sthen
7b9fdbb2c9
use LIBCXX
2017-04-10 11:45:22 +00:00
jca
70908165e6
Don't hardcode g++
2017-02-27 11:27:25 +00:00
sthen
a1ff17ec85
fix biology/hmmer packaging on !amd64 (impl_sse.h is not produced)
2016-11-25 20:42:57 +00:00
jca
065deff2a7
+hmmer
2016-11-22 11:07:10 +00:00
jca
1ca0ede4a9
Import HMMER, a Hidden Markov Model toolkit.
...
Port from maintainer Senthil Kumar M with tweaks from sthen@ and I.
ok sthen@
HMMER is used for searching sequence databases for sequence homologs,
and for making sequence alignments. It implements methods using
probabilistic models called profile hidden Markov models (profile
HMMs). HMMER is designed to detect remote homologs as sensitively as
possible, relying on the strength of its underlying probability
models.
HMMER is often used together with a profile database, such as Pfam
or many of the databases that participate in Interpro. But HMMER
can also work with query sequences, not just profiles, just like
BLAST. For example, you can search a protein query sequence against
a database with phmmer, or do an iterative search with jackhmmer.
2016-11-22 11:05:51 +00:00
sthen
46e13aac66
sprinkle some deps on www/p5-CGI
2016-04-05 12:21:40 +00:00
naddy
cfbb239b6a
Remove SHARED_ONLY from all CPAN Perl ports and the cpan and perl MODULES.
...
Add WANTLIB+=perl and PKG_ARCH=* as appropriate.
2016-03-20 19:56:05 +00:00
naddy
deea7ed07b
drop SHARED_ONLY from python and ruby ports
2016-03-20 16:12:22 +00:00
ajacoutot
1ef81463b6
Consistent email address.
2016-01-12 13:19:37 +00:00
jasper
a701818e72
- "update" homepage; however the new homepage doesn't contain any working
...
links to a release and many pages are broken
- tell portroach to ignore this port
2016-01-10 16:28:59 +00:00
ajacoutot
399fbd8868
print/py-reportlab/reportlab -> print/py-reportlab
2016-01-05 13:24:05 +00:00
ajacoutot
c0ff75b9a6
Update to biopython-1.66.
2015-11-29 08:22:11 +00:00
sthen
12fa514550
sync WANTLIB
2015-08-19 20:34:33 +00:00
jasper
c8ddb2afd7
update to biopython-1.65
2015-07-18 22:24:48 +00:00
jasper
a825ad7359
update to nutdb-20.1
2015-05-09 08:31:34 +00:00
jasper
4583d9d54f
- update to BioPerl-1.6.924 to unbreak with perl > 5.18
2015-04-03 09:46:53 +00:00
naddy
2382144b92
fold lib-only PFRAG.shared into PLIST, regen PLIST, and bump
2015-03-16 18:07:34 +00:00
naddy
9118259504
Drop USE_GROFF: trivial page footer and acceptable formatting differences
...
only.
2015-01-22 20:26:43 +00:00
naddy
570aa62a9c
Drop remaining MD5/RMD160/SHA1 checksums.
2015-01-18 03:12:39 +00:00
sthen
87bb49c072
sync WANTLIB
2014-11-05 11:43:59 +00:00
sthen
26b647a798
@comment zero-byte perl .bs files in all packages which don't have p5-* PKGNAMEs
...
and bump
2014-06-14 10:34:44 +00:00
sthen
05a61a0350
drop some USE_GROFF in perl ports where it's not needed
2014-04-07 14:51:25 +00:00
sthen
bd9f268c3c
BROKEN with perl 5.18
2014-03-28 11:40:16 +00:00
jasper
ecb20a8b4a
TEST_DEPENDS=${RUN_DEPENDS} already gets set by cpan.port.mk
2014-03-24 07:47:23 +00:00
nigel
45ddc9d76d
Stop creating a symlink when building port
...
Ok espie@ sthen@ jasper@
2014-03-23 13:10:22 +00:00
ajacoutot
58f1a6f9f6
USE_LIBTOOL=Yes is the default now.
2013-03-21 08:45:11 +00:00
nigel
011de064f8
WANTLIB updates for fontconfig and other libraries.
...
Ok sthen
2013-03-19 13:07:13 +00:00
espie
946964cc5d
PERMIT/ REGRESS->TEST sweep
2013-03-10 23:04:44 +00:00
sthen
5aa82ed35c
whitespace
2012-10-23 09:39:51 +00:00
ajacoutot
b7eab0566c
boring morning useless cleanup: remove the FreeBSD RCS tags; it makes
...
sense for ports Makefile but not really for categories.
ok espie@
2012-08-18 07:25:25 +00:00
sthen
67bd7b497a
Fix path to nutdb's config files and build the gui version. Problem noted
...
by Juha Erkkila (with a diff, but I fixed the problems in a different way).
2011-11-28 10:18:53 +00:00
jasper
26f925af3f
- fix WANTLIB
2011-11-01 16:05:26 +00:00
espie
0bee1a3020
FLAVOR:L
2011-10-17 12:57:39 +00:00
espie
61199a1dbc
normalize pkgpath
2011-09-16 08:48:01 +00:00
naddy
e8a506c3df
don't override CFLAGS
2011-08-24 19:29:24 +00:00
jasper
bc48b1c61a
- update to 16.12
2011-07-08 22:11:48 +00:00
jasper
eec0417831
bump after default python version switch
2011-06-08 17:31:05 +00:00
jasper
7380b5d3fc
- update to 16.9
...
- doesn't need groff
- tweak license
from gleydson soares
2011-04-15 21:10:27 +00:00
naddy
889ea84f08
EPOCH bumps to keep package versions from going back.
...
Turned up by a bulk build with a year-old plist database.
2011-04-14 21:21:56 +00:00
jasper
42456647fd
- add some more functionality
2010-12-22 20:24:57 +00:00
jasper
26c6de9fe1
- hookup excel support
2010-12-22 18:51:49 +00:00
jasper
578c9b2839
- use cpan module
...
- install examples
2010-12-18 00:19:51 +00:00
jasper
5752992555
- update bioperl to 1.6.1
2010-12-16 12:05:04 +00:00
jasper
a7602cde70
- update AcePerl to 1.92
2010-12-14 23:53:07 +00:00
jasper
5c291dcae9
- switch to cpan module
...
- install examples
- sort makefile/dependencies
2010-12-13 10:26:00 +00:00
ajacoutot
aaa1885833
Bump after recent cpan.port.mk change.
...
ok jasper@
2010-12-03 11:44:22 +00:00
jasper
ae9611ce5b
- update nutdb to 16.0
2010-12-01 08:40:16 +00:00
espie
2314c85f45
convert to new style depends
...
zap default spec that are not needed
convert libspecs as well
convert p* to REVISION.
No package changes
2010-11-15 00:22:45 +00:00
ajacoutot
ff07e285bc
Remove USE_X11.
2010-10-24 20:58:58 +00:00
espie
7b7cc80d38
USE_GROFF=Yes
2010-10-18 16:52:44 +00:00
