Ludovic Courtès
13f62aef2d
maint: Change Guix System file names from guixsd-*.
...
* Makefile.am (GUIXSD_SUPPORTED_SYSTEMS): Rename to...
(GUIX_SYSTEM_SUPPORTED_SYSTEMS): ... this.
(GUIXSD_VM_SYSTEMS): Rename to...
(GUIX_SYSTEM_VM_SYSTEMS): ... this.
(GUIXSD_IMAGE_BASE): Rename to...
(GUIX_SYSTEM_IMAGE_BASE): ... this. Change "guixsd-" to "guix-system-".
(GUIXSD_VM_IMAGE_BASE): Rename to...
(GUIX_SYSTEM_VM_IMAGE_BASE): ... this. Change "guixsd-" to
"guix-system-".
(release): Adjust accordingly.
* doc/guix.texi (USB Stick and DVD Installation)
(Installing Guix in a VM, Invoking guix system)
(Running Guix in a VM): Adjust file names accordingly.
2019-03-13 23:12:43 +01:00
Ricardo Wurmus
fd4c7a098a
gnu: Add python-velocyto.
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* gnu/packages/bioinformatics.scm (python-velocyto): New variable.
2019-03-13 22:48:53 +01:00
Ricardo Wurmus
55a0a3c853
gnu: python-loompy: Update to 2.0.17.
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* gnu/packages/bioinformatics.scm (python-loompy): Update to 2.0.17.
[source]: Fetch via git.
[arguments]: Enable tests, replace "check" phase.
[propagated-inputs]: Add python-pandas.
[native-inputs]: Add python-pytest.
2019-03-13 22:48:52 +01:00
Oleg Pykhalov
1f058eced3
gnu: Add emacs-dockerfile-mode.
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* gnu/packages/emacs-xyz.scm (emacs-dockerfile-mode): New variable.
2019-03-13 23:23:49 +03:00
Oleg Pykhalov
18964a6029
gnu: Add emacs-docker.
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* gnu/packages/emacs-xyz.scm (emacs-docker): New variable.
2019-03-13 23:23:49 +03:00
Oleg Pykhalov
3899ae891c
gnu: Add emacs-docker-tramp.
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* gnu/packages/emacs-xyz.scm (emacs-docker-tramp): New variable.
2019-03-13 23:23:49 +03:00
Ricardo Wurmus
7757e6d8b9
gnu: python-numba: Update to 0.42.0.
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* gnu/packages/python-xyz.scm (python-numba): Update to 0.42.0.
2019-03-13 20:44:25 +01:00
Ricardo Wurmus
f932540773
gnu: python-llvmlite: Update to 0.27.1.
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* gnu/packages/llvm.scm (python-llvmlite): Update to 0.27.1.
[inputs]: Update patch for custom LLVM variant.
2019-03-13 20:43:55 +01:00
Ricardo Wurmus
6d37301bd5
gnu: Add python-on-guile.
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* gnu/packages/guile-xyz.scm (python-on-guile): New variable.
2019-03-13 20:43:35 +01:00
Ricardo Wurmus
8f05252862
gnu: guile-persist: Install go files to canonical directory.
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* gnu/packages/guile-xyz.scm (guile-persist)[arguments]: Patch target
directory for go files in build phase "patch-prefix".
2019-03-13 20:42:23 +01:00
Ricardo Wurmus
8318b3ed8c
gnu: guile-stis-parser: Install go files to canonical directory.
...
* gnu/packages/guile-xyz.scm (guile-stis-parser)[arguments]: Add build phase
"use-canonical-directory-for-go-files".
2019-03-13 20:41:41 +01:00
Ricardo Wurmus
b9445d0b76
gnu: Add kaldi.
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* gnu/packages/machine-learning.scm (kaldi): New variable.
2019-03-13 19:30:19 +01:00
Ricardo Wurmus
a97796cd53
gnu: Add r-valr.
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* gnu/packages/cran.scm (r-valr): New variable.
2019-03-13 17:19:58 +01:00
Ricardo Wurmus
4291f36a22
gnu: Add r-linnorm.
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* gnu/packages/bioconductor.scm (r-linnorm): New variable.
2019-03-13 17:13:21 +01:00
Ricardo Wurmus
70daf82f28
gnu: Add python2-argparse.
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* gnu/packages/python-xyz.scm (python2-argparse): New variable.
2019-03-13 17:11:09 +01:00
Ricardo Wurmus
3942bf5e4c
gnu: Add r-apcluster.
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* gnu/packages/cran.scm (r-apcluster): New variable.
2019-03-13 17:10:53 +01:00
Ricardo Wurmus
51df43408b
gnu: Add r-gmodels.
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* gnu/packages/cran.scm (r-gmodels): New variable.
2019-03-13 17:10:41 +01:00
Ricardo Wurmus
0b5d12ccdf
gnu: Add tetoolkit.
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* gnu/packages/bioinformatics.scm (tetoolkit): New variable.
2019-03-13 15:14:10 +01:00
Ricardo Wurmus
984a8aa644
gnu: Add r-irkernel.
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* gnu/packages/cran.scm (r-irkernel): New variable.
2019-03-13 14:26:45 +01:00
Ricardo Wurmus
664dedd524
gnu: Add r-irdisplay.
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* gnu/packages/cran.scm (r-irdisplay): New variable.
2019-03-13 14:26:34 +01:00
Ricardo Wurmus
d17186d626
gnu: Add r-repr.
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* gnu/packages/cran.scm (r-repr): New variable.
2019-03-13 14:26:25 +01:00
Ricardo Wurmus
f313baf0c8
gnu: Add r-pbdzmq.
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* gnu/packages/cran.scm (r-pbdzmq): New variable.
2019-03-13 14:26:08 +01:00
Ricardo Wurmus
9475a248fc
gnu: Add r-illuminahumanmethylationepicmanifest.
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* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest):
New variable.
2019-03-13 13:49:20 +01:00
Ricardo Wurmus
09605cb2d1
gnu: Add r-lumi.
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* gnu/packages/bioconductor.scm (r-lumi): New variable.
2019-03-13 13:35:40 +01:00
Ricardo Wurmus
5ec5ba0272
gnu: Add r-methylumi.
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* gnu/packages/bioconductor.scm (r-methylumi): New variable.
2019-03-13 13:35:33 +01:00
Ricardo Wurmus
0f5c9cec50
gnu: Add r-fdb-infiniummethylation-hg19.
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* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
2019-03-13 13:35:18 +01:00
Ricardo Wurmus
86fded86c2
gnu: portaudio: Build position independent code and install more headers.
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* gnu/packages/audio.scm (portaudio)[arguments]: Pass "--with-pic" and
initialize libtool in new build phase "build-only-position-independent-code";
install extra header in new build phase "install-missing-headers".
2019-03-13 13:19:06 +01:00
Ricardo Wurmus
0fbaf1956b
gnu: Add r-minfi.
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* gnu/packages/bioconductor.scm (r-minfi): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
34a24f95ec
gnu: Add r-bumphunter.
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* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
f4eac09653
gnu: Add r-siggenes.
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* gnu/packages/bioconductor.scm (r-siggenes): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
eed6ff0358
gnu: Add r-illuminaio.
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* gnu/packages/bioconductor.scm (r-illuminaio): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
f9201d6704
gnu: Add r-geoquery.
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* gnu/packages/bioconductor.scm (r-geoquery): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
f088775799
gnu: Add r-scone.
...
* gnu/packages/bioconductor.scm (r-scone): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
b409c3570f
gnu: Add r-scdd.
...
* gnu/packages/bioconductor.scm (r-scdd): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
6213e44185
gnu: Add r-noiseq.
...
* gnu/packages/bioconductor.scm (r-noiseq): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
2d7627cfff
gnu: Add r-monocle.
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* gnu/packages/bioconductor.scm (r-monocle): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
925fcdbb79
gnu: Add r-mast.
...
* gnu/packages/bioconductor.scm (r-mast): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
251e08301a
gnu: Add r-icobra.
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* gnu/packages/bioconductor.scm (r-icobra): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
648dbd2702
gnu: Add r-beanplot.
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* gnu/packages/cran.scm (r-beanplot): New variable.
2019-03-13 13:17:52 +01:00
Ricardo Wurmus
026dd77c63
gnu: Add r-nor1mix.
...
* gnu/packages/cran.scm (r-nor1mix): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus
30f53ec86d
gnu: Add r-ggextra.
...
* gnu/packages/cran.scm (r-ggextra): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus
c27927dbf5
gnu: Add r-colourpicker.
...
* gnu/packages/cran.scm (r-colourpicker): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus
5146a24ece
gnu: Add r-shinyjs.
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* gnu/packages/cran.scm (r-shinyjs): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus
849350fbce
gnu: Add r-shinybs.
...
* gnu/packages/cran.scm (r-shinybs): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus
704de8f5ee
gnu: Add r-ihw.
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* gnu/packages/bioconductor.scm (r-ihw): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus
2cb71d81a4
gnu: Add r-lpsymphony.
...
* gnu/packages/bioconductor.scm (r-lpsymphony): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus
3087a2f37b
gnu: Add r-ebseq.
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* gnu/packages/bioconductor.scm (r-ebseq): New variable.
2019-03-13 13:17:51 +01:00
Ricardo Wurmus
7ed869f796
gnu: Add r-nbpseq.
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* gnu/packages/bioconductor.scm (r-nbpseq): New variable.
2019-03-13 13:17:51 +01:00
Nicolas Goaziou
2b6ab17f7d
gnu: wireshark: Update to 3.0.0.
...
* gnu/packages/networking.scm (wireshark): Update to 3.0.0.
2019-03-13 12:31:13 +01:00
Tomáš Čech
77f3d30364
gnu: python-py3status: Update to 3.16.
...
* gnu/packages/python-xyz.scm (python-py3status): Update to 3.16.
2019-03-13 10:06:19 +01:00
