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910 Commits

Author SHA1 Message Date
Marius Bakke
961d2ee269
Merge branch 'master' into core-updates 2020-03-14 13:13:40 +01:00
Marius Bakke
b471337dea
gnu: suitesparse: Build with cmake-minimal. 
* gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to
CMAKE-MINIMAL.
 2020-03-14 11:55:33 +01:00
Tobias Geerinckx-Rice
d3be522036
gnu: openlibm: Use HTTPS home page. 
* gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS.
 2020-03-14 22:01:40 +01:00
Felix Gruber
6ceb771657
gnu: define dune-*-openmpi packages 
* gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi,
dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi,
dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi,
dune-localfunctions-openmpi, dune-functions-openmpi,
dune-pdelab-openmpi): New variables.
(add-openmpi-to-dune-package): New function to add openmpi to the
inputs of a dune-* package and replace all dune-* packages in its
input with the corresponding dune-*-openmpi package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-14 17:54:34 +01:00
Felix Gruber
393dc1cc0b
gnu: dune-*: remove openmpi dependency 
* gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency.
  [arguments]: remove code to setup openmpi for tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-14 17:54:34 +01:00
Felix Gruber
0a703c0486
gnu: dune-istl: Build with suitesparse 
* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build
additional solvers in dune-istl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber
f1f9466e33
gnu: Add dune-subgrid 
* gnu/packages/maths.scm (dune-subgrid): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber
07ebb75d17
gnu: Add dune-uggrid. 
* gnu/packages/maths.scm (dune-uggrid): New variable.
(dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so
that the UGGrid class in dune-grid can be used by packages that
have dune-grid as input.
(dune-functions)[arguments]: Enable tests that previously weren't
built as they require dune-uggrid.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber
a669f6e27b
gnu: dune-*: set up MPI for tests 
* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl,
dune-alugrid): [arguments]: correctly set up MPI instead of disabling
tests that require MPI.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Marius Bakke
50b99c90c8
Merge branch 'master' into core-updates 2020-03-10 20:50:02 +01:00
Tobias Geerinckx-Rice
80fafdba1c
gnu: speedcrunch: Use HTTPS home page. 
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
5969598149
gnu: openblas: Use HTTPS home page. 
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Kei Kebreau
1d3c6a31b5
gnu: wxmaxima: Update to 20.02.4. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4.
[arguments]: Enable tests and set #:test-target to "test".
[native-inputs]: Add xorg-server-for-tests.
 2020-03-06 15:04:34 -05:00
Marius Bakke
df5a2e4f83
gnu: OpenBLAS: Update to 0.3.9. 
* gnu/packages/maths.scm (openblas): Update to 0.3.9.
 2020-03-05 23:36:05 +01:00
Felix Gruber
aac148a87b
gnu: SuiteSparse: Update to 5.7.1. 
* gnu/packages/maths.scm (suitesparse): Update to 5.7.1.
[source]: The latest releases of SuiteSparse have only been published on GitHub.
Fetch from git tag as GitHub releases page only contains autogenerated tarballs
that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to
find SuiteSparse_config.
[arguments]: Add CMake flags used by new components GraphBLAS and Mongoose.
[native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose.
* gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-03-04 18:08:13 -05:00
Marius Bakke
ebb7cf9e21
Merge branch 'master' into core-updates 2020-03-04 23:16:17 +01:00
Jakub Kądziołka
f6b4d395fd
gnu: z3: Build the Python bindings 
* gnu/packages/maths.scm (z3)[arguments]: Add the --python and
  --pypkgdir flags to configure. To facilitate the latter, add
  (guix build python-build-system) to #:modules and #:imported-modules.
 2020-02-23 17:58:38 +01:00
Andreas Enge
b457f3cc16
gnu: Add vinci. 
* gnu/packages/maths.scm (vinci): New variable.
 2020-02-21 13:30:25 +01:00
Marius Bakke
087c94019d
gnu: OpenBLAS: Update to 0.3.8. 
* gnu/packages/maths.scm (openblas): Update to 0.3.8.
 2020-02-15 22:02:56 +01:00
Marius Bakke
7edafc884c
Merge branch 'master' into core-updates 2020-02-14 19:05:45 +01:00
Kei Kebreau
8a0dd289c5
gnu: octave, octave-cli: Update to 5.2.0. 
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0.
[inputs]: Add bdb.
 2020-02-10 14:43:06 -05:00
Marius Bakke
52665d2b6b
Merge branch 'staging' into core-updates 2020-02-03 15:45:44 +01:00
Eric Bavier
aa2e83cce2
gnu: superlu-dist: Update to 6.2.0. 
* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0.
[source]: Update upstream url.  Remove mpi deprecations patch.
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-01-31 09:17:16 -06:00
Eric Bavier
48fe5c36a2
gnu: superlu: Update upstream url. 
* gnu/packages/maths.scm (superlu)[source,home-page]: Update url.
 2020-01-31 09:13:57 -06:00
Marius Bakke
12d8adbfc0
Merge branch 'staging' into core-updates 2020-01-23 23:11:11 +01:00
Kei Kebreau
48446f0f94
gnu: wxmaxima: Update to 20.01.3. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3.
[home-page]: Update URL.
 2020-01-23 14:22:41 -05:00
Marius Bakke
4bd428a7ce
gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'. 
* gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to
LIBJPEG-TURBO.
* gnu/packages/admin.scm (testdisk)[inputs]: Likewise.
* gnu/packages/algebra.scm (giac)[inputs]: Likewise.
* gnu/packages/animation.scm (synfig)[inputs]: Likewise.
* gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise.
* gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise.
* gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise.
* gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise.
* gnu/packages/display-managers.scm (slim)[inputs]: Likewise.
* gnu/packages/ebook.scm (fbreader)[inputs]: Likewise.
* gnu/packages/emacs.scm (emacs)[inputs]: Likewise.
* gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise.
* gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise.
* gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise.
* gnu/packages/freedesktop.scm (weston)[inputs]: Likewise.
* gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame,
eureka, ioquake3)[inputs]: Likewise.
* gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest,
fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise.
* gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise.
* gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise.
(ghostscript)[inputs, native-inputs]: Likewise.
* gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise.
* gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise.
* gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise.
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise.
* gnu/packages/graphics.scm (blender, blender-2.79, openimageio,
openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise.
* gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise.
* gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise.
* gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise.
* gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl,
insight-toolkit)[inputs]: Likewise.
* gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise.
* gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage,
vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise.
* gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise.
* gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11,
openjdk12)[inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[inputs]: Likewise.
* gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise.
* gnu/packages/mate.scm (atril, eom)[inputs]: Likewise.
* gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise.
* gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise.
* gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise.
* gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin,
rawtherapee)[inputs]: Likewise.
* gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise.
* gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise.
* gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise.
* gnu/packages/scheme.scm (racket)[inputs]: Likewise.
* gnu/packages/scribus.scm (scribus)[inputs]: Likewise.
* gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise.
(guile-sdl)[native-inputs]: Likewise.
* gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise.
* gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise.
* gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise.
* gnu/packages/upnp.scm (readymedia)[inputs]: Likewise.
* gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise.
* gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise.
* gnu/packages/web.scm (netsurf)[inputs]: Likewise.
* gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise.
* gnu/packages/wine.scm (wine)[inputs]: Likewise.
* gnu/packages/wv.scm (wv)[inputs]: Likewise.
* gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise.
* gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise.
* gnu/packages/xfce.scm (tumbler)[inputs]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise.
* gnu/packages/xorg.scm (xpra)[inputs]: Likewise.
 2020-01-22 22:12:34 +01:00
Marius Bakke
8ed9be3fac
Merge branch 'staging' into core-updates 2020-01-21 22:39:42 +01:00
Tobias Geerinckx-Rice
1e05e837c7
gnu: elemental: Update home page. 
* gnu/packages/maths.scm (elemental)[home-page]: Use repository home
page.
 2020-01-19 17:57:09 +01:00
Tobias Geerinckx-Rice
2299d83e2f
gnu: petsc: Use HTTPS home page. 
* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS.
 2020-01-19 06:09:02 +01:00
Tobias Geerinckx-Rice
0a44f9c4e4
gnu: Use HTTPS for www.hdfgroup.org. 
* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS.
(hdf-java, h5check)[source]: Likewise.
 2020-01-17 23:32:34 +01:00
Tobias Geerinckx-Rice
821aa687b4
gnu: netcdf: Use HTTPS home page. 
* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS.
 2020-01-17 23:32:34 +01:00
Tobias Geerinckx-Rice
d5730000e2
gnu: scotch: Use HTTPS home page. 
* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS.
 2020-01-17 23:32:34 +01:00
Amin Bandali
a3143063ae
Update email address for Amin Bandali. 
* .mailmap: Add name and email addresses for Amin Bandali.
* gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm:
Update email address for Amin Bandali.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-01-17 18:30:33 +01:00
Marius Bakke
3cfe76bec0
Merge branch 'master' into core-updates 2020-01-15 00:09:46 +01:00
Paul Garlick
09bad3cd42
gnu: python-slepc4py: Update to 3.11.0. 
* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0.
 2020-01-14 17:24:11 +00:00
Paul Garlick
f1cc312e15
gnu: python-petsc4py: Update to 3.11.0. 
* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0.
 2020-01-14 17:23:50 +00:00
Marius Bakke
b7bf02a418
Merge branch 'master' into core-updates 2020-01-11 22:38:24 +01:00
Tobias Geerinckx-Rice
cb169aae81
gnu: hdf5@1.10: Update to 1.10.6. 
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6.
 2020-01-10 23:47:28 +01:00
Konrad Hinsen
e6de152dc1
gnu: lapack: Update to 3.9.0. 
* gnu/packages/maths.scm (lapack): Update to 3.9.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-01-07 12:25:09 +01:00
Mathieu Othacehe
ce9383c090
Merge remote-tracking branch 'master' into core-updates. 2019-12-31 11:04:51 +01:00
Ludovic Courtès
94fea21b21
gnu: hdf5@1.10: Update to 1.10.5. 
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5.  Remove
"hdf5-mpi-deprecations.patch".
* gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-12-13 18:04:04 +01:00
Efraim Flashner
c9e676d0b1
Merge remote-tracking branch 'origin/master' into core-updates 2019-12-12 04:10:59 +02:00
Andreas Enge
0ffc2d537d
gnu: Add lrslib. 
* gnu/packages/maths.scm (lrslib): New variable.
 2019-12-06 22:56:02 +01:00
Marius Bakke
9d5aa00906
Merge branch 'master' into core-updates 2019-12-05 17:57:35 +01:00
Marius Bakke
33b59c1a3e
Merge branch 'staging' 2019-12-04 20:12:41 +01:00
Tobias Geerinckx-Rice
dbef037ff4
gnu: z3: Update to 4.8.7. 
* gnu/packages/maths.scm (z3): Update to 4.8.7.
 2019-12-01 00:49:15 +01:00
Tobias Geerinckx-Rice
1ff64c503a
gnu: nauty: Update to 2.6r12. 
* gnu/packages/maths.scm (nauty): Update to 2.6r12.
 2019-12-01 00:49:14 +01:00
Marius Bakke
0897ad7fac
Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
Ricardo Wurmus
f3640e7395
gnu: Remove obsolete import of R build system module. 
* gnu/packages/maths.scm: Remove import of (guix build-system r).
 2019-11-27 18:29:32 +01:00
zimoun
ef7944b94f
gnu: r-subplex: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-subplex): Move from here...
* gnu/packages/cran.scm (r-subplex): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun
682768deb0
gnu: r-pracma: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-pracma): Move from here...
* gnu/packages/cran.scm (r-pracma): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun
9bd56b1a77
gnu: r-desolve: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-desolve): Move from here...
* gnu/packages/cran.scm (r-desolve): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun
0eb59d9eac
gnu: r-quadprog: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-quadprog): Move from here...
* gnu/packages/cran.scm (r-quadprog): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
Efraim Flashner
7ad3c81240
gnu: gsl: Update to 2.6. 
* gnu/packages/maths.scm (gsl): Update to 2.6.
[source]: Remove patch.
* gnu/packages/patches/gsl-test-i686.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-11-26 22:26:20 +02:00
Kei Kebreau
1e8609f238
gnu: wxmaxima: Update to 19.11.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.11.1.
 2019-11-23 15:33:14 -05:00
Tobias Geerinckx-Rice
ec9a15c2eb
gnu: r-quadprog: Update to 1.5-8. 
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-8.
 2019-11-23 02:00:40 +01:00
Tobias Geerinckx-Rice
3db9cbf676
gnu: r-desolve: Update to 1.25. 
* gnu/packages/maths.scm (r-desolve): Update to 1.25.
 2019-11-23 02:00:40 +01:00
Marius Bakke
b60d2bfff9
Merge branch 'master' into staging 2019-11-21 22:44:15 +01:00
Robert Smith
3b7828cc7f
gnu: Add minisat. 
* gnu/packages/patches/minisat-friend-declaration.patch: New file.
* gnu/packages/patches/minisat-install.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add both files above.
* gnu/packages/maths.scm (minisat): New exported variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2019-11-19 17:27:58 +01:00
Marius Bakke
023522d3a1
Merge branch 'master' into staging 2019-10-21 00:33:43 +02:00
Marius Bakke
9d731fb61d
gnu: vc: Update to 1.4.1. 
* gnu/packages/maths.scm (vc): Update to 1.4.1.
[native-inputs]: Add VIRTEST and a test data origin.
[arguments]: Add phase to copy test data.
 2019-10-20 00:31:15 +02:00
Marius Bakke
b95d1b3289
Merge branch 'master' into staging 2019-10-18 18:10:47 +02:00
Maurice Brémond
06e1239502
gnu: mumps: Build and install shared libraries. 
* gnu/packages/patches/mumps-shared-libseq.patch,
gnu/packages/patches/mumps-shared-mumps.patch,
gnu/packages/patches/mumps-shared-pord.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (mumps)[source](patches): Add them.
[arguments]: In 'configure' phase, adjust "Makefile.inc" for shared
library support.  In 'install' phase, install libmpiseq.so when it
exists.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2019-10-14 18:25:31 +02:00
Maurice Brémond
5dbc79eb60
gnu: mumps: Update to 5.2.1. 
* gnu/packages/maths.scm (mumps): Update to 5.2.1.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2019-10-14 18:25:31 +02:00
Marius Bakke
378ebc048c
Merge branch 'master' into staging 2019-10-13 23:04:06 +02:00
Jan Nieuwenhuizen
185152e39e
gnu: mcrl2: Update source url. 
* gnu/packages/maths.scm (mcrl2): Update source url.
 2019-10-08 23:25:51 +02:00
Marius Bakke
2ea095300a
gnu: OpenBLAS: Update to 0.3.7. 
* gnu/packages/maths.scm (openblas): Update to 0.3.7.
 2019-10-08 21:23:06 +02:00
Marius Bakke
a4384dc970
gnu: OpenBLAS: Incorporate grafted changes. 
* gnu/packages/maths.scm (openblas)[replacement]: Remove.
[arguments]: Add NUM_THREADS in #:make-flags.
(openblas/fixed-num-threads): Remove variable.
 2019-10-08 21:23:06 +02:00
Ludovic Courtès
cf3d1763ed
Merge branch 'core-updates' 2019-10-08 11:37:07 +02:00
Tobias Geerinckx-Rice
0be9038c95
gnu: maxflow: Use HTTPS home page. 
* gnu/packages/maths.scm (maxflow)[home-page]: Use HTTPS.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice
0af12a1367
gnu: maxflow: Correct version to 3.0.5. 
This won't be picked up by ‘guix package -u’, but the code is identical
anyway.  By changing this now, fewer installations will fail to upgrade
at all if upstream ever release a new <3.4.

* gnu/packages/maths.scm (maxflow)[version]: Change to 3.0.5.
[source]: Use version tag instead of raw matching commit.
 2019-10-08 05:29:29 +02:00
Tobias Geerinckx-Rice
2dc0a6cf36
gnu: maxflow: Use GIT-FILE-NAME. 
* gnu/packages/maths.scm (maxflow)[source]: Use GIT-FILE-NAME.
 2019-10-08 05:29:28 +02:00
Ludovic Courtès
0cf2b6f2db
Merge branch 'master' into core-updates 2019-10-01 12:06:00 +02:00
Jan Nieuwenhuizen
e03b912600
gnu: Add mcrl2-minimal. 
* gnu/packages/maths.scm (mcrl2-minimal): New variable.
 2019-09-30 21:26:56 +02:00
Jan Nieuwenhuizen
3bc74090d9
gnu: mcrl2: Update to 201908.0. 
* gnu/packages/maths.scm (mcrl2): Update to 201908.0.
 2019-09-30 21:26:19 +02:00
Tobias Geerinckx-Rice
d49375c722
gnu: z3: Update to 4.8.6. 
* gnu/packages/maths.scm (z3): Update to 4.8.6.
 2019-09-28 05:36:12 +02:00
Eric Bavier
ba567cae97
gnu: dealii: Update to 9.1.1. 
* gnu/packages/maths.scm (dealii): Update to 9.1.1.
[source]: Remove patch no longer needed.
* gnu/local.mk (dist_patch_DATA): ditto.
* gnu/packages/patches/dealii-mpi-deprecations.patch: Delete it.
 2019-09-27 22:23:44 -05:00
Marius Bakke
e7f62a41b2
Merge branch 'master' into core-updates 2019-09-27 19:11:27 +02:00
Ludovic Courtès
11da634a6e
Merge branch 'master' into core-updates 2019-09-24 10:11:38 +02:00
Tobias Geerinckx-Rice
3f55b7be16
gnu: glm: Update to 0.9.9.6. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.6.
[source]: Add patch.
* gnu/packages/patches/glm-restore-install-target.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-09-24 02:10:49 +02:00
Tobias Geerinckx-Rice
ca2ead31d2
gnu: wxmaxima: Update to 19.09.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.09.0.
 2019-09-21 19:17:52 +02:00
Ricardo Wurmus
70bb5d88e0
gnu: octave: Use texlive-union. 
* gnu/packages/maths.scm (octave)[native-inputs]: Replace texlive with
texlive-union containing texlive-epsf.
 2019-09-20 00:43:16 +02:00
Ludovic Courtès
9ff87bb996
Merge branch 'master' into core-updates 2019-09-17 16:27:15 +02:00
Paul Garlick
0746c33eff
gnu: gmsh: Update home page. 
This addresses a 'guix lint' warning.

* gnu/packages/maths.scm (gmsh)[home-page]: Update to avoid URL
redirection.
 2019-09-13 14:53:57 +01:00
Ludovic Courtès
ba05be2249
gnu: openblas: Set 'NUM_THREADS'. 
Until now, OpenBLAS would use at most the N threads, where N is the
number of cores that happened to be available on the build
machine (typically N=8).

* gnu/packages/maths.scm (openblas/fixed-num-threads): New variable.
(openblas)[replacement]: New field.
(openblas-ilp64): Use 'package/inherit'.
 2019-09-13 10:50:11 +02:00
Paul Garlick
abed5df777
gnu: gmsh: Fetch source from Git. 
* gnu/packages/maths.scm (gmsh)[source]: Switch to GIT-FETCH.
 2019-09-12 16:21:31 +01:00
Ricardo Wurmus
8b35c8cd61
gnu: hypre: Update texlive-union. 
* gnu/packages/maths.scm (hypre)[native-inputs]: Replace texlive-generic-xypic
and texlive-fonts-xypic with texlive-xypic; add texlive-cm to the
texlive-union.
 2019-09-12 12:10:05 +02:00
Mark H Weaver
65542a8852
Merge branch 'master' into core-updates 2019-09-06 20:46:00 -04:00
Marius Bakke
c959d99fd0
gnu: hdf4: Update to 4.2.14. 
* gnu/packages/maths.scm (hdf4): Update to 4.2.14.
 2019-09-04 13:17:38 +02:00
Marius Bakke
25bdbb618a
gnu: hdf-eos2: Add libtirpc input. 
* gnu/packages/maths.scm (hdf-eos2)[inputs]: Add LIBTIRPC.
 2019-09-03 18:49:32 +02:00
Marius Bakke
bd3d71cb16
gnu: hdf4: Build with libtirpc. 
* gnu/packages/patches/hdf4-tirpc.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (hdf4)[source](patches): Use it.
[inputs]: Add LIBTIRPC.
[arguments]: Adjust #:configure-flags accordingly.
 2019-09-03 13:24:34 +02:00
Steve Sprang
4cb5d2515c
gnu: Add speedcrunch. 
* gnu/packages/maths.scm (speedcrunch): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-08-31 21:04:08 +02:00
Mark H Weaver
0481289cbc
Merge branch 'master' into core-updates 2019-08-29 17:19:18 -04:00
Tobias Geerinckx-Rice
a7c7015adb
gnu: python-cvxopt: Update to 1.2.3. 
* gnu/packages/maths.scm (python-cvxopt): Update to 1.2.3.
 2019-08-26 05:02:51 +02:00
Mark H Weaver
893c2df00d
Merge branch 'master' into core-updates 2019-08-22 15:53:27 -04:00
Kei Kebreau
439378fd9f
gnu: wxmaxima: Update to 19.08.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.08.0.
 2019-08-20 21:50:30 -04:00
Marius Bakke
462ad9f56b
Merge branch 'master' into core-updates 2019-08-13 20:42:06 +02:00
Marius Bakke
8e7f97b9ff
Merge branch 'master' into staging 2019-08-08 00:35:37 +02:00
Ricardo Wurmus
d36430d274
gnu: r-desolve: Update to 1.24. 
* gnu/packages/maths.scm (r-desolve): Update to 1.24.
 2019-08-06 15:48:52 +02:00
Marius Bakke
1c7d7f3f65
gnu: double-conversion: Update to 3.1.5. 
* gnu/packages/maths.scm (double-conversion): Update to 3.1.5.
 2019-08-04 13:49:54 +02:00
Ludovic Courtès
64de896a71
Merge branch 'master' into core-updates 2019-07-17 15:51:10 +02:00
Paul Garlick
37dc29200c
gnu: Add opencascade-occt. 
* gnu/packages/maths.scm (opencascade-occt): New variable.
 2019-07-16 22:19:26 +01:00
Marius Bakke
97149c5767
gnu: Adjust uses of C{,PLUS}_INCLUDE_PATH for GCC 7. 
These variables are no longer set in the build environment by default.  GCC
still respects these search paths and treats them as "system headers" so we
can continue to use them, just not expect them to be available.

* gnu/packages/mpi.scm (openmpi)[arguments]: Do not attempt to read from
C_INCLUDE_PATH, nor CPLUS_INCLUDE_PATH.
* gnu/packages/games.scm (kiki)[arguments]: Likewise.
* gnu/packages/networking.scm (hcxtools)[arguments]: Likewise.
* gnu/packages/synergy.scm (synergy)[arguments]: Likewise.
* gnu/packages/bioinformatics.scm (gemma, sailfish)[arguments]: Likewise.
* gnu/packages/maths.scm (dune-alugrid)[arguments]: Likewise.
 2019-07-14 18:13:34 +02:00
Marius Bakke
4fb9165515
Merge branch 'staging' into core-updates 2019-07-02 20:18:16 +02:00
Efraim Flashner
697df13f61
gnu: octave-cli: Sort inputs alphabetically. 
* gnu/packages/maths.scm (octave-cli)[inputs]: Sort inputs alphabetically.
 2019-07-02 15:04:56 +03:00
Efraim Flashner
5b786db86c
gnu: atlas: All phases return #t. 
* gnu/packages/maths.scm (atlas)[arguments]: Ensure all custom phases
return #t.
 2019-06-28 10:39:11 +03:00
Ludovic Courtès
5cc1075a76
Merge branch 'master' into core-updates 2019-06-27 23:33:48 +02:00
Tobias Geerinckx-Rice
cb1d8aeeb3
gnu: gnuplot: Update to 5.2.7. 
* gnu/packages/maths.scm (gnuplot): Update to 5.2.7.
 2019-06-21 23:20:36 +02:00
Marius Bakke
6cb1ef9ea2
Merge branch 'staging' into core-updates 2019-06-20 23:38:56 +02:00
Andreas Enge
264334716f
gnu: Add ppl. 
* gnu/packages/maths.scm (ppl): New variable.
 2019-06-20 16:46:37 +02:00
Nicolas Goaziou
ab398380eb
gnu: Move ratpoints into a different module. 
* gnu/packages/maths.scm (ratpoints): Move...
* gnu/packages/algebra.scm: ...here.
 2019-06-20 09:20:29 +02:00
Nicolas Goaziou
0c842e3a59
gnu: Add ratpoints. 
* gnu/packages/maths.scm (ratpoints): New variable.
* gnu/packages/patches/ratpoints-sturm_and_rp_private.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
 2019-06-19 21:43:12 +02:00
Andreas Enge
f455d99dfa
gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module. 
* gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here...
* gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here.
 2019-06-17 19:47:15 +02:00
Andreas Enge
9f6065237d
gnu: Add edge-addition-planarity-suite. 
* gnu/packages/maths.scm (edge-addition-planarity-suite): New variable.
 2019-06-17 17:02:01 +02:00
Ludovic Courtès
494a8cd03a
gnu: units: Update to 2.19. 
* gnu/packages/maths.scm (units): Update to 2.19.
 2019-06-15 18:29:58 +02:00
Ludovic Courtès
d9bbfe042e
Merge branch 'master' into core-updates 2019-06-13 13:24:35 +02:00
Kei Kebreau
eeccd2e575
gnu: wxmaxima: Update to 19.05.7. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.05.7.
 2019-06-04 10:44:14 -04:00
Kei Kebreau
ccc963d528
gnu: maxima: Update to 5.43.0. 
* gnu/packages/maths.scm (maxima): Update to 5.43.0.
[arguments]: Adjust "patch-paths" and "post-install" phases.
 2019-06-04 09:30:38 -04:00
Eric Bavier
4d44bcad56
gnu: dealii-openmpi: Add hdf5-parallel-openmpi input. 
* gnu/packages/maths.scm (dealii-openmpi)[inputs]: Add hdf5-parallel-openmpi.
 2019-05-31 19:41:41 -05:00
Eric Bavier
a13e0f3db4
gnu: slepc: Update to 3.11.1. 
* gnu/packages/maths.scm (slepc): Update to 3.11.1.
[native-inputs]: Add petsc:examples.
[arguments]: Add PETSCCONFIGDIR to #:make-flags.
 2019-05-31 19:41:41 -05:00
Eric Bavier
4f7a4a06c2
gnu: petsc: Update to 3.11.2. 
* gnu/packages/maths.scm (petsc): Update to 3.11.2.
 2019-05-31 19:41:41 -05:00
Eric Bavier
e586c6faf3
gnu: petsc-complex-mpi: Setup MPI for tests. 
* gnu/packages/maths.scm (petsc-complex-mpi)[arguments]: Add 'mpi-setup
phase.
 2019-05-31 19:41:41 -05:00
Marius Bakke
57df83e07d
Merge branch 'staging' into core-updates 2019-05-25 00:25:15 +02:00
Vagrant Cascadian
57e69c1d2e
gnu: mumps: Fix typo "Gaussian". 
* gnu/packages/maths (mumps)[description]: Fix typo.
 2019-05-22 18:29:33 -07:00
Vagrant Cascadian
784c3da11e
gnu: hdf5-parallel-openmpi: Fix typo "explicitly". 
* gnu/packages/maths (hdf5-parallel-openmpi): Fix typo.
 2019-05-22 18:21:16 -07:00
Tobias Geerinckx-Rice
a36efdbc60
gnu: mlucas: Update source hash. 
The tarball was modified in-place with too many small changes to list
here, all of them apparently intended as minor bug fixes.

* gnu/packages/maths.scm (mlucas)[source]: Update sha256.
 2019-05-17 03:27:41 +02:00
Nicolas Goaziou
6f8c41958f
gnu: Add nauty. 
* gnu/packages/maths.scm (nauty): New variable.
 2019-05-16 23:19:08 +02:00
Ludovic Courtès
3ea420f337
gnu: hdf5: Add dependency on Perl. 
* gnu/packages/maths.scm (hdf5)[native-inputs]: Add PERL.
 2019-05-14 12:11:04 +02:00
Ludovic Courtès
549d15712f
gnu: hdf5: Build a thread-safe library. 
* gnu/packages/maths.scm (hdf5)[arguments]: Pass "--enable-threadsafe
--with-pthread --enable-unsupported".
 2019-05-14 12:11:04 +02:00
Ricardo Wurmus
ae9ed1390f
gnu: r-quadprog: Update to 1.5-7. 
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-7.
 2019-05-11 12:05:34 +02:00
Marius Bakke
e77412362f
gnu: OpenBLAS: Update to 0.3.6. 
* gnu/packages/maths.scm (openblas): Update to 0.3.6.
 2019-05-04 16:25:53 +02:00
Ricardo Wurmus
6b1c7ac8ed
gnu: hypre: Unconditionally return #T from build phases. 
* gnu/packages/maths.scm (hypre)[arguments]: Use INVOKE and unconditionally
return #T from build phases.
 2019-04-28 16:05:57 +02:00
Ricardo Wurmus
9cd82b1c9d
gnu: jacal: Unconditionally return #T from configure phase. 
* gnu/packages/maths.scm (jacal)[arguments]: Use INVOKE in configure phase.
 2019-04-28 16:05:57 +02:00
Ricardo Wurmus
32d5360f43
gnu: z3: Unconditionally return #T from build phases. 
* gnu/packages/maths.scm (z3)[arguments]: Use INVOKE in build phases.
 2019-04-28 16:05:56 +02:00
Ricardo Wurmus
cb6f44d4e4
gnu: atlas: Always return #T from build phases. 
* gnu/packages/maths.scm (atlas)[arguments]: Always return #T from build
phases; use INVOKE.
 2019-04-28 16:05:56 +02:00
Ricardo Wurmus
1ec1782106
gnu: make-blis: Always return #T from configure phase. 
* gnu/packages/maths.scm (make-blis)[arguments]: Use INVOKE.
 2019-04-28 16:05:56 +02:00
Ludovic Courtès
7d62fa206b
Merge branch 'staging' 2019-04-28 14:45:35 +02:00
Ricardo Wurmus
ea9d634c7e
gnu: r-quadprog: Update to 1.5-6. 
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-6.
 2019-04-27 12:03:13 +02:00
Marius Bakke
37da4fbe15
Merge branch 'master' into staging 2019-04-23 19:43:59 +02:00
Mark H Weaver
df129041dd
gnu: maxima: Return #t from custom 'check' phase. 
* gnu/packages/maths.scm (maxima)[arguments]: Use invoke in the custom
check phase.
 2019-04-22 14:58:24 -04:00
Marius Bakke
f5961dd585
Merge branch 'master' into staging 2019-04-17 00:08:34 +02:00
Tobias Geerinckx-Rice
be0997278b
gnu: hypre: Update to 2.15.1. 
* gnu/packages/maths.scm (hypre): Update to 2.15.1.
 2019-04-15 05:11:31 +02:00
Tobias Geerinckx-Rice
fabcbf3261
gnu: hypre: Don't use unstable tarball. 
* gnu/packages/maths.scm (hypre)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-15 05:11:31 +02:00
Tobias Geerinckx-Rice
90cea67111
gnu: openspecfun: Don't use unstable tarball. 
* gnu/packages/maths.scm (openspecfun)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-15 05:11:31 +02:00
Tobias Geerinckx-Rice
67f1db3864
gnu: muparser: Don't use unstable tarball. 
* gnu/packages/maths.scm (muparser)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-15 05:11:31 +02:00
Ricardo Wurmus
9f2a87d1bf
gnu: r-pracma: Update to 2.2.5. 
* gnu/packages/maths.scm (r-pracma): Update to 2.2.5.
 2019-04-11 23:37:24 +02:00
Tobias Geerinckx-Rice
ca72dd2cb5
gnu: openlibm: Don't use unstable tarball. 
* gnu/packages/maths.scm (openlibm)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-11 05:42:38 +02:00
Tobias Geerinckx-Rice
830971bf3a
gnu: opencascade-oce: Don't use unstable tarball. 
* gnu/packages/maths.scm (opencascade-oce)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-11 05:42:38 +02:00
Tobias Geerinckx-Rice
5db874d1df
gnu: gctp: Don't use unstable tarball. 
* gnu/packages/maths.scm (gctp)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-11 05:42:37 +02:00
Ludovic Courtès
db7441e470
Merge branch 'master' into staging 2019-04-08 23:08:56 +02:00
Ludovic Courtès
adb223b8ba
gnu: scalapack: Use 'non-copyleft' as the license. 
* gnu/packages/maths.scm (scalapack)[license]: Use LICENSE:NON-COPYLEFT.
 2019-04-08 10:42:51 +02:00
Marius Bakke
ba00235a96
Merge branch 'master' into staging 2019-04-08 00:54:01 +02:00
Ricardo Wurmus
ecfbc51faa
gnu: Add clp. 
* gnu/packages/maths.scm (clp): New variable.
 2019-04-07 21:33:03 +02:00
Marius Bakke
81866208fa
gnu: glm: Update to 0.9.9.5. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.5.
 2019-04-04 14:31:43 +02:00
Kei Kebreau
932d6e276b
gnu: wxmaxima: Update to 19.03.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.03.1.
 2019-04-02 14:45:22 -04:00
Arun Isaac
413f61265e
gnu: Add mlucas. 
* gnu/packages/maths.scm (mlucas): New variable.
 2019-04-01 17:07:31 +05:30
Marius Bakke
571fb008a5
Merge branch 'master' into staging 2019-04-01 00:02:39 +02:00
Ricardo Wurmus
2a509880d4
gnu: hdf-java: Adjust indentation. 
* gnu/packages/maths.scm (hdf-java): Adjust indentation.
 2019-03-27 10:47:34 +01:00
Ricardo Wurmus
64dc8b0bfd
gnu: hdf-java: Fix build. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Fix copying from automake;
substitute embedded hdf5 version number.
 2019-03-27 10:13:46 +01:00
Ricardo Wurmus
9286c0f7e8
gnu: hdf-java: Use INVOKE. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Unconditionally return #T from
build phases.
 2019-03-27 10:12:57 +01:00
Marius Bakke
081850816f
Merge branch 'master' into staging 2019-03-21 23:18:54 +01:00
Marius Bakke
915618f2ff
gnu: glm: Update to 0.9.9.4. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.4.
 2019-03-21 19:23:48 +01:00
Tobias Geerinckx-Rice
b2c52fc9ff
gnu: petsc: Update to 3.10.4. 
* gnu/packages/maths.scm (petsc): Update to 3.10.4.
 2019-03-18 22:17:37 +01:00
Tobias Geerinckx-Rice
0e36b2b7d0
gnu: gnuplot: Update to 5.2.6. 
* gnu/packages/maths.scm (gnuplot): Update to 5.2.6.
 2019-03-18 22:17:36 +01:00
Tobias Geerinckx-Rice
98a5cd51b3
gnu: ipopt: Update to 3.12.12. 
* gnu/packages/maths.scm (ipopt): Update to 3.12.12.
 2019-03-18 21:20:31 +01:00
ng0
47956fa0c2
Correct name and email address for ng0. 
* .mailmap, Makefile.am, doc/guix.de.texi, doc/guix.fr.texi,
doc/guix.texi, etc/completion/fish/guix.fish,
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/enlightenment.scm, gnu/packages/erlang.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm,
gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm,
gnu/packages/guile-wm.scm,gnu/packages/guile-xyz.scm,
gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm,
gnu/packages/haskell.scm, gnu/packages/image-viewers.scm,
gnu/packages/image.scm, gnu/packages/irc.scm,
gnu/packages/language.scm, gnu/packages/libcanberra.scm,
gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm,
gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm,
gnu/packages/ncurses.scm, gnu/packages/networking.scm,
gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm, gnu/packages/python-xyz.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm,
gnu/packages/rust.scm, gnu/packages/scheme.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm,
gnu/packages/tor.scm, gnu/packages/version-control.scm,
gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm:
Correct name and email address for ng0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-03-18 15:05:08 +01:00
Marius Bakke
c958c31cae
gnu: double-conversion: Update to 3.1.4. 
* gnu/packages/maths.scm (double-conversion): Update to 3.1.4.
 2019-03-14 15:40:10 +01:00
Marius Bakke
a4de1a651e
gnu: double-conversion: Update to 3.1.3. 
* gnu/packages/maths.scm (double-conversion): Update to 3.1.3.
[source](uri): Adjust for version tag prefix.
 2019-03-10 18:38:51 +01:00
Marius Bakke
8c5533b582
Merge branch 'master' into staging 2019-03-10 18:38:25 +01:00
Efraim Flashner
0ef54303f3
gnu: c-graph: Update to 2.0.1. 
* gnu/packages/maths.scm (c-graph): Update to 2.0.1.
 2019-03-07 22:00:52 +02:00
Marius Bakke
f339df425e
Merge branch 'master' into staging 2019-03-06 16:31:58 +01:00
Kei Kebreau
5b8f892872
gnu: octave, octave-cli: Update to 5.1.0. 
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.1.0.
 2019-03-06 09:17:33 -05:00
Marius Bakke
19464173ba
Merge branch 'master' into staging 2019-03-01 17:33:00 +01:00
Ricardo Wurmus
8412fa6cc7
gnu: hypre: Remove indirect TexLive dependencies. 
* gnu/packages/maths.scm (hypre)[native-inputs]: Remove
texlive-latex-oberdiek, texlive-generic-ifxetex, and texlive-latex-url from
texlive-union.
 2019-03-01 12:55:34 +01:00
Paul Garlick
758439cf4b
gnu: python-petsc4py: Update to 10.3.1. 
* gnu/packages/maths.scm (python-petsc4py): Update to 10.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-02-26 17:12:29 -05:00
Marius Bakke
aa51eb2073
Merge branch 'master' into staging 2019-02-24 21:25:52 +01:00
Tobias Geerinckx-Rice
eea4a0910c
gnu: 4ti2: Update to 1.6.9. 
* gnu/packages/maths.scm (4ti2): Update to 1.6.9.
[source]: Update URI.
 2019-02-24 17:51:28 +01:00
Eric Bavier
5855756c81
gnu: openblas: Honor parallel-job-count. 
* gnu/packages/maths.scm (openblas)[arguments]: Add "MAKE_NB_JOBS" make flag.
 2019-02-21 22:04:48 -06:00
Marius Bakke
2c76e19df4
Merge branch 'master' into staging 2019-02-20 17:01:39 +01:00
Eric Bavier
40b114c0bb
gnu: dealii: Upgrade to 9.0.1. 
* gnu/packages/patches/dealii-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1.  Use patch.
[arguments]: Use new MPI configuration flags.
 2019-02-13 22:39:12 -06:00
Marius Bakke
6901878894
Merge branch 'master' into staging 2019-02-14 00:20:28 +01:00
Eric Bavier
6d433d6ef7
gnu: Add ELPA. 
* gnu/packages/maths.scm (elpa, elpa-openmpi): New variables.
 2019-02-13 14:08:19 -06:00
Eric Bavier
aa94524052
gnu: petsc: Upgrade to 3.10.3. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.10.3.
 2019-02-13 14:08:19 -06:00
Eric Bavier
f73750e6f4
gnu: scalapack: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (scalapack)[source]: Use it.
 2019-02-13 14:08:19 -06:00
Marius Bakke
602a5ef9f3
gnu: OpenBLAS: Update to 0.3.5. 
* gnu/packages/maths.scm (openblas): Update to 0.3.5.
 2019-02-10 21:04:23 +01:00
Ludovic Courtès
50a93adc05
Merge branch 'staging' 2019-02-09 15:14:59 +01:00
Ricardo Wurmus
4714b00e7a
gnu: Add dune-pdelab. 
* gnu/packages/maths.scm (dune-pdelab): New variable.
 2019-02-08 19:15:03 +01:00
Ricardo Wurmus
85b9371cbe
gnu: Add dune-functions. 
* gnu/packages/maths.scm (dune-functions): New variable.
 2019-02-08 18:29:30 +01:00
Ricardo Wurmus
0e50630f15
gnu: Add dune-typetree. 
* gnu/packages/maths.scm (dune-typetree): New variable.
 2019-02-08 17:58:32 +01:00
Ricardo Wurmus
ab03d899ca
gnu: Add dune-alugrid. 
* gnu/packages/maths.scm (dune-alugrid): New variable.
 2019-02-08 17:52:47 +01:00
Ricardo Wurmus
5a70aa7d69
gnu: Add dune-localfunctions. 
* gnu/packages/maths.scm (dune-localfunctions): New variable.
 2019-02-08 16:26:20 +01:00
Ricardo Wurmus
ea51d3578c
gnu: Add dune-istl. 
* gnu/packages/maths.scm (dune-istl): New variable.
 2019-02-08 16:26:20 +01:00
Ricardo Wurmus
ef6e69fdec
gnu: Add dune-grid. 
* gnu/packages/maths.scm (dune-grid): New variable.
 2019-02-08 16:26:20 +01:00
Eric Bavier
7b84610e21
gnu: hdf5: Upgrade to 1.8.21. 
* gnu/packages/maths.scm (hdf5): Upgrade to 1.8.21.
[source]: Make version manipulations more readable using match.
 2019-02-07 21:20:47 -06:00
Eric Bavier
7fedc3fdfb
gnu: hdf5: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch,
  gnu/packages/patches/hdf5-mpi-deprecations.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
 2019-02-07 21:20:47 -06:00
Eric Bavier
2bdf26f1c8
gnu: superlu-dist: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (superlu-dist)[source]: Use it.
 2019-02-07 21:20:23 -06:00
Ricardo Wurmus
242dbd8e5d
gnu: Add dune-geometry. 
* gnu/packages/maths.scm (dune-geometry): New variable.
 2019-02-07 22:36:01 +01:00
Ricardo Wurmus
3847d1f22f
gnu: Add dune-common. 
* gnu/packages/maths.scm (dune-common): New variable.
 2019-02-07 22:36:01 +01:00
Kei Kebreau
d11840b43e
gnu: wxmaxima: Update to 19.01.3. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.01.3.
 2019-02-06 12:52:27 -05:00