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- New upstream version; two patches incorporated.

Browse Source 
PR:		90140
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
This commit is contained in:
Tim Bishop 2005-12-10 14:04:33 +00:00
parent 052856aacf
commit b9073575f7
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=150790
5 changed files with 9 additions and 39 deletions
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8
biology/seaview/Makefile
View File

@ -7,7 +7,7 @@
#
PORTNAME= seaview
PORTVERSION= 2005.13.07
PORTVERSION= 2006.01.01
CATEGORIES= biology
MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/
DISTNAME= ${PORTNAME}
@ -27,12 +27,12 @@ EXTRACT_BEFORE_ARGS= #
ALL_TARGET= ${PORTNAME}
CFLAGS+= -D HAVE_DIRENT_H \
-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/seaview/seaview.help
-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/${PORTNAME}/seaview.help
do-install:
@${INSTALL_PROGRAM} ${WRKSRC}/${DISTNAME} ${PREFIX}/bin
@${INSTALL_SCRIPT} ${WRKSRC}/seaview_align.sh ${PREFIX}/bin
@${MKDIR} ${PREFIX}/lib/X11/seaview
@${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/seaview
@${MKDIR} ${PREFIX}/lib/X11/${PORTNAME}
@${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/${PORTNAME}
.include <bsd.port.mk>

6
biology/seaview/distinfo
View File

@ -1,3 +1,3 @@
MD5 (seaview-2005.13.07/seaview.tar) = 0971b3485351f6a1f56a7b56ead2359c
SHA256 (seaview-2005.13.07/seaview.tar) = 7f48c494e5bee5dacef28bab2a52eab8aff6b66ceff8fab47fe77a18de376fc5
SIZE (seaview-2005.13.07/seaview.tar) = 595968
MD5 (seaview-2006.01.01/seaview.tar) = 4d1d1406f5d9ae0a0edad7144742143b
SHA256 (seaview-2006.01.01/seaview.tar) = ced1844ca3fc8181a9c811079dbc8e2ee67242ef49be113f761abad034ba8ba3
SIZE (seaview-2006.01.01/seaview.tar) = 595968

4
biology/seaview/files/patch-Makefile
View File

@ -1,5 +1,5 @@
--- Makefile.orig Wed Apr 6 05:54:30 2005
+++ Makefile Mon Dec 5 08:31:05 2005
+++ Makefile Fri Dec 9 07:41:26 2005
@@ -1,18 +1,15 @@
-FLTK = ../fltk
-PDF = ../PDFlib-Lite-6.0.1/libs/pdflib
@ -7,7 +7,7 @@
CXX = g++
-CFLAGS = -Dunix -U__APPLE__ -c $(OPT) -I$(FLTK) -I$(PDF) -I$(X11)/include
+CFLAGS = -Dunix -c $(OPT) -I$(X11BASE)/include -I$(LOCALBASE)/include
+CFLAGS+= -Dunix -c $(OPT) -I$(X11BASE)/include -I$(LOCALBASE)/include
OBJECTS = seaview.o pdf.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o chooser_plus.o resource.o nexus.o old_file_chooser.o

19
biology/seaview/files/patch-align.cxx
View File

@ -1,19 +0,0 @@
--- align.cxx.orig Mon Nov 17 14:15:01 2003
+++ align.cxx Mon Nov 17 14:15:26 2003
@@ -1,6 +1,7 @@
#include "seaview.h"
#include <stdlib.h>
#include <ctype.h>
+#include <unistd.h>
#ifndef WIN32
#include <FL/x.H>
#endif
@@ -155,7 +156,7 @@
#endif
debut = view->active_region->list->debut;
fin = view->active_region->list->fin;
-tmpnam(base_fname);
+mkstemp(base_fname);
/*
convertir en minuscules car clustalw n'accepte pas les majuscules ds filenames
*/

11
biology/seaview/files/patch-seaview.cxx
View File

@ -1,11 +0,0 @@
--- seaview.cxx.orig Mon Nov 17 14:16:39 2003
+++ seaview.cxx Mon Nov 17 14:17:13 2003
@@ -164,6 +164,8 @@
"seaview.hlp",
#elif defined(__APPLE__)
NULL,
+#elif defined(DEFAULT_HELPFILE)
+ __XSTRING(DEFAULT_HELPFILE),
#else
"seaview.help",
#endif