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158 Commits

Author SHA1 Message Date
jasper
4583d9d54f - update to BioPerl-1.6.924 to unbreak with perl > 5.18 2015-04-03 09:46:53 +00:00
naddy
2382144b92 fold lib-only PFRAG.shared into PLIST, regen PLIST, and bump 2015-03-16 18:07:34 +00:00
naddy
9118259504 Drop USE_GROFF: trivial page footer and acceptable formatting differences 
only.
 2015-01-22 20:26:43 +00:00
naddy
570aa62a9c Drop remaining MD5/RMD160/SHA1 checksums. 2015-01-18 03:12:39 +00:00
sthen
87bb49c072 sync WANTLIB 2014-11-05 11:43:59 +00:00
sthen
26b647a798 @comment zero-byte perl .bs files in all packages which don't have p5-* PKGNAMEs 
and bump
 2014-06-14 10:34:44 +00:00
sthen
05a61a0350 drop some USE_GROFF in perl ports where it's not needed 2014-04-07 14:51:25 +00:00
sthen
bd9f268c3c BROKEN with perl 5.18 2014-03-28 11:40:16 +00:00
jasper
ecb20a8b4a TEST_DEPENDS=${RUN_DEPENDS} already gets set by cpan.port.mk 2014-03-24 07:47:23 +00:00
nigel
45ddc9d76d Stop creating a symlink when building port 
Ok espie@ sthen@ jasper@
 2014-03-23 13:10:22 +00:00
ajacoutot
58f1a6f9f6 USE_LIBTOOL=Yes is the default now. 2013-03-21 08:45:11 +00:00
nigel
011de064f8 WANTLIB updates for fontconfig and other libraries. 
Ok sthen
 2013-03-19 13:07:13 +00:00
espie
946964cc5d PERMIT/ REGRESS->TEST sweep 2013-03-10 23:04:44 +00:00
sthen
5aa82ed35c whitespace 2012-10-23 09:39:51 +00:00
ajacoutot
b7eab0566c boring morning useless cleanup: remove the FreeBSD RCS tags; it makes 
sense for ports Makefile but not really for categories.

ok espie@
 2012-08-18 07:25:25 +00:00
sthen
67bd7b497a Fix path to nutdb's config files and build the gui version. Problem noted 
by Juha Erkkila (with a diff, but I fixed the problems in a different way).
 2011-11-28 10:18:53 +00:00
jasper
26f925af3f - fix WANTLIB 2011-11-01 16:05:26 +00:00
espie
0bee1a3020 FLAVOR:L 2011-10-17 12:57:39 +00:00
espie
61199a1dbc normalize pkgpath 2011-09-16 08:48:01 +00:00
naddy
e8a506c3df don't override CFLAGS 2011-08-24 19:29:24 +00:00
jasper
bc48b1c61a - update to 16.12 2011-07-08 22:11:48 +00:00
jasper
eec0417831 bump after default python version switch 2011-06-08 17:31:05 +00:00
jasper
7380b5d3fc - update to 16.9 
- doesn't need groff
- tweak license

from gleydson soares
 2011-04-15 21:10:27 +00:00
naddy
889ea84f08 EPOCH bumps to keep package versions from going back. 
Turned up by a bulk build with a year-old plist database.
 2011-04-14 21:21:56 +00:00
jasper
42456647fd - add some more functionality 2010-12-22 20:24:57 +00:00
jasper
26c6de9fe1 - hookup excel support 2010-12-22 18:51:49 +00:00
jasper
578c9b2839 - use cpan module 
- install examples
 2010-12-18 00:19:51 +00:00
jasper
5752992555 - update bioperl to 1.6.1 2010-12-16 12:05:04 +00:00
jasper
a7602cde70 - update AcePerl to 1.92 2010-12-14 23:53:07 +00:00
jasper
5c291dcae9 - switch to cpan module 
- install examples
- sort makefile/dependencies
 2010-12-13 10:26:00 +00:00
ajacoutot
aaa1885833 Bump after recent cpan.port.mk change. 
ok jasper@
 2010-12-03 11:44:22 +00:00
jasper
ae9611ce5b - update nutdb to 16.0 2010-12-01 08:40:16 +00:00
espie
2314c85f45 convert to new style depends 
zap default spec that are not needed
convert libspecs as well
convert p* to REVISION.

No package changes
 2010-11-15 00:22:45 +00:00
ajacoutot
ff07e285bc Remove USE_X11. 2010-10-24 20:58:58 +00:00
espie
7b7cc80d38 USE_GROFF=Yes 2010-10-18 16:52:44 +00:00
jasper
776faef6ea - switch to new CPAN_EXAMPLES 2010-10-01 21:58:22 +00:00
sthen
33fe97dfb9 bump 2010-09-24 15:23:05 +00:00
jasper
b73efe1a0a - remove a .orig file after patches to prevent it from ending up in PLIST 2010-09-10 13:46:21 +00:00
fgsch
9719068811 Bump revision after python's default change. 2010-08-30 16:48:31 +00:00
jasper
68b3c80982 - install examples too 2010-08-30 11:01:06 +00:00
jasper
da8e00c620 - update to 1.10 2010-08-26 13:35:24 +00:00
merdely
3d8057d2a8 Update to 15.7. 
From Daniel Dickman.
ok jasper@
 2010-08-18 03:00:40 +00:00
naddy
0aa15ad152 switch to REVISION 2010-07-24 15:35:40 +00:00
jasper
5cbd24e920 - remove mips64 workaround 2010-05-22 08:06:33 +00:00
ajacoutot
983fd44e85 Consistency: remove the 1, 2 or even 3 empty blank lines. 2010-04-15 13:56:33 +00:00
jasper
228964a8d2 - extend archtecture tests for mips64el 
ok naddy@ phessler@
 2010-02-09 12:23:59 +00:00
espie
100f0c7870 SUBDIR += is wrong: it means the makefile will pick up SUBDIR from env, thus 
breaking cd /usr/ports && SUBDIR=some/path make something for
category makefiles. While there, also put spaces around += uniformously.
okay naddy@, jasper@
 2010-02-01 17:00:12 +00:00
kili
8fc6287292 WANTLIB changes after xcb addition and bump. 2009-08-10 06:29:51 +00:00
jolan
29d4b2a88e add conflict with net/aguri 2009-06-25 01:03:09 +00:00
wcmaier
39fb1f0eb0 Update to 1.50, fix email, use MODPY_EGG_VERSION, clean DEPENDS, regen patches. 2009-06-02 04:48:32 +00:00
jasper
fbf60a43ba - update nutdb to 14.4 2009-05-31 16:12:19 +00:00
sthen
0876f6e643 REGRESS_DEPENDS=${RUN_DEPENDS}; no package change 2009-05-19 10:35:19 +00:00
jasper
5a08fd2f41 - update nutdb to 14.3 
from benoit lecocq, with some tweaks
 2009-04-02 13:24:30 +00:00
naddy
849955ef09 fix link order for static linking 2009-03-24 14:51:04 +00:00
espie
a59532691d bump for python dep 2009-03-11 08:07:56 +00:00
kili
d6195c119a MODPY_EXPAT_DEPENDS doesn't exist any longer. 
While here, update PLISTs, some WANTLIBs, some license
markers and use MODPY_EGG_VERSION where it may help to
keep future PLIST diffs smaller.

help, nitpicking and ok jasper@, ok wcmaier@

note that print/py-reportlab/reportlab needs some more
love.
 2009-01-03 21:27:25 +00:00
jasper
95a4c7ce27 - update nutdb to 14.0 2008-10-24 12:25:29 +00:00
sthen
1a9efa54ec bump packages with Perl .so modules; the old ones don't work 
with new perl and the package signature doesn't change, so we
have to do this ourselves to make pkg_add updates work.

ok simon@
 2008-10-02 20:32:18 +00:00
jasper
13911bd3b9 - update emboss to the latest stable version, 6.0.1 2008-09-24 17:14:26 +00:00
jasper
ddfa68651b - add p5-Bio-ASN1-EntrezGene 2008-09-24 13:37:27 +00:00
jasper
ddc0be8edf import p5-Bio-ASN1-EntrezGene 1.091 
Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI
Entrez Gene genome databases
(http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene). It parses an
ASN.1-formatted Entrez Gene record and returns a data structure that
contains all data items from the gene record.
 2008-09-24 13:36:21 +00:00
jasper
3f7b1e2bf1 - update AcePerl to 1.91 
ok simon@
 2008-09-23 20:57:20 +00:00
jasper
09d4dc6d7e - update nutdb to 13.9 
- update HOMEPAGE
- remove maintainer who has been inactive/unresponsive for years
 2008-09-22 08:13:28 +00:00
jasper
ffb906e4e2 - update nutdb to 13.5 
maintainer time-out.
 2008-04-11 09:15:49 +00:00
jasper
1067ad1896 fix build on mips64. 
no bump, because !mips64 packages didn't change, and mips64 didn't package.

ok mbalmer@ (some time ago)
 2008-02-10 18:23:24 +00:00
okan
fc0db83b02 update to 1.44 from Will Maier (new MAINTAINER) 
ok merdely
 2008-01-12 02:00:24 +00:00
winiger
353c3a971f change dependency to flavored python product 
ok simon@,mbalmer@
 2008-01-11 09:25:59 +00:00
bernd
c26229397e emboss and pscan both install ${LOCALBASE}/bin/pscan. 
Add @conflict markers.
 2007-11-06 06:30:32 +00:00
ajacoutot
756427d1a0 - register egg-info file in PLIST 2007-11-02 10:10:11 +00:00
ajacoutot
137c1a3458 - bring ed(1) to the rescue ; it looks like my latest "fix" was too late 
(I will now hide...)

input by and ok pyr@
 2007-10-19 08:38:24 +00:00
ajacoutot
cb53492933 - oops, got bitten by CVS ; sorry about that 2007-10-19 06:44:36 +00:00
ajacoutot
064f8ab515 - really unbreak 
noticed by Stephan Andre' <andres at msu dot edu>, thanks!
 2007-10-18 20:56:59 +00:00
ajacoutot
da653f2cb9 - make it package again 
- bump (new python version)
 2007-10-18 15:22:15 +00:00
steven
cdb3268835 +emboss 2007-09-25 08:23:38 +00:00
steven
2f69c61a4a initial import of EMBOSS 5.0.0 
European Molecular Biology Open Software Suite
 2007-09-25 08:23:02 +00:00
sthen
d2f4eba081 ace.pl(1) manpage is generated but useless; @comment it to avoid 
"Couldn't find subject in old manpage /usr/local/man/man1/ace.pl.1
Unknown manpage type /usr/local/man/man1/ace.pl.1" at pkg_add.

P5ARCH is in base file sets anyway, remove from PLIST.

ok merdely@
 2007-09-18 23:36:54 +00:00
simon
e9d64e5841 remove surrounding quotes from COMMENT 2007-09-15 21:32:05 +00:00
jasper
be202ef2f9 update nutdb to 12.5 2007-06-11 21:02:40 +00:00
espie
807b2c46da shorten comment 2007-05-17 10:52:25 +00:00
espie
470294650d base64 distinfo with SHA256 2007-04-05 15:37:40 +00:00
martynas
74afee703e update to nutdb-12.4 
ok steven@
 2007-03-31 08:58:30 +00:00
jasper
85ee819f85 update nutdb to 12.3 2007-02-02 14:32:52 +00:00
jasper
b0fddd23c7 fix PKGNAME, noticed by Stuart Henderson 
regen patch while there.
 2007-01-31 13:43:27 +00:00
jasper
5a7554c2b7 update nutdb to 12.0 
(no response from maintainer)
 2006-11-30 17:38:27 +00:00
steven
26b92847b2 master site fixes 2006-07-13 07:43:40 +00:00
alek
215e64d3a2 Bump PKGNAME after recent python switch; regen PLIST 2006-06-03 09:23:14 +00:00
alek
440c0f2686 Fix build with python 2.4 
problem spotted and ok steven@
 2005-12-18 20:33:17 +00:00
alek
1d6d4168a4 Update to 1.41 2005-12-03 22:34:52 +00:00
bernd
f123e951b5 - Fix some file modes here as well. 
- update-patches while I'm here
- bump PKGNAME

ok niallo@
 2005-11-01 17:18:15 +00:00
xsa
2575f38933 job changed :-( so did work environment. 
drop maintainership as I do not often use those anymore...
 2005-10-25 18:37:14 +00:00
naddy
307564922b add missing description 2005-05-26 21:18:46 +00:00
alek
260ce5cd00 Add WANTLIB marker 2005-03-11 17:01:28 +00:00
espie
e6da792b99 +bioperl 2005-03-03 01:42:56 +00:00
espie
c0e8fe3062 bioperl is a big suite of perl modules and scripts for bioinformatics: 
sequence comparisons and interfaces to various biological databases.
 2005-03-03 01:42:12 +00:00
espie
39123c1737 add AcePerl modules 2005-03-03 00:11:47 +00:00
espie
ceb9f444a3 ACEDB is an OO database specialized in genome issues, 
AcePerl yields an interface to it.
 2005-03-03 00:10:54 +00:00
naddy
1463a06ce3 update to 10.15; from maintainer Jon Trembley <jon@brain-box.net> 2005-02-07 17:34:23 +00:00
espie
86482b9616 fix build when biopython is already installed. 2005-01-16 14:26:19 +00:00
naddy
199c30b4ac SIZE 2005-01-05 15:47:05 +00:00
sturm
a7022f3ea3 update to nutdb 10.12 
new recipe-guess algorithm

from maintainer Jon Trembley <jon at brain-box.net>
 2004-12-25 19:35:34 +00:00