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artemis
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avida
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babel
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bamtools
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bcftools
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bedtools
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biococoa
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bowtie
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biology/bowtie: Patch for gcc8 and clean up
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2018-11-03 23:24:29 +00:00 |
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bowtie2
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Update devel/tbb to version 2019.1 and bump dependent ports' revisions
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2018-10-11 14:47:13 +00:00 |
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bwa
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canu
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biology/canu: Upgrade to 1.8, add experimental SLURM integration
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2018-11-04 14:29:02 +00:00 |
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cd-hit
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cdbfasta
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chemeq
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clustal-omega
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clustalw
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clustalx
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consed
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cytoscape
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ddocent
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diamond
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emboss
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exonerate
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fasta
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fasta3
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fastahack
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fastdnaml
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fastool
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fastqc
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fasttree
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fastx-toolkit
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fluctuate
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freebayes
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garlic
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gff2ps
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gmap
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gperiodic
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grappa
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hmmer
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htslib
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hyphy
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biology/hyphy: Update to version 2.3.14.16
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2018-10-20 12:21:15 +00:00 |
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igv
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biology/igv: Update 2.4.10 -> 2.4.15
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2018-11-04 22:55:24 +00:00 |
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infernal
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iolib
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Remove the incorrect typedefs to fix build on tier-2.
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2018-11-05 19:45:23 +00:00 |
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iqtree
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biology/iqtree: Update to version 1.6.8
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2018-10-28 22:00:18 +00:00 |
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jalview
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jellyfish
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kallisto
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lagan
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lamarc
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libgtextutils
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libsbml
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linux-foldingathome
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mafft
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mapm3
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migrate
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molden
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biology/molden: Unbreak: fix the problem that it can't find libgcc_s.so from gcc
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2018-11-07 00:03:34 +00:00 |
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mopac
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mrbayes
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mummer
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muscle
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ncbi-blast+
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ncbi-cxx-toolkit
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New port: biology/ncbi-cxx-toolkit: NCBI C++ Toolkit
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2018-10-08 07:54:49 +00:00 |
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ncbi-toolkit
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Fix build failure with base GCC because of double typedefs.
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2018-11-05 19:47:42 +00:00 |
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ngs-sdk
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biology/ngs-sdk: Update 2.9.2 -> 2.9.3
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2018-10-18 21:38:21 +00:00 |
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njplot
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p5-AcePerl
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-ASN1-EntrezGene
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Update to 1.73
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2018-10-10 10:23:10 +00:00 |
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p5-Bio-Coordinate
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-Das
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-Das-Lite
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-FeatureIO
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-GFF3
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-Glite
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-Graphics
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-MAGETAB
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-NEXUS
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-Phylo
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-SCF
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-BioPerl
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-BioPerl-Run
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-transdecoder
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biology/p5-transdecoder: Upgrade to 5.4.0
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2018-10-23 12:51:20 +00:00 |
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p5-TrimGalore
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paml
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pbbam
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pbcopper
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pbseqan
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pear-merger
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phrap
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phred
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phylip
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phyml
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plinkseq
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primer3
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protomol
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psi88
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py-biom-format
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biology/py-biom-format: Update to version 2.1.7
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2018-10-06 15:28:01 +00:00 |
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py-biopython
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py-bx-python
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py-cutadapt
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py-Genesis-PyAPI
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py-gffutils
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New port: biology/py-gffutils: Work with GFF and GTF files in a flexible database framework
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2018-10-19 02:06:53 +00:00 |
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py-gtfparse
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New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) files
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2018-10-19 02:03:40 +00:00 |
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py-loompy
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biology/py-loompy: Update 2.0.15 -> 2.0.16
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2018-10-30 05:57:43 +00:00 |
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py-macs2
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py-orange3-bioinformatics
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biology/py-orange3-bioinformatics: Update 3.2.0 -> 3.2.2
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2018-10-14 03:22:49 +00:00 |
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py-orange3-single-cell
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biology/py-orange3-single-cell: Update 0.8.1 -> 0.8.2
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2018-10-17 07:31:34 +00:00 |
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py-pyfaidx
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biology/py-pyfaidx: Update 0.5.5.1 -> 0.5.5.2
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2018-10-28 04:34:14 +00:00 |
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py-pysam
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pycogent
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pyfasta
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python-nexus
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rainbow
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recombine
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ruby-bio
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rubygem-bio
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samtools
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seaview
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seqan
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seqan1
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seqan-apps
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biology/seqan-apps: fix build with GCC-based architectures
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2018-11-09 21:37:01 +00:00 |
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seqio
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seqtk
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seqtools
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sim4
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slclust
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smithwaterman
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stacks
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Fix build with tier-2 arches.
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2018-10-28 08:58:00 +00:00 |
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stringtie
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t_coffee
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tabixpp
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treepuzzle
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trimadap
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trimmomatic
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tRNAscan-SE
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- Unbreak by adding missing pkg-plist
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2018-09-28 00:12:48 +00:00 |
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ugene
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unanimity
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vcflib
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vcftools
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velvet
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wise
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xmolwt
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Deprecate most glib12 consumers
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2018-10-12 09:19:04 +00:00 |
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Makefile
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New port: biology/py-gffutils: Work with GFF and GTF files in a flexible database framework
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2018-10-19 02:06:53 +00:00 |
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