New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) files

svn path=/head/; revision=482398

biology/Makefile

@@ -104,6 +104,7 @@
     SUBDIR += py-biopython
     SUBDIR += py-bx-python
     SUBDIR += py-cutadapt
+    SUBDIR += py-gtfparse
     SUBDIR += py-loompy
     SUBDIR += py-macs2
     SUBDIR += py-orange3-bioinformatics

biology/py-gtfparse/Makefile

@@ -0,0 +1,22 @@
+# $FreeBSD$
+
+PORTNAME=	gtfparse
+DISTVERSION=	1.2.0
+CATEGORIES=	biology python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Parsing tools for GTF (gene transfer format) files
+
+LICENSE=	APACHE20
+
+RUN_DEPENDS=	${PYNUMPY} \
+		${PYTHON_PKGNAMEPREFIX}pandas>=0.15:math/py-pandas@${PY_FLAVOR}
+
+USES=		python
+USE_PYTHON=	distutils autoplist
+
+NO_ARCH=	yes
+
+.include <bsd.port.mk>

biology/py-gtfparse/distinfo

@@ -0,0 +1,3 @@
+TIMESTAMP = 1539913049
+SHA256 (gtfparse-1.2.0.tar.gz) = 2f27aa2b87eb43d613edabf27f9c11147dc595c8683b440ac1d88e9acdb85873
+SIZE (gtfparse-1.2.0.tar.gz) = 12601

biology/py-gtfparse/pkg-descr

@@ -0,0 +1,6 @@
+Tools to parse files in GTF (gene transfer format).
+
+GTF is a common format to exchange large portions of, or entire genotype
+information.
+
+WWW: https://github.com/openvax/gtfparse