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freebsd-ports/biology
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Rene Ladan aadb2b3941 biology/boinc-simap: Deprecate, project shutting down on 2015-01-01 
Obtained from:	http://boincsimap.org/boincsimap/forum_thread.php?id=88
2014-09-19 23:05:44 +00:00
..
ariadne Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
artemis
avida
babel Rename biology/ patch-xy patches to reflect the files they modify. 2014-07-28 14:22:16 +00:00
biococoa Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
biojava - add stage support 2014-06-01 10:37:22 +00:00
blat Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk 2014-06-25 08:55:55 +00:00
boinc-simap biology/boinc-simap: Deprecate, project shutting down on 2015-01-01 2014-09-19 23:05:44 +00:00
chemeq
clustalw Multiple ports: reset maintainers 2014-05-26 02:33:38 +00:00
consed update ports: 2014-08-23 18:04:58 +00:00
crux Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
emboss Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
fasta
fasta3
fastdnaml
fluctuate
garlic biology/garlic: Stage properly to unbreak 2014-07-17 10:13:06 +00:00
gff2ps
gmap Fix MASTER_SITES 2014-09-05 09:25:45 +00:00
gperiodic
grappa
hmmer Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS. 2014-07-15 14:54:54 +00:00
iolib - I forgot to svn add a new patch 2014-05-31 18:03:08 +00:00
jalview
lagan
lamarc
libsbml - Update to 5.10.2 2014-08-10 06:21:53 +00:00
linux-foldingathome Stagify. 2014-07-06 16:05:34 +00:00
mafft Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
mapm3
migrate
molden Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
mopac - Switch to USES=libtool, drop .la files 2014-08-06 16:05:49 +00:00
mrbayes Fix build on -current by un-clobbering LDFLAGS. Also, don't 2014-08-15 16:37:37 +00:00
mummer biology/mummer: Use OPSYS with OSVERSION 2014-07-19 22:00:16 +00:00
muscle Update to 3.8.31. 2014-06-17 21:36:06 +00:00
ncbi-toolkit
njplot - add stage support 2014-06-01 11:26:39 +00:00
ortep3 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
p5-AcePerl Fix build. Hopefully it doesn't break the app. 2014-08-22 00:33:16 +00:00
p5-Bio-ASN1-EntrezGene Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics Really fix. 2014-07-25 23:08:58 +00:00
p5-Bio-MAGETAB - update to 1.31 2014-05-16 13:33:02 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF Remove all the bootstrap files (.bs) from the plists. 2014-06-10 12:14:12 +00:00
p5-bioperl biology/p5-bioperl: fix pkg-descr sidenote link 2014-08-04 04:32:38 +00:00
p5-bioperl-run biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagify 2014-08-04 08:54:10 +00:00
paml Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
phrap update ports: 2014-08-23 18:04:58 +00:00
phred update ports: 2014-08-23 18:04:58 +00:00
phylip
phyml
platon Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
plink Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
plinkseq - Switch to USES=libtool, drop .la files 2014-07-22 22:12:15 +00:00
povchem Rename biology/ patch-xy patches to reflect the files they modify. 2014-07-28 14:22:16 +00:00
primer3 Quote ${CC} and similar variables in MAKE_ARGS. 2014-05-20 19:32:39 +00:00
protomol Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
psi88 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-biopython Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
pycogent Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
pyfasta Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
python-nexus Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
recombine
ruby-bio
seaview Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
seqan Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
seqio
seqtools USES=execinfo 2014-08-04 23:06:21 +00:00
sim4
ssaha
t_coffee Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
tinker Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
treepuzzle
treeviewx Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
tRNAscan-SE Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
ugene Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
velvet Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
wise
xmolwt devel/glib12 x11-toolkits/gtk12: 2014-09-13 15:11:27 +00:00
Makefile Second run at cleaning out non staged ports without pending PR 2014-09-02 12:45:01 +00:00