freebsd-ports/biology
Raphael Kubo da Costa 26b977f43a Fix shebang line in Perl and Python scripts.
PR:		191146
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
2014-06-20 12:54:29 +00:00
..
ariadne
artemis
avida
babel
biococoa
biojava - add stage support 2014-06-01 10:37:22 +00:00
blast biology/blast: Deprecate for removal after 4 September 2014 2014-06-19 11:55:50 +00:00
blat Convert b* to USES=zip 2014-03-07 15:52:40 +00:00
boinc-simap
chemeq
clustalw Multiple ports: reset maintainers 2014-05-26 02:33:38 +00:00
consed Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
crux Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
embassy biology/embassy: specify post-extraction with ${TAR} 2014-05-29 10:47:58 +00:00
emboss Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
fasta - Add staging support 2014-03-24 09:01:39 +00:00
fasta3 biology/fasta3: Checked new distfile and regenerated distinfo to unbreak 2014-03-02 10:58:50 +00:00
fastdnaml
fluctuate
garlic - Convert USE_GMAKE to USES 2014-03-13 07:41:34 +00:00
gff2ps Add staging support 2014-03-23 17:43:41 +00:00
gmap
gperiodic Add staging support 2014-03-23 18:09:23 +00:00
grappa
hmmer
iolib - I forgot to svn add a new patch 2014-05-31 18:03:08 +00:00
jalview
lagan
lamarc
libsbml - Update to 5.10.0 2014-05-13 07:04:17 +00:00
linux-foldingathome
mafft Add DOCS and EXAMPLE options to biology/mafft 2014-05-31 04:18:18 +00:00
mapm3
migrate
molden Catch a couple of missing convertsion to :tu/:tl 2014-05-05 11:15:53 +00:00
mopac - Add staging support 2014-03-23 18:10:41 +00:00
mrbayes
mummer Reset the 99 ports still listed under sylvio@ 2014-06-11 18:55:29 +00:00
muscle Update to 3.8.31. 2014-06-17 21:36:06 +00:00
ncbi-toolkit Add staging support 2014-03-23 20:50:54 +00:00
njplot - add stage support 2014-06-01 11:26:39 +00:00
ortep3 Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
p5-AcePerl Remove all the bootstrap files (.bs) from the plists. 2014-06-10 12:14:12 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3 - Fix PLIST 2014-03-26 14:23:09 +00:00
p5-Bio-Glite
p5-Bio-Graphics Stagify, remove BROKEN. 2014-06-07 01:54:41 +00:00
p5-Bio-MAGETAB - update to 1.31 2014-05-16 13:33:02 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF Remove all the bootstrap files (.bs) from the plists. 2014-06-10 12:14:12 +00:00
p5-bioperl - Update to 1.6.923 2014-05-30 15:46:05 +00:00
p5-bioperl-run Mark BROKEN: Fails to configure 2014-06-19 21:31:16 +00:00
paml - Update to 4.8 2014-04-05 10:56:52 +00:00
phd2fasta Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
phrap Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
phred Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
phylip The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
phyml
platon Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
plink Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
plinkseq Convert to dos2unix 2014-03-07 11:37:35 +00:00
povchem
primer3 Quote ${CC} and similar variables in MAKE_ARGS. 2014-05-20 19:32:39 +00:00
protomol The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
psi88 Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-biopython - Stage 2014-04-27 01:59:47 +00:00
pycogent - Stage support [1] 2014-05-02 14:00:13 +00:00
pyfasta - Update to 0.5.2 2014-04-06 04:05:43 +00:00
pymol The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
python-nexus Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
recombine - Support staging 2014-02-16 11:39:42 +00:00
ruby-bio Support stage 2014-04-07 13:01:26 +00:00
seaview - Update to 4.5.2 2014-06-04 06:28:56 +00:00
seqan - add stage support 2014-06-01 11:42:17 +00:00
seqio Support staging 2014-02-16 11:42:09 +00:00
seqtools Remove all space characters from Makefile assignments. 2014-06-08 19:51:27 +00:00
sim4 Support staging 2014-02-16 11:43:07 +00:00
ssaha biology/ssaha: undeprecate, this port fetches and builds fine. 2014-03-09 09:39:50 +00:00
t_coffee Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
tinker - Un-break fetch stage: the name scheme of the source tarballs has changed 2014-04-22 19:28:18 +00:00
treepuzzle
treeviewx Unbreak 2014-06-04 20:08:15 +00:00
tRNAscan-SE Support stage 2014-05-05 10:26:15 +00:00
ugene Update to version 1.13.1. 2014-03-07 07:39:20 +00:00
velvet Fix shebang line in Perl and Python scripts. 2014-06-20 12:54:29 +00:00
wise - Add staging support 2014-03-24 10:46:35 +00:00
xmolwt Add staging support 2014-03-24 11:06:56 +00:00
Makefile Remove expired ports: 2014-04-18 11:17:45 +00:00