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59 Commits

Author SHA1 Message Date
wcmaier
39fb1f0eb0 Update to 1.50, fix email, use MODPY_EGG_VERSION, clean DEPENDS, regen patches. 2009-06-02 04:48:32 +00:00
jasper
fbf60a43ba - update nutdb to 14.4 2009-05-31 16:12:19 +00:00
sthen
0876f6e643 REGRESS_DEPENDS=${RUN_DEPENDS}; no package change 2009-05-19 10:35:19 +00:00
jasper
5a08fd2f41 - update nutdb to 14.3 
from benoit lecocq, with some tweaks
 2009-04-02 13:24:30 +00:00
naddy
849955ef09 fix link order for static linking 2009-03-24 14:51:04 +00:00
espie
a59532691d bump for python dep 2009-03-11 08:07:56 +00:00
kili
d6195c119a MODPY_EXPAT_DEPENDS doesn't exist any longer. 
While here, update PLISTs, some WANTLIBs, some license
markers and use MODPY_EGG_VERSION where it may help to
keep future PLIST diffs smaller.

help, nitpicking and ok jasper@, ok wcmaier@

note that print/py-reportlab/reportlab needs some more
love.
 2009-01-03 21:27:25 +00:00
jasper
95a4c7ce27 - update nutdb to 14.0 2008-10-24 12:25:29 +00:00
sthen
1a9efa54ec bump packages with Perl .so modules; the old ones don't work 
with new perl and the package signature doesn't change, so we
have to do this ourselves to make pkg_add updates work.

ok simon@
 2008-10-02 20:32:18 +00:00
jasper
13911bd3b9 - update emboss to the latest stable version, 6.0.1 2008-09-24 17:14:26 +00:00
jasper
ddfa68651b - add p5-Bio-ASN1-EntrezGene 2008-09-24 13:37:27 +00:00
jasper
ddc0be8edf import p5-Bio-ASN1-EntrezGene 1.091 
Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI
Entrez Gene genome databases
(http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene). It parses an
ASN.1-formatted Entrez Gene record and returns a data structure that
contains all data items from the gene record.
 2008-09-24 13:36:21 +00:00
jasper
3f7b1e2bf1 - update AcePerl to 1.91 
ok simon@
 2008-09-23 20:57:20 +00:00
jasper
09d4dc6d7e - update nutdb to 13.9 
- update HOMEPAGE
- remove maintainer who has been inactive/unresponsive for years
 2008-09-22 08:13:28 +00:00
jasper
ffb906e4e2 - update nutdb to 13.5 
maintainer time-out.
 2008-04-11 09:15:49 +00:00
jasper
1067ad1896 fix build on mips64. 
no bump, because !mips64 packages didn't change, and mips64 didn't package.

ok mbalmer@ (some time ago)
 2008-02-10 18:23:24 +00:00
okan
fc0db83b02 update to 1.44 from Will Maier (new MAINTAINER) 
ok merdely
 2008-01-12 02:00:24 +00:00
winiger
353c3a971f change dependency to flavored python product 
ok simon@,mbalmer@
 2008-01-11 09:25:59 +00:00
bernd
c26229397e emboss and pscan both install ${LOCALBASE}/bin/pscan. 
Add @conflict markers.
 2007-11-06 06:30:32 +00:00
ajacoutot
756427d1a0 - register egg-info file in PLIST 2007-11-02 10:10:11 +00:00
ajacoutot
137c1a3458 - bring ed(1) to the rescue ; it looks like my latest "fix" was too late 
(I will now hide...)

input by and ok pyr@
 2007-10-19 08:38:24 +00:00
ajacoutot
cb53492933 - oops, got bitten by CVS ; sorry about that 2007-10-19 06:44:36 +00:00
ajacoutot
064f8ab515 - really unbreak 
noticed by Stephan Andre' <andres at msu dot edu>, thanks!
 2007-10-18 20:56:59 +00:00
ajacoutot
da653f2cb9 - make it package again 
- bump (new python version)
 2007-10-18 15:22:15 +00:00
steven
cdb3268835 +emboss 2007-09-25 08:23:38 +00:00
steven
2f69c61a4a initial import of EMBOSS 5.0.0 
European Molecular Biology Open Software Suite
 2007-09-25 08:23:02 +00:00
sthen
d2f4eba081 ace.pl(1) manpage is generated but useless; @comment it to avoid 
"Couldn't find subject in old manpage /usr/local/man/man1/ace.pl.1
Unknown manpage type /usr/local/man/man1/ace.pl.1" at pkg_add.

P5ARCH is in base file sets anyway, remove from PLIST.

ok merdely@
 2007-09-18 23:36:54 +00:00
simon
e9d64e5841 remove surrounding quotes from COMMENT 2007-09-15 21:32:05 +00:00
jasper
be202ef2f9 update nutdb to 12.5 2007-06-11 21:02:40 +00:00
espie
807b2c46da shorten comment 2007-05-17 10:52:25 +00:00
espie
470294650d base64 distinfo with SHA256 2007-04-05 15:37:40 +00:00
martynas
74afee703e update to nutdb-12.4 
ok steven@
 2007-03-31 08:58:30 +00:00
jasper
85ee819f85 update nutdb to 12.3 2007-02-02 14:32:52 +00:00
jasper
b0fddd23c7 fix PKGNAME, noticed by Stuart Henderson 
regen patch while there.
 2007-01-31 13:43:27 +00:00
jasper
5a7554c2b7 update nutdb to 12.0 
(no response from maintainer)
 2006-11-30 17:38:27 +00:00
steven
26b92847b2 master site fixes 2006-07-13 07:43:40 +00:00
alek
215e64d3a2 Bump PKGNAME after recent python switch; regen PLIST 2006-06-03 09:23:14 +00:00
alek
440c0f2686 Fix build with python 2.4 
problem spotted and ok steven@
 2005-12-18 20:33:17 +00:00
alek
1d6d4168a4 Update to 1.41 2005-12-03 22:34:52 +00:00
bernd
f123e951b5 - Fix some file modes here as well. 
- update-patches while I'm here
- bump PKGNAME

ok niallo@
 2005-11-01 17:18:15 +00:00
xsa
2575f38933 job changed :-( so did work environment. 
drop maintainership as I do not often use those anymore...
 2005-10-25 18:37:14 +00:00
naddy
307564922b add missing description 2005-05-26 21:18:46 +00:00
alek
260ce5cd00 Add WANTLIB marker 2005-03-11 17:01:28 +00:00
espie
e6da792b99 +bioperl 2005-03-03 01:42:56 +00:00
espie
c0e8fe3062 bioperl is a big suite of perl modules and scripts for bioinformatics: 
sequence comparisons and interfaces to various biological databases.
 2005-03-03 01:42:12 +00:00
espie
39123c1737 add AcePerl modules 2005-03-03 00:11:47 +00:00
espie
ceb9f444a3 ACEDB is an OO database specialized in genome issues, 
AcePerl yields an interface to it.
 2005-03-03 00:10:54 +00:00
naddy
1463a06ce3 update to 10.15; from maintainer Jon Trembley <jon@brain-box.net> 2005-02-07 17:34:23 +00:00
espie
86482b9616 fix build when biopython is already installed. 2005-01-16 14:26:19 +00:00
naddy
199c30b4ac SIZE 2005-01-05 15:47:05 +00:00