Mikhail Teterin 05b84dd275 Unbreak by upgrading to March 5, 2015 "release" from upstream. ... Reduce restrictions from RESTRICTED to NO_CDROM -- the licensing allows use by academic community as long as it is not redistributed. Upstream still do not version their "releases", so next time they reroll the tarball, the download will start breaking again. But this time, it will be possible to fetch it from FreeBSD mirrors. Hide most of the optional data files under the DOCS-option and streamline various build-related scriptlets.		2015-03-08 23:13:21 +00:00
..
ariadne	misc/otter & biology/ariadne: Not jobs safe	2015-01-21 18:39:11 +00:00
artemis
avida	Cleanup plist	2014-12-20 17:27:08 +00:00
babel
biococoa
biojava
blat	Update to upstream version 36	2015-01-01 18:17:53 +00:00
chemeq
clustalw
consed
crux
emboss	Bump portrevision after png update	2014-12-25 20:54:41 +00:00
fasta
fasta3
fastdnaml
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer
htslib	biology/htslib: update 1.1 -> 1.2.1	2015-03-06 12:45:22 +00:00
iolib	- Update to 1.13.10	2015-03-04 13:17:46 +00:00
jalview
lagan
lamarc
libsbml	- Convert USE_PYTHON -> USES leftovers missed in the previous commits	2015-01-04 08:23:23 +00:00
linux-foldingathome	Cleanup plist	2014-12-20 17:27:08 +00:00
mafft
mapm3
migrate	- Update to 3.6.6	2015-01-31 06:35:24 +00:00
molden
mopac	- Upadate biology/mopac to version 1.15	2014-12-16 22:10:23 +00:00
mrbayes
mummer
muscle
ncbi-blast+	Add a run dependency used by update_blastdb.pl	2015-03-06 10:39:31 +00:00
ncbi-toolkit
njplot
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite	Remove TEST dependency on p5-Test-Simple when the version in core is	2015-02-26 16:54:41 +00:00
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run	- Simplify Makefile	2015-01-18 22:49:09 +00:00
paml	- Pass maintainership to submitter	2015-01-19 12:11:25 +00:00
phrap
phred
phylip
phyml	Convert to USES=autoreconf	2014-12-28 19:14:13 +00:00
platon	Unbreak by upgrading to March 5, 2015 "release" from upstream.	2015-03-08 23:13:21 +00:00
plink
plinkseq
povchem	Cleanup plist	2014-12-20 17:27:08 +00:00
primer3
protomol	Bump portrevision after png update	2014-12-25 20:54:41 +00:00
psi88
py-biopython	biology/py-biopython:	2015-01-19 20:21:12 +00:00
pycogent
pyfasta
python-nexus
recombine
ruby-bio
samtools	biology/samtools: update 1.1 -> 1.2	2015-03-06 12:53:58 +00:00
seaview	Mark BROKEN: Fails to link, tries to use internal fltk symbols	2015-02-21 07:35:32 +00:00
seqan
seqio
seqtools	biology/seqtools: 4.31 -> 4.32	2015-02-12 12:04:09 +00:00
sim4
ssaha	Cleanup plist	2014-12-20 17:27:08 +00:00
t_coffee	Remove Authors from pkg-descr	2015-03-02 23:09:43 +00:00
tinker	Unbreak by updating from 7.0.1 to 7.1.1. Hopefully, the authors will	2015-03-08 18:34:42 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene	Update Unipro UGENE to version 1.16.0 (documentation was also rerolled).	2015-02-24 11:42:53 +00:00
velvet	Designatate 4 ports as unsafe for parallel building	2015-01-19 17:43:57 +00:00
wise	Cleanup plist	2014-12-20 17:27:08 +00:00
xmolwt
Makefile	Remove expired ports:	2015-01-01 01:13:11 +00:00