cpet/openbsd-ports
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Update to biopython-1.66.

Browse Source
This commit is contained in:
ajacoutot 2015-11-29 08:22:11 +00:00
parent 377874924c
commit c0ff75b9a6
4 changed files with 9 additions and 19 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

5
biology/py-biopython/Makefile
View File

@ -1,11 +1,10 @@
# $OpenBSD: Makefile,v 1.23 2015/07/18 22:24:48 jasper Exp $
# $OpenBSD: Makefile,v 1.24 2015/11/29 08:22:11 ajacoutot Exp $
SHARED_ONLY= Yes
COMMENT= Python tools for computational molecular biology
MODPY_EGG_VERSION= 1.65
MODPY_EGG_VERSION= 1.66
DISTNAME= biopython-${MODPY_EGG_VERSION}
REVISION=0
CATEGORIES= biology
HOMEPAGE= http://www.biopython.org/

4
biology/py-biopython/distinfo
View File

@ -1,2 +1,2 @@
SHA256 (biopython-1.65.tar.gz) = RjzIHbhOm/zfsVYpURyB7VVqbAKH5nDb/oDwPGXSqI4=
SIZE (biopython-1.65.tar.gz) = 12641342
SHA256 (biopython-1.66.tar.gz) = UXjqOzQ7HYcQ85IFOGCT5Tae1lOqAg4bDEt2IqWTRsE=
SIZE (biopython-1.66.tar.gz) = 13724754

11
biology/py-biopython/patches/patch-setup_py
View File

@ -1,11 +0,0 @@
$OpenBSD: patch-setup_py,v 1.7 2015/07/18 22:24:48 jasper Exp $
--- setup.py.orig Sat Dec 17 11:34:46 2005
+++ setup.py Sat Jul 18 15:17:11 2015
@@ -172,6 +172,7 @@ def is_automated():
def check_dependencies():
"""Return whether the installation should continue."""
+ return 1
# There should be some way for the user to tell specify not to
# check dependencies. For example, it probably should not if
# the user specified "-q". However, I'm not sure where

8
biology/py-biopython/pkg/PLIST
View File

@ -1,4 +1,4 @@
@comment $OpenBSD: PLIST,v 1.8 2015/07/18 22:24:48 jasper Exp $
@comment $OpenBSD: PLIST,v 1.9 2015/11/29 08:22:11 ajacoutot Exp $
lib/python${MODPY_VERSION}/site-packages/Bio/
lib/python${MODPY_VERSION}/site-packages/Bio/Affy/
lib/python${MODPY_VERSION}/site-packages/Bio/Affy/CelFile.py
@ -623,6 +623,10 @@ lib/python${MODPY_VERSION}/site-packages/Bio/PDB/PSEA.py
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/PSEA.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/Polypeptide.py
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/Polypeptide.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/QCPSuperimposer/
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/QCPSuperimposer/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/QCPSuperimposer/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.so
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/Residue.py
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/Residue.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/PDB/ResidueDepth.py
@ -794,8 +798,6 @@ lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/Residues.py
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/Residues.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/__init__.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/three_to_one_dict.py
lib/python${MODPY_VERSION}/site-packages/Bio/SCOP/three_to_one_dict.pyc
lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/
lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/__init__.py
lib/python${MODPY_VERSION}/site-packages/Bio/SVDSuperimposer/__init__.pyc