openbsd-ports/biology/py-biopython/Makefile

# $OpenBSD: Makefile,v 1.12 2008/01/12 02:00:24 okan Exp $

SHARED_ONLY=	Yes
COMMENT=	Python tools for computational molecular biology

DISTNAME=	biopython-1.44
PKGNAME=	py-${DISTNAME}
CATEGORIES=	biology

HOMEPAGE=	http://www.biopython.org/

MAINTAINER=	Will Maier <willmaier@ml1.net>

# BSD-like 
PERMIT_PACKAGE_CDROM=	Yes
PERMIT_PACKAGE_FTP=	Yes
PERMIT_DISTFILES_CDROM= Yes
PERMIT_DISTFILES_FTP=	Yes

MASTER_SITES=	${HOMEPAGE}DIST/

MODULES=	lang/python
PY_FLAVOR=	python${MODPY_VERSION}

WANTLIB+=	stdc++

BUILD_DEPENDS=	${MODPY_EXPAT_DEPENDS} \
		::math/py-Numeric \
		::devel/swig
RUN_DEPENDS=	${MODPY_EXPAT_DEPENDS} \
		:py-mxDateTime-*-${PY_FLAVOR}:devel/py-mxDateTime,${PY_FLAVOR} \
		:py-Numeric-*:math/py-Numeric \
		:py-reportlab-*:print/py-reportlab/reportlab
REGRESS_DEPENDS=${RUN_DEPENDS}

CFLAGS+=	-fPIC

post-install:
	${INSTALL_DATA_DIR} ${PREFIX}/share/doc/py-biopython/
	${INSTALL_DATA_DIR} ${PREFIX}/share/examples/py-biopython/
	${INSTALL_DATA} ${WRKSRC}/Doc/*.txt ${PREFIX}/share/doc/py-biopython/
	cd ${WRKSRC}/Doc/examples; tar cf - * | \
		tar xf - -C ${PREFIX}/share/examples/py-biopython

do-regress: fake
	@cd ${WRKSRC}/Tests && \
		PYTHONPATH=${WRKINST}${MODPY_SITEPKG} \
		${MODPY_BIN} ./run_tests.py --no-gui

.include <bsd.port.mk>
update to 1.44 from Will Maier (new MAINTAINER) ok merdely 2008-01-11 21:00:24 -05:00			`# $OpenBSD: Makefile,v 1.12 2008/01/12 02:00:24 okan Exp $`
Import of py-biopython-1.24 The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ok sturm@. 2004-05-07 04:57:15 -04:00
new-style MODULES, PLIST. 2004-08-03 07:18:02 -04:00			`SHARED_ONLY= Yes`
remove surrounding quotes from COMMENT 2007-09-15 17:32:05 -04:00			`COMMENT= Python tools for computational molecular biology`
Import of py-biopython-1.24 The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ok sturm@. 2004-05-07 04:57:15 -04:00
update to 1.44 from Will Maier (new MAINTAINER) ok merdely 2008-01-11 21:00:24 -05:00			`DISTNAME= biopython-1.44`
			`PKGNAME= py-${DISTNAME}`
Import of py-biopython-1.24 The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ok sturm@. 2004-05-07 04:57:15 -04:00			`CATEGORIES= biology`

			`HOMEPAGE= http://www.biopython.org/`

update to 1.44 from Will Maier (new MAINTAINER) ok merdely 2008-01-11 21:00:24 -05:00			`MAINTAINER= Will Maier <willmaier@ml1.net>`

Import of py-biopython-1.24 The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ok sturm@. 2004-05-07 04:57:15 -04:00			`# BSD-like`
			`PERMIT_PACKAGE_CDROM= Yes`
			`PERMIT_PACKAGE_FTP= Yes`
			`PERMIT_DISTFILES_CDROM= Yes`
			`PERMIT_DISTFILES_FTP= Yes`

master site fixes 2006-07-13 03:43:40 -04:00			`MASTER_SITES= ${HOMEPAGE}DIST/`
Import of py-biopython-1.24 The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ok sturm@. 2004-05-07 04:57:15 -04:00
new-style MODULES, PLIST. 2004-08-03 07:18:02 -04:00			`MODULES= lang/python`
change dependency to flavored python product ok simon@,mbalmer@ 2008-01-11 04:25:59 -05:00			`PY_FLAVOR= python${MODPY_VERSION}`
Import of py-biopython-1.24 The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ok sturm@. 2004-05-07 04:57:15 -04:00
update to 1.44 from Will Maier (new MAINTAINER) ok merdely 2008-01-11 21:00:24 -05:00			`WANTLIB+= stdc++`

Update to 1.41 2005-12-03 17:34:52 -05:00			`BUILD_DEPENDS= ${MODPY_EXPAT_DEPENDS} \`
update to 1.44 from Will Maier (new MAINTAINER) ok merdely 2008-01-11 21:00:24 -05:00			`::math/py-Numeric \`
			`::devel/swig`
Update to 1.41 2005-12-03 17:34:52 -05:00			`RUN_DEPENDS= ${MODPY_EXPAT_DEPENDS} \`
change dependency to flavored python product ok simon@,mbalmer@ 2008-01-11 04:25:59 -05:00			`:py-mxDateTime-*-${PY_FLAVOR}:devel/py-mxDateTime,${PY_FLAVOR} \`
Update to 1.41 2005-12-03 17:34:52 -05:00			`:py-Numeric-*:math/py-Numeric \`
			`:py-reportlab-*:print/py-reportlab/reportlab`
Import of py-biopython-1.24 The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ok sturm@. 2004-05-07 04:57:15 -04:00			`REGRESS_DEPENDS=${RUN_DEPENDS}`

update to 1.44 from Will Maier (new MAINTAINER) ok merdely 2008-01-11 21:00:24 -05:00			`CFLAGS+= -fPIC`
- bring ed(1) to the rescue ; it looks like my latest "fix" was too late (I will now hide...) input by and ok pyr@ 2007-10-19 04:38:24 -04:00
Import of py-biopython-1.24 The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ok sturm@. 2004-05-07 04:57:15 -04:00			`post-install:`
update to 1.44 from Will Maier (new MAINTAINER) ok merdely 2008-01-11 21:00:24 -05:00			`${INSTALL_DATA_DIR} ${PREFIX}/share/doc/py-biopython/`
			`${INSTALL_DATA_DIR} ${PREFIX}/share/examples/py-biopython/`
			`${INSTALL_DATA} ${WRKSRC}/Doc/*.txt ${PREFIX}/share/doc/py-biopython/`
			`cd ${WRKSRC}/Doc/examples; tar cf - * \| \`
			`tar xf - -C ${PREFIX}/share/examples/py-biopython`
Import of py-biopython-1.24 The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ok sturm@. 2004-05-07 04:57:15 -04:00
			`do-regress: fake`
update to 1.44 from Will Maier (new MAINTAINER) ok merdely 2008-01-11 21:00:24 -05:00			`@cd ${WRKSRC}/Tests && \`
Import of py-biopython-1.24 The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ok sturm@. 2004-05-07 04:57:15 -04:00			`PYTHONPATH=${WRKINST}${MODPY_SITEPKG} \`
Update to 1.41 2005-12-03 17:34:52 -05:00			`${MODPY_BIN} ./run_tests.py --no-gui`
Import of py-biopython-1.24 The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. ok sturm@. 2004-05-07 04:57:15 -04:00
			`.include <bsd.port.mk>`