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Fix shebang line in Perl and Python scripts.

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PR:		191146
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
This commit is contained in:
Raphael Kubo da Costa 2014-06-20 12:54:29 +00:00
parent 0b880ce2d8
commit 26b977f43a
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=358567
1 changed files with 6 additions and 13 deletions
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19
biology/velvet/Makefile
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@ -3,6 +3,7 @@
PORTNAME= velvet
PORTVERSION= 1.2.10
PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= http://www.ebi.ac.uk/~zerbino/velvet/
DISTNAME= ${PORTNAME}_${PORTVERSION}
@ -17,11 +18,11 @@ MAXKMERLENGTH?= 31
VELVET_CATEGORIES?= 2
MAKE_ENV+= MAXKMERLENGTH=${MAXKMERLENGTH} CATEGORIES=${VELVET_CATEGORIES}
USES= perl5 gmake
USES= perl5 gmake shebangfix
USE_PERL5= run
BINARIES= velvetg velveth
SCRIPTS= contrib/shuffleSequences_fasta/shuffleSequences_fasta.pl \
SHEBANG_FILES= contrib/shuffleSequences_fasta/shuffleSequences_fasta.pl \
contrib/shuffleSequences_fasta/shuffleSequences_fastq.pl \
contrib/VelvetOptimiser-2.2.4/VelvetOptimiser.pl \
contrib/afg_handling/asmbly_splitter.pl \
@ -44,10 +45,10 @@ PERLMOD_FILES= contrib/VelvetOptimiser-2.2.4/VelvetOpt/Assembly.pm \
.if !defined(WITHOUT_PYTHON)
USE_PYTHON= yes
SCRIPTS+= contrib/AssemblyAssembler1.3/AssemblyAssembler1.3.py
SHEBANG_FILES+= contrib/AssemblyAssembler1.3/AssemblyAssembler1.3.py
.endif
.for f in ${BINARIES} ${SCRIPTS}
.for f in ${BINARIES} ${SHEBANG_FILES}
PLIST_FILES+= bin/${f:T}
.endfor
.for d in ${PERLMOD_DIRS}
@ -63,19 +64,11 @@ OPTIONS_DEFINE= DOCS
.include <bsd.port.options.mk>
post-patch:
.for f in ${SCRIPTS}
${REINPLACE_CMD} -e s,#!/usr/bin/perl,${PERL}, ${WRKSRC}/${f}
.endfor
.if !defined(WITHOUT_PYTHON)
${REINPLACE_CMD} -e s,#!/usr/bin/python,${PYTHON_CMD}, ${WRKSRC}/contrib/AssemblyAssembler1.3/AssemblyAssembler1.3.py
.endif
do-install:
.for f in ${BINARIES}
${INSTALL_PROGRAM} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin
.endfor
.for f in ${SCRIPTS}
.for f in ${SHEBANG_FILES}
${INSTALL_SCRIPT} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin/${f:T}
.endfor
.for d in ${PERLMOD_DIRS}