freebsd-ports/biology/trimadap/pkg-descr
Jason W. Bacon 9db7a5f181 biology/trimadap: Trim adapter sequences from Illumina data
Reviewed by:    mat
Approved by:    jrm
Differential Revision:  https://reviews.freebsd.org/D14935
2018-04-03 18:23:54 +00:00

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Trimadap is a small tool to trim adapter sequences from Illumina data. It
performs SSE2-SW between each read and each adapter sequence and identifies
adapter sequences with a few heuristic rules which can be found in the
ta_trim1() function in trimadap-mt.c. The default adapters it uses are included
in illumina.txt. These are typical Illumina adapters from paired-end
sequencing.
WWW: https://github.com/lh3/trimadap