4e74668975
L-Breeder is currently marked unfetchable: http://people.freebsd.org/~fenner/portsurvey/biology.html#L-Breeder So I tried to investigate the problem and I'm now submitting my homework so it doesn't get lost. This is what I noticed: i) L-Breeder upstream sources have "stagnated for some time, but now a new simplified version is available" (sic, from the web site) So, the fetch issue is resolved. And the pkg-descr is also updated to reflect the new home page. However: ii) L-Breeder is now called LBreeder. I have changed PORTNAME to reflect this, although I don't know if this is the right thing to do. Should the port be moved to biology/LBreeder? Or perhaps just leaving PORTNAME pointing to the old name and then work inside the Makefile to point the build/install to the correct name? iii) the sources have been reorganized so I have to update the port's Makefile to reflect this. The attached patch works for me under FreeBSD-4.11 (although it's possible that I may have missed a dependency if I already have a required library installed in my box. Sorry, I don't have a tinderbox-like setup to test builds) iv) the program does not have a version number, nor did I find one by looking inside the sources. To avoid changing too much the port I just left PORTVERSION at 1.0 and bumped PORTREVISION to 6 Finally, do note that I am not a user of LBreeder, so I cannot test the program myself. I just noticed that by calling the executable I get a black X screen, that I can quit by pressing 'q' as documented in Readme.txt, but I can't tell myself if this is the expected behaviour. Nor do I know how to use the example files. Caveat emptor. PR: ports/90073 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: maintainer timeout |
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ariadne | ||
artemis | ||
avida | ||
babel | ||
biojava | ||
blast | ||
chemeq | ||
clustalw | ||
coalesce | ||
crimap | ||
deft | ||
distribfold | ||
dna-qc | ||
embassy | ||
emboss | ||
fasta | ||
fasta3 | ||
fastdnaml | ||
finchtv | ||
flip | ||
fluctuate | ||
garlic | ||
genpak | ||
gff2ps | ||
gperiodic | ||
grappa | ||
hmmer | ||
kinemage | ||
L-Breeder | ||
lamarc | ||
libgenome | ||
lsysexp | ||
migrate | ||
molden | ||
mopac | ||
nab | ||
ncbi-toolkit | ||
ortep3 | ||
p5-AcePerl | ||
p5-Bio-ASN1-EntrezGene | ||
p5-Bio-Das | ||
p5-bioperl | ||
p5-bioperl-devel | ||
paml | ||
phylip | ||
platon | ||
povchem | ||
primer3 | ||
psi88 | ||
py-biopython | ||
pymol | ||
rasmol | ||
recombine | ||
ruby-bio | ||
seaview | ||
seqio | ||
sim4 | ||
t_coffee | ||
tinker | ||
treepuzzle | ||
treeviewx | ||
tRNAscan-SE | ||
wise | ||
xdrawchem | ||
xmolwt | ||
Makefile |