
 2020-09-14 17:21:16 +03:00
Ryan Prior
4a2cb3fa0e
gnu: Add quickjs. 
* gnu/packages/javascript.scm (quickjs): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-14 16:12:36 +02:00
Mathieu Othacehe
bc5dcd9ef5
gnu: cuirass: Update to 0.0.1-45.cf11b73. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-45.cf11b73.
 2020-09-14 14:43:33 +02:00
Stefan
8c4f1aa85f
gnu: grub: Support loading files from TFTP if the root filesystem is NFS. 
* gnu/bootloader/grub.scm (grub-root-search): Set the root to "(tftp)" if
the searched-for file is stored on NFS.
 2020-09-14 14:25:04 +02:00
Ricardo Wurmus
f6807498be
gnu: Add altermime. 
* gnu/packages/mail.scm (altermime): New variable.
 2020-09-14 13:17:46 +02:00
zimoun
c22c6de453
gnu: rapicorn: Use pandoc instead of ghc-pandoc. 
* gnu/packages/graphics.scm (rapicorn)[native-inputs]: Replace ghc-pandoc with
pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 10:51:27 +02:00
zimoun
885332832c
gnu: ganeti: Use pandoc instead of ghc-pandoc. 
* gnu/packages/text-editors.scm (ganeti)[native-inputs]: Replace ghc-pandoc
with pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 10:51:27 +02:00
zimoun
5dc5a3116b
gnu: manuskript: Use pandoc instead of ghc-pandoc. 
* gnu/packages/text-editors.scm (manuskript)[inputs]: Replace ghc-pandoc with
pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 10:51:26 +02:00
zimoun
991c61678b
gnu: emacs-org-web-tools: Use pandoc instead of ghc-pandoc. 
* gnu/packages/emacs-xyz.scm (emacs-org-webtools)[inputs]: Replace ghc-pandoc
with pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 10:51:26 +02:00
zimoun
d37279ee1e
gnu: emacs-ox-pandoc: Use pandoc instead of ghc-pandoc. 
* gnu/packages/emacs-xyz.scm (emacs-ox-pandoc)[inputs]: Replace ghc-pandoc
with pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 10:51:26 +02:00
zimoun
8cc8e584ab
gnu: ruby-pandoc-ruby: Use pandoc instead of ghc-pandoc. 
* gnu/packages/ruby.scm (ruby-pandoc-ruby)[native-inputs]: Replace ghc-pandoc
with pandoc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 10:51:26 +02:00
Pierre Neidhardt
24244f3fbf
gnu: python-wrapper: Mention pip in description. 
* gnu/packages/python.scm (python-wrapper)[description]: Mention that `pip'
won't work properly if both python and python-wrapper are installed.
 2020-09-14 10:35:05 +02:00
Efraim Flashner
f165f7c9cb
gnu: sxiv: Use 'cc-for-target'. 
* gnu/packages/image-viewers.scm (sxiv)[arguments]: Replace hard-coded
gcc substitution with cc-for-target in make-flags.
 2020-09-14 10:30:42 +03:00
Efraim Flashner
858bb37a1d
gnu: sxiv: Install icons. 
* gnu/packages/image-viewers.scm (sxiv)[arguments]: Add custom phase to
install icons.
 2020-09-14 10:27:46 +03:00
Efraim Flashner
d67a3beb52
gnu: sxiv: Install desktop file. 
* gnu/packages/image-viewers.scm (sxiv)[arguments]: Add custom
'install-desktop-file phase to install desktop file.
 2020-09-14 10:25:34 +03:00
Gabriel Arazas
e641a95694
gnu: rofi: Update to 1.6.0. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.6.0.
[inputs]: Add libjpeg-turbo.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-09-14 10:08:24 +03:00
Robin Green
1042d269a7
gnu: Update coq and its dependents 
* gnu/packages/coq.scm (coq): Update to 8.11.2
(coq-flocq): Update to 3.3.1
(coq-gappa): Update to 1.4.4
(coq-mathcomp): Update to 1.11.0
(coq-coquelicot): Update to 3.1.0
(coq-bignums): Update to 8.11.0
(coq-interval): Update to 4.0.0
(coq-equations): Update to 1.2.3

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2020-09-14 01:55:52 +02:00
Tobias Geerinckx-Rice
2cae49f9c9
gnu: youtube-dl: Update to 2020.09.14. 
* gnu/packages/video.scm (youtube-dl): Update to 2020.09.14.
 2020-09-14 00:55:34 +02:00
Tobias Geerinckx-Rice
d392226f4a
gnu: python-ansi2html: Fix typo in description. 
* gnu/packages/python-xyz.scm (python-ansi2html)[description]: Fix typo.
 2020-09-14 00:23:01 +02:00
Tobias Geerinckx-Rice
61d02cecd9
gnu: wesnoth: Update to 1.14.14. 
* gnu/packages/games.scm (wesnoth): Update to 1.14.14.
 2020-09-14 00:23:01 +02:00
Tobias Geerinckx-Rice
1e58798bc4
gnu: jasper: Update to 2.0.20 [fixes CVE-2016-9398's revenge]. 
* gnu/packages/image.scm (jasper): Update to 2.0.20.
[arguments]: Skip tests of the now-disabled MIF image format.
 2020-09-14 00:23:00 +02:00
Tobias Geerinckx-Rice
ce4a497b13
gnu: shellcheck: Update to 0.7.1. 
* gnu/packages/haskell-apps.scm (shellcheck): Update to 0.7.1.
 2020-09-14 00:23:00 +02:00
Tobias Geerinckx-Rice
33061f7bf1
gnu: bear: Update to 2.4.4. 
* gnu/packages/build-tools.scm (bear): Update to 2.4.4.
 2020-09-14 00:23:00 +02:00
Leo Prikler
43514b82e4
gnu: libhandy: Enable glade_catalog. 
* gnu/packages/gnome.scm (libhandy)[configure-flags]: Add glade_catalog.
[inputs]: Add glade and libxml2.
(libhandy-0.0)[configure-flags]: Keep glade_catalog disabled.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-13 23:34:23 +02:00
Leo Prikler
88915958c0
gnu: glade: Add catalog and module search paths. 
* gnu/packages/gnome.scm (glade3)[native-search-paths]: Add
GLADE_CATALOG_SEARCH_PATH and GLADE_MODULE_SEARCH_PATH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-13 23:34:23 +02:00
Morgan Smith
227932991f
gnu: emacs-djvu: Add needed inputs 
* gnu/packages/emacs-xyz.scm (emacs-djvu)[inputs, arguments]: New fields.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-13 23:34:23 +02:00
Timotej Lazar
11a962e653
services: certbot: Support registration without email. 
* gnu/services/certbot.scm (certbot-configuration): Add default for the
email option.
(certbot-command): Pass email for registration only when specified.
* doc/guix.texi (Certificate Services): "mandatory"→"optional" email.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-13 23:34:23 +02:00
Greg Hogan
0f918908eb
gnu: fmt: Update to 7.0.3. 
From 820d39a55a5673fffac70c919b8cc3b28d94f6e7 Mon Sep 17 00:00:00 2001
From: Greg Hogan <code@greghogan.com>
Date: Fri, 11 Sep 2020 10:53:20 +0000
Subject: [PATCH] gnu: fmt: Update to 7.0.3.

* gnu/packages/pretty-print.scm (fmt): Update to 7.0.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-13 23:34:23 +02:00
zimoun
0214d5dd84
gnu: gcc-toolchain: Reword description. 
* gnu/packages/commencement.scm (make-gcc-toolchain)[description]: Reword.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-13 23:34:22 +02:00
zimoun
542c4707de
gnu: gccgo: Reword synopsis and description. 
Fixes <https://bugs.gnu.org/43303>.
Reported by Jeffrey Walton <noloader@gmail.com>.

* gnu/packages/gcc.scm: (gccgo-4.9): Add synopsis and description

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-13 23:34:22 +02:00
zimoun
a4fe16ee41
gnu: libgccjit: Reword synopsis and description. 
Fixes <https://bugs.gnu.org/43303>.
Reported by Jeffrey Walton <noloader@gmail.com>.

* gnu/packages/gcc.scm: (libgccjit)[synopsis,description]: Reword.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-13 23:34:22 +02:00
Alexandros Theodotou
66ce92ffe4
gnu: zrythm: Update to 0.8.911. 
* gnu/packages/music.scm (zrythm): Update to 0.8.911.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-13 23:34:22 +02:00
Alexandros Theodotou
ae286b58c8
gnu: Add meson 0.55.1. 
* gnu/packages/build-tools.scm (meson-0.55): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-13 23:34:22 +02:00
Alexandros Theodotou
fce852c458
gnu: libaudec: Update to 0.2.3. 
* gnu/packages/audio.scm (libaudec): Update to 0.2.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-13 23:34:22 +02:00
Ludovic Courtès
978c9bc50d
gnu: libcyaml: Update to 1.1.0. 
* gnu/packages/web.scm (libcyaml): Update to 1.1.0.
 2020-09-13 23:34:22 +02:00
Tobias Geerinckx-Rice
71992a532d
services: Fix zram-device-service. 
* gnu/services/linux.scm (<zram-device-configuration>): Fix typo.
 2020-09-13 23:07:36 +02:00
Leo Famulari
898fbb60b2
gnu: Fix a crash in NTP and Chrony. 
Fixes <https://bugs.gnu.org/43321>.

* gnu/packages/ntp.scm (ntp, chrony)[inputs]: Replace libcap with libcap/next.
 2020-09-13 15:46:02 -04:00
Christopher Baines
1192ae9404
gnu: josm: Fix formatting and install more files. 
This means that JOSM appears in the GNOME Shell menu.

* gnu/packages/geo.scm (josm)[source]: Replace tab character.
[arguments]: Reduce line length, and add install-share-directories phase.
 2020-09-13 13:22:13 +01:00
Raghav Gururajan
a3f6f27bbc
gnu: profanity: Change build system. 
* gnu/package/messaging.scm (profanity) [build-system]: Change from
gnu to glib-or-gtk.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-09-13 11:49:27 +02:00
Raghav Gururajan
d0e85b805e
gnu: profanity: Enable plugins, icons and clipboard. 
* gnu/packages/messaging.scm (profanity) [arguments]<#:configure-flags>
[--enable-python-plugins]: New flag.
[--enable-plugins]: New flag.
[--enable-icons-and-clipboard]: New flag.
[--enable-icons]: Remove flag.
[inputs]: Add python-wrapper.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-09-13 11:48:09 +02:00
Raghav Gururajan
ca7535ddf3
gnu: profanity: Move some dependencies. 
* gnu/packages/messaging.scm (profanity) [native-inputs]: Move gtk-2,
libnotify and libsignal-protocol-c to ...
[inputs]: ... here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-09-13 11:09:18 +02:00
Raghav Gururajan
d257697dc1
gnu: profanity: Make some cosmetic changes. 
* gnu/packages/messaging.scm (profanity): Make some cosmetic changes.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-09-13 11:07:31 +02:00
Efraim Flashner
2c0b715389
gnu: editorconfig-vim: Update to 1.1.1. 
* gnu/packages/vim.scm (editorconfig-vim): Update to 1.1.1.
[source]: Remove snippet.
[arguments]: Remove custom 'patch-editorconfig-path phase.
[inputs]: Remove editorconfig-core-c.
 2020-09-12 22:33:26 +03:00
Ricardo Wurmus
fb24a4d5b8
gnu: muse-sequencer: Enable more features. 
* gnu/packages/music.scm (muse-sequencer)[arguments]: Add phase "fix-include"
to patch header file reference; remove obsolete ENABLE_LV2_SUPPLIED
configuration option; remove ENABLE_RTAUDIO=OFF.
[inputs]: Add lrdf, pulseaudio, rtaudio, and rubberband.
 2020-09-12 14:53:33 +02:00
Ricardo Wurmus
5525aea7cf
gnu: muse-sequencer: Update to 3.1.1. 
* gnu/packages/music.scm (muse-sequencer): Update to 3.1.1.
[arguments]: Set CMAKE_EXE_LINKER_FLAGS and CMAKE_SHARED_LINKER_FLAGS; end
"chdir" phase with #T.
 2020-09-12 14:53:33 +02:00
Nicolas Goaziou
61e7fa07c8
gnu: emacs-pdf-tools: Update to 0.90-1. 
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools): Update to 0.90-1.  Fix
indentation.

Update to an unreleased commit to fix an incompatibility with Emacs 27+.
 2020-09-12 14:09:40 +02:00
Oleg Pykhalov
5f5ff266e5
Revert "gnu: linux-libre: Update to 5.8.8." 
This reverts commit ad42c20921, which breaks
"guix system build" as described in <https://issues.guix.info/issue/43352>.
 2020-09-12 13:20:54 +03:00
Danny Milosavljevic
8ed0c56725
gnu: python-aiodns: Propagate python-pycares. 
* gnu/packages/python-web.scm (python-aiodns)[inputs]: Move python-pycares...
[propagated-inputs]: ...to here.
 2020-09-12 02:33:06 +02:00
Raghav Gururajan
dbcfefe5ec
gnu: Add poezio. 
* gnu/packages/messaging.scm (poezio): New variable.
 2020-09-12 02:25:31 +02:00
Raghav Gururajan
c6e8d17b02
gnu: Add python-potr. 
* gnu/packages/python-crypto.scm (python-potr): New variable.
 2020-09-12 02:19:05 +02:00
Raghav Gururajan
c519a5b5b6
gnu: Add python-slixmpp. 
* gnu/packages/python-xyz.scm (python-slixmpp): New variable.
 2020-09-12 02:16:57 +02:00
Danny Milosavljevic
e88242cb75
gnu: ebusd: Enable MQTT support. 
* gnu/packages/embedded.scm (ebusd)[inputs]: Add mosquitto.
 2020-09-12 02:07:34 +02:00
Danny Milosavljevic
c3bbaea727
gnu: Add mosquitto. 
* gnu/packages/messaging.scm (mosquitto): New variable.
 2020-09-12 02:07:30 +02:00
Tobias Geerinckx-Rice
52569eeb7f
gnu: lldpd: Update to 1.0.6. 
* gnu/packages/networking.scm (lldpd): Update to 1.0.6.
 2020-09-11 23:30:45 +02:00
Tobias Geerinckx-Rice
dd6eac3e47
gnu: enet: Update to 1.3.16. 
* gnu/packages/networking.scm (enet): Update to 1.3.16.
 2020-09-11 23:30:45 +02:00
Tobias Geerinckx-Rice
0649c3cafa
gnu: batctl: Update to 2020.3. 
* gnu/packages/networking.scm (batctl): Update to 2020.3.
 2020-09-11 23:30:44 +02:00
Tobias Geerinckx-Rice
54151d1af5
Revert "gnu: dovecot: Set moduledir to global directory." 
This reverts commit db0109be42.
Same reason as commit d9d88c2ff0.
 2020-09-11 23:30:44 +02:00
Tobias Geerinckx-Rice
d9d88c2ff0
Revert "services: dovecot: Use modules via symlink to system profile." 
This reverts commit bcfe0f0c1e for now.

It breaks most current use(r)s of the Dovecot service and needs to be
combined with an extra modules configuration field of some kind.

See <https://issues.guix.gnu.org/43347>.
 2020-09-11 22:38:08 +02:00
Tobias Geerinckx-Rice
ef500f9be4
gnu: padthv1: Update to 0.9.17. 
* gnu/packages/music.scm (padthv1): Update to 0.9.17.
[inputs]: Replace fftw with fftwf.
 2020-09-11 22:38:07 +02:00
Tobias Geerinckx-Rice
a43fcc720e
gnu: libetpan: Update to 1.9.4. 
* gnu/packages/mail.scm (libetpan): Update to 1.9.4.
 2020-09-11 22:38:07 +02:00
Ricardo Wurmus
a1ea0585d0
gnu: bsequencer: Update to 1.6.0. 
* gnu/packages/music.scm (bsequencer): Update to 1.6.0.
 2020-09-11 22:19:26 +02:00
Ricardo Wurmus
8458490bc2
gnu: r-adaptivesparsity: End build phase on #T. 
* gnu/packages/cran.scm (r-adaptivesparsity)[arguments]: End phase
"link-against-armadillo" with Boolean.
 2020-09-11 22:04:41 +02:00
Ricardo Wurmus
fd498532ab
gnu: r-adaptivesparsity: Fix case of "Gaussian". 
* gnu/packages/cran.scm (r-adaptivesparsity)[description]: Fix typo.
 2020-09-11 22:04:12 +02:00
Ricardo Wurmus
dbef55b7aa
gnu: r-qtl: Use CRAN-URI. 
* gnu/packages/cran.scm (r-qtl)[source]: Use CRAN-URI instead of explicit
mirror URL.
 2020-09-11 22:02:22 +02:00
Ricardo Wurmus
1e8bfc4cf9
gnu: r-qtl: Correct indentation. 
* gnu/packages/cran.scm (r-qtl): Reindent.
[description]: Reflow paragraphs.
 2020-09-11 22:00:30 +02:00
zimoun
d4e2ec1b8a
gnu: r-absfiltergsea: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here...
* gnu/packages/cran.scm (r-absfiltergsea): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:23 +02:00
zimoun
77c7394086
gnu: r-diversitree: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-diversitree): Move from here...
* gnu/packages/cran.scm (r-diversitree): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:23 +02:00
zimoun
415aa8a583
gnu: r-phangorn: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-phangorn): Move from here...
* gnu/packages/cran.scm (r-phangorn): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:21 +02:00
zimoun
f9c0b2e05a
gnu: r-seurat: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-seurat): Move from here...
* gnu/packages/cran.scm (r-seurat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:17 +02:00
zimoun
b31c364467
gnu: r-maldiquant: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here...
* gnu/packages/cran.scm (r-maldiquant): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:12 +02:00
zimoun
30aaee3306
gnu: r-seqminer: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-seqminer): Move from here...
* gnu/packages/cran.scm (r-seqminer): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:07 +02:00
zimoun
66a8e62070
gnu: r-qtl2: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-qtl2): Move from here...
* gnu/packages/cran.scm (r-qtl2): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:59:03 +02:00
zimoun
496a52dc41
gnu: r-qtl: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-qtl): Move from here...
* gnu/packages/cran.scm (r-qtl): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:58:58 +02:00
zimoun
c23ff34423
gnu: r-igraph: Move to (gnu packages cran). 
* gnu/packages/graph.scm (r-igraph): Move from here...
* gnu/packages/cran.scm (r-igraph): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:58:55 +02:00
zimoun
1dc50e4190
gnu: r-diffusionmap: Move to (gnu packages cran). 
* gnu/packages/graph.scm (r-diffusionmap): Move from here...
* gnu/packages/cran.scm (r-diffusionmap): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:58:49 +02:00
zimoun
d3d38bd8f1
gnu: r-adaptivesparsity: Move to (gnu packages cran). 
* gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here...
* gnu/packages/cran.scm (r-adaptivesparsity): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:48:38 +02:00
zimoun
b17ace24ca
gnu: r-codedepends: Comment why it is in bioconductor.scm. 
* gnu/packages/bioconductor.scm (r-codedepends): Add comment.
 2020-09-11 21:46:51 +02:00
Peter Lo
7e88ee9f02
gnu: Add r-fhtest. 
* gnu/packages/bioconductor.scm (r-fhtest): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:33:02 +02:00
Peter Lo
655c4bb25c
gnu: Add r-interval. 
* gnu/packages/bioconductor.scm (r-interval): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:01:30 +02:00
Peter Lo
962c7ceff5
gnu: Add r-perm. 
* gnu/packages/cran.scm (r-perm): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 19:18:46 +02:00
Peter Lo
4a13770003
gnu: Add r-mlecens. 
* gnu/packages/cran.scm (r-mlecens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 19:16:51 +02:00
Peter Lo
488001eb3f
gnu: Add r-icens. 
* gnu/packages/bioconductor.scm (r-icens): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 19:13:58 +02:00
Ricardo Wurmus
19748ea380
gnu: r-tidymodels: Update to 0.1.1. 
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.1.
[propagated-inputs]: Remove r-pillar, r-tidyposterior, r-tidypredict, and
r-tidytext; add r-modeldata and r-tidyr.
[native-inputs]: Add r-rmarkdown, pandoc, and pandoc-citeproc.
 2020-09-11 19:06:47 +02:00
Ricardo Wurmus
cecb700853
gnu: r-infer: Update to 0.5.3. 
* gnu/packages/cran.scm (r-infer): Update to 0.5.3.
 2020-09-11 19:06:47 +02:00
Ricardo Wurmus
6edf558fd0
gnu: Add r-modeldata. 
* gnu/packages/cran.scm (r-modeldata): New variable.
 2020-09-11 19:06:47 +02:00
Ricardo Wurmus
37e9a7fabf
gnu: r-parsnip: Update to 0.1.3. 
* gnu/packages/cran.scm (r-parsnip): Update to 0.1.3.
 2020-09-11 19:04:10 +02:00
Ricardo Wurmus
f5d7f42ae2
gnu: r-tidytext: Update to 0.2.5. 
* gnu/packages/cran.scm (r-tidytext): Update to 0.2.5.
[propagated-inputs]: Remove r-stopwords; add r-tibble.
 2020-09-11 19:04:06 +02:00
Ricardo Wurmus
0fa58b2488
gnu: r-tidypredict: Update to 0.4.6. 
* gnu/packages/cran.scm (r-tidypredict): Update to 0.4.6.
 2020-09-11 19:04:01 +02:00
Ricardo Wurmus
471f0aacd2
gnu: r-tune: Update to 0.1.1. 
* gnu/packages/cran.scm (r-tune): Update to 0.1.1.
[propagated-inputs]: Add r-vctrs.
 2020-09-11 19:03:58 +02:00
Ricardo Wurmus
dfa2cfeb3e
gnu: r-dials: Update to 0.0.8. 
* gnu/packages/cran.scm (r-dials): Update to 0.0.8.
 2020-09-11 19:03:54 +02:00
Ricardo Wurmus
a1d7ec4893
gnu: r-yardstick: Update to 0.0.7. 
* gnu/packages/cran.scm (r-yardstick): Update to 0.0.7.
[propagated-inputs]: Remove r-rcpp.
 2020-09-11 19:03:51 +02:00
Ricardo Wurmus
b0b24be7b7
gnu: r-workflows: Update to 0.1.3. 
* gnu/packages/cran.scm (r-workflows): Update to 0.1.3.
 2020-09-11 19:03:46 +02:00
Ricardo Wurmus
820f415174
gnu: r-hardhat: Update to 0.1.4. 
* gnu/packages/cran.scm (r-hardhat): Update to 0.1.4.
 2020-09-11 19:03:43 +02:00
Peter Lo
23bd6f6ef1
gnu: Add r-tidymodels. 
* gnu/packages/cran.scm (r-tidymodels): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
48d40c7717
gnu: Add r-infer. 
* gnu/packages/cran.scm (r-infer): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
35f033750f
gnu: Add r-parsnip. 
* gnu/packages/cran.scm (r-parsnip): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
8e79e3dd3d
gnu: Add r-tidytext. 
* gnu/packages/cran.scm (r-tidytext): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
39e6cac947
gnu: Add r-hunspell. 
* gnu/packages/cran.scm (r-hunspell): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
f90b4b380a
gnu: Add r-tokenizers. 
* gnu/packages/cran.scm (r-tokenizers): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:49 +02:00
Peter Lo
05bda85901
gnu: Add r-janeaustenr. 
* gnu/packages/cran.scm (r-janeaustenr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
156c558866
gnu: Add r-tidypredict. 
* gnu/packages/cran.scm (r-tidypredict): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
3dbe8a57ec
gnu: Add r-tidyposterior. 
* gnu/packages/cran.scm (r-tidyposterior): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
e309e17f84
gnu: Add r-tune. 
* gnu/packages/cran.scm (r-tune): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
ca379399d2
gnu: Add r-dials. 
* gnu/packages/cran.scm (r-dials): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
26beaffa2d
gnu: Add r-dicedesign. 
* gnu/packages/cran.scm (r-dicedesign): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
fb76feaf7e
gnu: Add r-rsample. 
* gnu/packages/cran.scm (r-rsample): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
d1843fec10
gnu: Add r-yardstick. 
* gnu/packages/cran.scm (r-yardstick): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
c4e34dda85
gnu: Add r-gpfit. 
* gnu/packages/cran.scm (r-gpfit): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
ccf2d02a19
gnu: Add r-hardhat. 
* gnu/packages/cran.scm (r-hardhat): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:48 +02:00
Peter Lo
8d58b5b2a7
gnu: Add r-workflows. 
* gnu/packages/cran.scm (r-workflows): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 18:29:46 +02:00
Alexandros Theodotou
24e37fbbc4
gnu: Add reproc. 
* gnu/packages/cpp.scm (reproc): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-11 17:53:59 +02:00
Tobias Geerinckx-Rice
58833aec3f
gnu: hangups: Update to 0.4.11. 
* gnu/packages/messaging.scm (hangups): Update to 0.4.11.
 2020-09-11 16:28:04 +02:00
Tobias Geerinckx-Rice
436185b96e
gnu: samplv1: Update to 0.9.17. 
* gnu/packages/music.scm (samplv1): Update to 0.9.17.
 2020-09-11 16:28:03 +02:00
Tobias Geerinckx-Rice
418024cad5
gnu: drumkv1: Update to 0.9.17. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.17.
 2020-09-11 16:28:03 +02:00