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abyss
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2022-09-07 23:58:51 +02:00 |
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ad2vcf
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2022-09-07 23:58:51 +02:00 |
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artemis
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2022-09-07 23:58:51 +02:00 |
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augustus
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biology/augustus: New port: Genome annotation tool
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2022-11-25 15:55:09 -08:00 |
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avida
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2022-09-07 23:58:51 +02:00 |
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babel
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2022-09-07 23:58:51 +02:00 |
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bamtools
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bamutil
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2022-09-07 23:58:51 +02:00 |
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barrnap
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biology/barrnap: Update descr
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2022-11-24 19:12:18 -08:00 |
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bbmap
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2022-09-07 23:58:51 +02:00 |
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bcftools
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2022-09-07 23:58:51 +02:00 |
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bedtools
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2022-09-07 23:58:51 +02:00 |
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bfc
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2022-09-07 23:58:51 +02:00 |
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bio-mocha
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bioawk
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biococoa
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biolibc
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biolibc-tools
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bioparser
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2022-09-07 23:58:51 +02:00 |
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biosig
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*/*: bump PORTREVISION after the upgrade of math/suitesparse*
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2022-11-27 12:09:57 +01:00 |
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biosoup
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biology/biosoup: Update g20201216 -> 0.10.0-2
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2022-10-10 23:10:56 -07:00 |
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biostar-tools
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2022-09-07 23:58:51 +02:00 |
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bolt-lmm
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2022-09-07 23:58:51 +02:00 |
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bowtie
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2022-09-07 23:58:51 +02:00 |
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bowtie2
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biology/bowtie2: fix build on powerpc64*
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2022-11-09 23:50:41 +01:00 |
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bwa
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2022-09-07 23:58:51 +02:00 |
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canu
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2022-09-07 23:58:51 +02:00 |
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cd-hit
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2022-09-07 23:58:51 +02:00 |
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cdbfasta
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checkm
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2022-09-07 23:58:51 +02:00 |
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clustal-omega
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clustalw
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2022-09-07 23:58:51 +02:00 |
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cufflinks
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2022-09-07 23:58:51 +02:00 |
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cytoscape
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biology/cytoscape: Fix build
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2022-11-26 11:37:22 -08:00 |
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ddocent
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2022-09-07 23:58:51 +02:00 |
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diamond
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2022-09-07 23:58:51 +02:00 |
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dsr-pdb
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edlib
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2022-09-07 23:58:51 +02:00 |
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emboss
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2022-09-07 23:58:51 +02:00 |
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erminej
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2022-09-07 23:58:51 +02:00 |
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exonerate
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2022-09-07 23:58:51 +02:00 |
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fasta
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2022-09-07 23:58:51 +02:00 |
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fasta3
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fastahack
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fastdnaml
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fastool
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fastp
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2022-09-07 23:58:51 +02:00 |
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fastq-trim
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2022-09-07 23:58:51 +02:00 |
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fastqc
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fasttree
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2022-09-07 23:58:51 +02:00 |
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fastx-toolkit
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2022-09-07 23:58:51 +02:00 |
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figtree
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2022-09-07 23:58:51 +02:00 |
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flash
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2022-09-07 23:58:51 +02:00 |
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fluctuate
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2022-09-07 23:58:51 +02:00 |
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freebayes
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2022-09-07 23:58:51 +02:00 |
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garlic
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2022-09-07 23:58:51 +02:00 |
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gatk
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biology/gatk: Update 4.2.6.1 -> 4.3.0.0
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2022-11-26 20:06:47 -08:00 |
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gcta
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2022-09-07 23:58:51 +02:00 |
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gemma
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generand
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gff2ps
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gffread
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gmap
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2022-09-07 23:58:51 +02:00 |
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gperiodic
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2022-09-07 23:58:51 +02:00 |
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graphlan
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2022-09-07 23:58:51 +02:00 |
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groopm
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2022-09-07 23:58:51 +02:00 |
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haplohseq
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2022-09-07 23:58:51 +02:00 |
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hhsuite
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biology/hhsuite: Disable on 32-bit architectures following upstream advice
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2022-10-01 11:16:04 -07:00 |
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hisat2
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2022-09-07 23:58:51 +02:00 |
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hmmer
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biology/hmmer: Update to 3.3.2
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2022-10-11 15:13:01 -05:00 |
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htslib
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2022-09-07 23:58:51 +02:00 |
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hyphy
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biology/hyphy: Not broken on systems where OpenMP isn't available
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2022-10-01 13:59:13 -07:00 |
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igv
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2022-09-07 23:58:51 +02:00 |
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infernal
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biology/infernal: Update to 1.1.4
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2022-10-12 11:15:54 +01:00 |
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iolib
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2022-09-07 23:58:51 +02:00 |
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iqtree
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2022-09-07 23:58:51 +02:00 |
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jalview
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biology/jalview: Update 2.11.1.4 -> 2.11.2.5
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2022-10-11 23:58:18 -07:00 |
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jellyfish
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2022-09-07 23:58:51 +02:00 |
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kallisto
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2022-09-07 23:58:51 +02:00 |
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kmcp
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all: Bump PORTREVISION after lang/go{118,119} update
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2022-10-06 14:24:26 -05:00 |
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lamarc
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2022-09-07 23:58:51 +02:00 |
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libbigwig
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2022-09-07 23:58:51 +02:00 |
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libcombine
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biology/libcombine: Update 0.2.19 -> 0.2.20
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2022-12-08 03:11:24 -08:00 |
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libgff
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2022-09-07 23:58:51 +02:00 |
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libgtextutils
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2022-09-07 23:58:51 +02:00 |
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libneurosim
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2022-09-07 23:58:51 +02:00 |
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libnuml
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2022-09-07 23:58:51 +02:00 |
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libsbml
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2022-09-07 23:58:51 +02:00 |
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libsedml
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2022-09-07 23:58:51 +02:00 |
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linux-foldingathome
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2022-09-07 23:58:51 +02:00 |
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mafft
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2022-09-07 23:58:51 +02:00 |
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mapm3
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2022-09-07 23:58:51 +02:00 |
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megahit
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biology/megahit: Add cmake patch to respect ports build flags
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2022-11-24 08:10:13 -06:00 |
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metaeuk
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biology/metaeuk: Broken on systems where OpenMP isn't enabled
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2022-12-02 20:00:49 -08:00 |
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migrate
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2022-09-07 23:58:51 +02:00 |
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minimap2
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2022-09-07 23:58:51 +02:00 |
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mmseqs2
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2022-09-07 23:58:51 +02:00 |
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molden
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2022-09-07 23:58:51 +02:00 |
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mothur
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2022-09-07 23:58:51 +02:00 |
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mrbayes
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2022-09-07 23:58:51 +02:00 |
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mummer
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2022-09-07 23:58:51 +02:00 |
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muscle
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2022-09-07 23:58:51 +02:00 |
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ncbi-blast+
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devel/grpc: Update to 1.49.0
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2022-10-03 10:14:06 +08:00 |
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ncbi-cxx-toolkit
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graphics/proj: Update to 9.1.0
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2022-11-17 09:20:57 +01:00 |
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ncbi-entrez-direct
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all: Bump PORTREVISION after lang/go{118,119} update
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2022-10-06 14:24:26 -05:00 |
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ncbi-toolkit
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*/*: Bump PORTREVISION for consumers of libunistring
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2022-10-22 11:36:07 +02:00 |
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ncbi-vdb
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2022-09-07 23:58:51 +02:00 |
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ngs-sdk
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2022-09-07 23:58:51 +02:00 |
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p5-AcePerl
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Cluster
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p5-Bio-Coordinate
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-DB-EMBL
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p5-Bio-DB-NCBIHelper
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p5-Bio-FeatureIO
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p5-Bio-GFF3
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p5-Bio-Glite
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p5-Bio-Graphics
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p5-Bio-MAGETAB
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p5-Bio-NEXUS
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p5-Bio-Phylo
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p5-Bio-SCF
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p5-Bio-Variation
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p5-BioPerl
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p5-BioPerl-Run
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p5-transdecoder
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p5-TrimGalore
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2022-09-07 23:58:51 +02:00 |
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paml
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biology/paml: Update to 4.10.6
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2022-11-12 22:35:29 -04:00 |
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pbbam
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2022-09-07 23:58:51 +02:00 |
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pbseqan
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peak-classifier
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pear-merger
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phrap
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phred
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phyml
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2022-09-07 23:58:51 +02:00 |
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picard-tools
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plink
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pooler
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primer3
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prodigal
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prodigy-lig
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protomol
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2022-09-07 23:58:51 +02:00 |
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psi88
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2022-09-08 17:46:38 +02:00 |
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py-bcbio-gff
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2022-09-07 23:58:51 +02:00 |
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py-biom-format
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2022-09-07 23:58:51 +02:00 |
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py-biopython
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biology/py-biopython: Update to 1.80
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2022-12-05 19:45:16 +08:00 |
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py-bx-python
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2022-09-07 23:58:51 +02:00 |
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py-crossmap
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py-cutadapt
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py-deeptools
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py-deeptoolsintervals
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py-dna-features-viewer
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py-dnaio
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py-ete3
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py-Genesis-PyAPI
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py-gffutils
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py-goatools
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py-gtfparse
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py-hits
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py-libnuml
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py-libsedml
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py-loompy
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py-macs2
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2022-09-07 23:58:51 +02:00 |
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py-mrcfile
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biology/py-mrcfile: Update 1.4.2 -> 1.4.3
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2022-09-24 14:54:24 -07:00 |
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py-multiqc
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py-ont-fast5-api
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2022-09-07 23:58:51 +02:00 |
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py-orange3-bioinformatics
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Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"
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2022-12-06 12:12:04 +01:00 |
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py-orange3-single-cell
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Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"
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2022-12-06 12:12:04 +01:00 |
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py-pandas-charm
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py-py2bit
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py-pybigwig
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py-pyfaidx
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2022-09-07 23:58:51 +02:00 |
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py-pyrodigal
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biology/py-pyrodigal: New port: Python binding for Prodigal, an ORF finder for genomes and metagenomes
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2022-12-06 07:41:19 -08:00 |
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py-pysam
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biology/py-pysam: Update 0.19.1 -> 0.20.0
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2022-11-10 09:36:45 -08:00 |
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py-PySCeS
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biology/py-PySCeS: Update 1.0.2 -> 1.0.3
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2022-09-26 01:18:31 -07:00 |
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py-python-libsbml
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*/*: Update path set in BUILD_DEPENDS for CMake
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2022-09-09 22:32:24 +02:00 |
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py-pywgsim
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py-resdk
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py-scikit-bio
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2022-09-07 23:58:51 +02:00 |
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py-valerius
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biology/py-valerius: New port: Python bioinformatics tools
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2022-10-03 21:06:22 -07:00 |
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py-xenaPython
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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pyfasta
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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python-nexus
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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rainbow
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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rampler
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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readseq
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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recombine
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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ruby-bio
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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rubygem-bio
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biology/rubygem-bio: Update to 2.0.4
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2022-10-03 10:17:49 +08:00 |
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rubygem-bio-executables
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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rubygem-bio-old-biofetch-emulator
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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rubygem-bio-shell
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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sam2pairwise
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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samtools
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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scrm
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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seaview
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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seqan
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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seqan1
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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seqan3
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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seqan-apps
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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seqio
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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seqkit
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all: Bump PORTREVISION after lang/go{118,119} update
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2022-10-06 14:24:26 -05:00 |
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seqtk
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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sigviewer
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Mk/Uses: always use colon for build/run suffix
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2022-09-11 12:20:14 +02:00 |
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sim4
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Remove WWW lines that have been moved into Makefiles
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2022-09-08 17:46:38 +02:00 |
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slclust
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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smithwaterman
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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snpeff
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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spoa
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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sra-tools
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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stacks
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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star
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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stringtie
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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subread
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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tabixpp
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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taxonkit
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biology/taxonkit: Update 0.13.0 -> 0.14.0
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2022-11-29 01:18:47 -08:00 |
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treekin
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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treepuzzle
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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trimadap
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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trimmomatic
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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tRNAscan-SE
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biology/tRNAscan-SE: Update to 2.0.11
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2022-10-12 12:45:24 +01:00 |
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ucsc-userapps
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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ugene
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Mk/Uses: always use colon for build/run suffix
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2022-09-11 12:20:14 +02:00 |
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unikmer
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all: Bump PORTREVISION after lang/go{118,119} update
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2022-10-06 14:24:26 -05:00 |
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vcf2hap
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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vcf-split
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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vcflib
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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vcftools
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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velvet
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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viennarna
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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vsearch
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biology/vsearch: Update to 2.22.1
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2022-09-21 11:24:14 -05:00 |
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vt
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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wise
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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Makefile
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biology/py-pyrodigal: New port: Python binding for Prodigal, an ORF finder for genomes and metagenomes
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2022-12-06 07:41:19 -08:00 |
