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1a5384e9a7
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86062 Commits

Author SHA1 Message Date
Maxim Cournoyer
1a5384e9a7
gnu: createrepo-c: Update to 0.20.1. 
* gnu/packages/rpm.scm (createrepo-c): Update to 0.20.1.
 2022-08-02 15:10:01 -04:00
Maxim Cournoyer
de40c03a75
gnu: zchunk: Update to 1.2.2. 
* gnu/packages/compression.scm (zchunk): Update to 1.2.2.
 2022-08-02 15:10:01 -04:00
Maxim Cournoyer
da96de3b66
gnu: drpm: Update to 0.5.1. 
* gnu/packages/rpm.scm (drpm): Update to 0.5.1.
 2022-08-02 15:10:01 -04:00
Maxim Cournoyer
c162dc379c
gnu: createrepo-c: Use gexps. 
* gnu/packages/rpm.scm (createrepo-c)
[phases]: Use gexps.
 2022-08-02 15:10:01 -04:00
Maxim Cournoyer
5ee30cfa84
gnu: libmodulemd: Fix build and use new style inputs and gexps. 
* gnu/packages/rpm.scm (libmodulemd)
[arguments]: Use gexps.
[phases]{fix-glib-doc-prefix}: Use search-input-directory.
{fix-docbook-references}: Use search-input-file.
{move-documentation}: Use search-input-directory.
[native-inputs]: Use new style.  Add python.
[inputs]: Use new style.
 2022-08-02 15:10:00 -04:00
Maxim Cournoyer
b316ddbd83
gnu: rpm: Update to 4.17.1. 
* gnu/packages/package-management.scm (rpm): Update to 4.17.1.
 2022-08-02 15:10:00 -04:00
Maxim Cournoyer
3685939f1b
gnu: rpm: Make popt a propagated input. 
* gnu/packages/package-management.scm (rpm)[inputs]: Move popt...
[propagated-inputs]: ... to here.
 2022-08-02 15:10:00 -04:00
andy Tai
f0be1b82dc
gnu: xpra: Update to 4.3.4 
gnu/packages/xorg.scm (xpra): Update to 4.3.4

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-08-02 21:23:15 +03:00
Paul A. Patience
7e13054373
gnu: python-pyvista: Update to 0.35.2. 
* gnu/packages/python-science.scm (python-pyvista): Update to 0.35.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-08-02 20:59:15 +03:00
Paul A. Patience
797f3de592
gnu: gnuplot: Update to 5.4.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.4.4.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-08-02 20:50:01 +03:00
Paul A. Patience
a53bc40036
gnu: gnuplot: Use G-expressions. 
* gnu/packages/maths.scm (gnuplot)[arguments]: Use G-expressions.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-08-02 20:49:56 +03:00
Paul A. Patience
44c7098809
gnu: gnuplot: Remove input labels. 
* gnu/packages/maths.scm (gnuplot)[inputs]: Move below native-inputs and
sort.
[native-inputs]: Remove labels.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-08-02 20:49:50 +03:00
Efraim Flashner
29c51c6525
gnu: wcalc: Remove pre-generated files. 
* gnu/packages/maths.scm (wcalc)[source]: Add snippet to remove files
generated by bison and flex.
[native-inputs]: Add bison, flex.
 2022-08-02 19:47:50 +03:00
Efraim Flashner
e1fb703e3e
gnu: nano: Update to 6.4. 
* gnu/packages/nano.scm (nano): Update to 6.4.
 2022-08-02 19:09:22 +03:00
Efraim Flashner
51a6dd170b
gnu: parallel: Add bash-minimal. 
* gnu/packages/parallel.scm (parallel)[inputs]: Add bash-minimal.
 2022-08-02 19:04:36 +03:00
Efraim Flashner
6f52d3aec1
gnu: parallel: Update to 20220722. 
* gnu/packages/parallel.scm (parallel): Update to 20220722.
 2022-08-02 18:55:26 +03:00
Ricardo Wurmus
d5ba31c19a
gnu: Add r-rcppalgos. 
* gnu/packages/cran.scm (r-rcppalgos): New variable.
 2022-08-02 15:12:10 +02:00
Ricardo Wurmus
20f9473532
gnu: Add r-phylotools. 
* gnu/packages/cran.scm (r-phylotools): New variable.
 2022-08-02 15:12:01 +02:00
Ricardo Wurmus
03858a7908
gnu: Add python-scanorama. 
* gnu/packages/bioinformatics.scm (python-scanorama): New variable.
 2022-08-02 14:37:38 +02:00
Ricardo Wurmus
c69c2c1c4d
gnu: python-intervaltree: Update to 3.1.0. 
* gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.1.0.
 2022-08-02 14:37:38 +02:00
Ricardo Wurmus
4bc130dcc0
gnu: Add python-geosketch. 
* gnu/packages/python-science.scm (python-geosketch): New variable.
 2022-08-02 14:37:38 +02:00
Ricardo Wurmus
d4b0dc047f
gnu: Add python-fbpca. 
* gnu/packages/python-science.scm (python-fbpca): New variable.
 2022-08-02 14:37:38 +02:00
Guillaume Le Vaillant
d4b7aae9f4
gnu: monero-gui: Update to 0.18.0.0. 
* gnu/packages/finance.scm (monero-gui): Update to 0.18.0.0.
  [inputs]: remove labels.
  [arguments]: Use gexps.
 2022-08-02 12:32:46 +02:00
Guillaume Le Vaillant
e7bac8584b
gnu: monero: Update to 0.18.0.0. 
* gnu/packages/finance.scm (monero): Update to 0.18.0.0.
  [source]: Update snippet.
  [arguments]: Use gexps.
 2022-08-02 12:32:46 +02:00
Nicolas Goaziou
b4d9493ceb
gnu: scummvm: Update to 2.6.0. 
* gnu/packages/emulators.scm (scummvm): Update to 2.6.0.
 2022-08-02 11:53:59 +02:00
Nicolas Goaziou
fde477442e
gnu: emacs-clojure-mode: Update to 5.15.1. 
* gnu/packages/emacs-xyz.scm (emacs-clojure-mode): Update to 5.15.1.
 2022-08-02 11:53:59 +02:00
Michael Rohleder
ead27209b5
gnu: strawberry: Update to 1.0.7. 
* gnu/packages/music.scm (strawberry): Update to 1.0.7.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-08-02 16:21:29 +08:00
Peter Polidoro
a1f7d98a9c
gnu: kicad: Update to 6.0.7. 
* gnu/packages/engineering.scm (kicad): Update to 6.0.7.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-08-02 14:13:49 +08:00
Mădălin Ionel Patrașcu
af207dd46d
gnu: Add r-infercnv. 
* gnu/packages/bioconductor.scm (r-infercnv): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-08-01 23:53:23 +02:00
Mădălin Ionel Patrașcu
5baa37b56c
gnu: Add r-phyclust. 
* gnu/packages/cran.scm (r-phyclust): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-08-01 23:53:23 +02:00
Efraim Flashner
1085514a18
gnu: node-lts: Build with icu4c-71. 
* gnu/packages/node.scm (node-lts)[inputs]: Replace icu4c-70 with
icu4c-71.
[native-inputs]: Same.
 2022-08-02 00:45:41 +03:00
Maxim Cournoyer
4637de6a41
gnu: Add qtlottie. 
* gnu/packages/qt.scm (qtlottie): New variable.
 2022-08-01 17:21:01 -04:00
Ricardo Wurmus
f1b9ae8c20
gnu: python-bbknn: Update to 1.5.1. 
* gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.5.1.
[propagated-inputs]: Add python-pandas.
 2022-08-01 17:46:21 +02:00
muradm
d7e7494bc4
gnu: Add fail2ban. 
* gnu/packages/admin.scm (fail2ban): New variable.
* gnu/packages/patches/fail2ban-0.11.2_CVE-2021-32749.patch,
gnu/packages/patches/fail2ban-0.11.2_fix-setuptools-drop-2to3.patch,
gnu/packages/patches/fail2ban-0.11.2_fix-test-suite.patch,
gnu/packages/patches/fail2ban-paths-guix-conf.patch,
gnu/packages/patches/fail2ban-python310-server-action.patch,
gnu/packages/patches/fail2ban-python310-server-actions.patch,
gnu/packages/patches/fail2ban-python310-server-jails.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 17:20:27 +02:00
Paul A. Patience
18d998ffdb
gnu: trilinos-for-dealii-openmpi: Use G-expressions. 
* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[arguments]: Use
G-expressions.
<#:phases>: Remove trailing boolean.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 17:20:27 +02:00
Paul A. Patience
32bcadc98c
gnu: trilinos-for-dealii-openmpi: Remove input labels. 
* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[native-inputs,
inputs, propagated-inputs]: Remove labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 17:20:26 +02:00
Paul A. Patience
a42730183a
gnu: dealii: Update to 9.4.0. 
* gnu/packages/maths.scm (dealii): Update to 9.4.0.
[propagated-inputs]: Replace sundials-5 with sundials.
(dealii-openmpi)[propagated-inputs]: Replace sundials-openmpi-5 with
sundials-openmpi.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 17:20:26 +02:00
Paul A. Patience
6a15bd031f
gnu: dealii: Use G-expressions. 
* gnu/packages/maths.scm (dealii)[snippet, arguments]: Use
G-expressions.
(dealii-openmpi)[arguments]: Same.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 17:20:26 +02:00
Paul A. Patience
bbf5e033d4
gnu: trilinos-for-dealii-openmpi: Fix build. 
* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[native-inputs]:
Add gcc-7 to fix the failing build with newer versions of gcc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 17:20:26 +02:00
Mădălin Ionel Patrașcu
c6800aa31e
gnu: Add r-muscat. 
* gnu/packages/bioconductor.scm (r-muscat): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-08-01 16:08:11 +02:00
muradm
7e3234cb70
gnu: mu: Update to 1.8.7. 
* gnu/packages/mail.scm (mu): Update to 1.8.7.
[source]: Fetch from git.
[build-system]: Use meson-build-system.
[native-inputs]: Remove glib:bin and tzdata; add gnupg and texinfo; use new
style.
[inputs]: Remove guile.
[arguments]: Remove obsolete 'patch-configure, 'fix-ffi, and
'check-tz-setup phases.  Rename 'patch-bin-sh-in-tests
to 'patch-bin-references and update it.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-08-01 16:03:21 +02:00
Maxim Cournoyer
c454cf6343
gnu: qutebrowser: Fix indentation. 
* gnu/packages/web-browsers.scm (qutebrowser): Fix indentation.
 2022-08-01 09:32:28 -04:00
Maxim Cournoyer
aea756ea33
gnu: qutebrowser: Fix build. 
Fixes <https://issues.guix.gnu.org/56864>, which is a regression introduced
with a0beb297a3.

* gnu/packages/web-browsers.scm (qutebrowser)
[phases]{wrap-qt-process-path}: Do not use the (no longer valid)
"qtwebengine-5" label; instead, locate QtWebEngineProcess via
'search-input-file'.

Reported-by: Jack Hill <jackhill@jackhill.us>
 2022-08-01 09:32:28 -04:00
Mădălin Ionel Patrașcu
8d7a721400
gnu: Add r-millefy. 
* gnu/packages/bioinformatics.scm (r-millefy): New variable.
 2022-08-01 15:14:47 +02:00
Marcel van der Boom
b8df15b748
gnu: exiv2: Fix test failure on ppc64le and aarch64. 
ppc64 and aarch64 do not raise exception and thus output and exit code
for test is different.

See:

  https://github.com/Exiv2/exiv2/issues/365 and
  https://github.com/Exiv2/exiv2/issues/933

* gnu/packages/image.scm (exiv2)[arguments]: Add 'adjust-tests' phase.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 14:08:09 +02:00
Philip McGrath
d7ab54cdb1
gnu: Add python-biblib. 
* gnu/packages/python-xyz.scm (python-biblib): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 14:08:09 +02:00
Danial Behzadi
432ea6446d
gnu: tractor: Update to 3.14. 
* gnu/packages/tor.scm (tractor): Update to 3.14.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 14:08:08 +02:00
Paul A. Patience
d1b60cb65b
gnu: Add comma after “i.e.” in descriptions. 
* gnu/packages/bioconductor.scm (r-anota)[description]: Add comma after
“i.e.”.
* gnu/packages/code.scm (xenon)[description]: Same.
* gnu/packages/cran.scm (r-crosstalk)[description]: Same.
* gnu/packages/python-xyz.scm (python-radon)[description]: Same.
* gnu/packages/statistics.scm (r-logspline)[description]: Same.
* gnu/packages/suckless.scm (tabbed)[description]: Same.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 14:08:08 +02:00
Paul A. Patience
e0de48f0e4
gnu: hdf5-1.8: Add missing comma to linker flag. 
* gnu/packages/maths.scm (hdf5-1.8)[arguments]<#:phases>: Add missing
comma to linker flag.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 14:08:08 +02:00
Z572
dee64d4776
gnu: guile-lens: Fix build. 
* gnu/packages/guile-xyz.scm (guile-lens)
[phases]{run-hall}: replace "dist" to "build-system".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 14:08:08 +02:00