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artemis
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avida
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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babel
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bamtools
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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bcftools
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bedtools
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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biococoa
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Move Objective-C ports to the v2 GNUstep ABI.
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2019-02-03 15:37:58 +00:00 |
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bowtie
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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bowtie2
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bwa
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canu
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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cd-hit
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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cdbfasta
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checkm
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biology/checkm: Update 1.0.12 -> 1.0.13
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2019-02-09 22:58:09 +00:00 |
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chemeq
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clustal-omega
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clustalw
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clustalx
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Mark QT4 ports/functionality for removal on 2019-03-15
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2018-12-02 15:41:47 +00:00 |
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consed
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cytoscape
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ddocent
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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diamond
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biology/diamond: Update to version 0.9.24
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2018-12-31 19:00:00 +00:00 |
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dsr-pdb
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biology/dsr-pdb: Correct typo
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2019-02-05 19:01:59 +00:00 |
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emboss
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exonerate
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fasta
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fasta3
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fastahack
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fastdnaml
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fastool
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fastqc
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fasttree
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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fastx-toolkit
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figtree
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New port: biology/figtree: Graphical viewer of phylogenetic trees
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2019-02-03 21:14:38 +00:00 |
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fluctuate
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freebayes
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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garlic
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gatk
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devel/gradle: Update to 5.0
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2018-12-04 17:53:46 +00:00 |
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gff2ps
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biology/gff2ps: update 0.98d to 0.98l
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2018-12-19 17:34:29 +00:00 |
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gmap
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gperiodic
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graphlan
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New port: biology/graphlan: High-quality circular representations of taxonomic, phylogenetic trees
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2019-02-03 20:13:26 +00:00 |
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grappa
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groopm
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biology/groopm fails to build with python3
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2019-01-07 09:44:42 +00:00 |
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hisat2
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New port: biology/hisat2: Program for mapping next-generation sequencing reads
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2019-01-11 16:02:05 +00:00 |
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hmmer
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htslib
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hyphy
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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igv
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devel/gradle: Update to 5.0
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2018-12-04 17:53:46 +00:00 |
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infernal
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iolib
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iqtree
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biology/iqtree: switch to outsource cmake build
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2018-12-27 18:34:44 +00:00 |
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jalview
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jellyfish
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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kallisto
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Update science/hdf5 to 1.10.4
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2019-01-05 22:46:53 +00:00 |
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lagan
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lamarc
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libgtextutils
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libsbml
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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linux-foldingathome
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mafft
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mapm3
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migrate
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molden
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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mopac
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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mrbayes
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mummer
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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muscle
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ncbi-blast+
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Update dns/libidn2 to 2.1.1
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2019-02-09 23:25:36 +00:00 |
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ncbi-cxx-toolkit
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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ncbi-toolkit
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Update dns/libidn2 to 2.1.1
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2019-02-09 23:25:36 +00:00 |
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ngs-sdk
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p5-AcePerl
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Coordinate
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-FeatureIO
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p5-Bio-GFF3
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p5-Bio-Glite
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p5-Bio-Graphics
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p5-Bio-MAGETAB
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p5-Bio-NEXUS
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p5-Bio-Phylo
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p5-Bio-SCF
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p5-BioPerl
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p5-BioPerl-Run
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p5-transdecoder
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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p5-TrimGalore
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paml
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pbbam
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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pbcopper
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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pbseqan
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pear-merger
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phrap
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phred
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phylip
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phyml
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plinkseq
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primer3
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prodigal
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New port: biology/prodigal: Protein-coding gene prediction for prokaryotic genomes
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2019-02-03 18:08:14 +00:00 |
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prodigy-lig
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New port: biology/prodigy-lig: Prediction of protein-small molecule binding affinities
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2019-02-03 18:49:23 +00:00 |
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protomol
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psi88
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-biom-format
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-biopython
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- Update to 1.73
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2018-12-22 04:54:51 +00:00 |
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py-bx-python
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-cutadapt
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py-fastTSNE
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New port: biology/py-fastTSNE: Fast, parallel implementations of t-SNE
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2018-12-15 08:58:05 +00:00 |
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py-Genesis-PyAPI
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py-gffutils
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py-gtfparse
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-loompy
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biology/py-loompy: Update 2.0.16 -> 2.0.17
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2019-02-02 21:38:48 +00:00 |
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py-macs2
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-orange3-bioinformatics
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Fix Qt5 symbol version scripts to put the catch-all clause first. When
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2019-01-16 11:13:44 +00:00 |
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py-orange3-single-cell
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Fix Qt5 symbol version scripts to put the catch-all clause first. When
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2019-01-16 11:13:44 +00:00 |
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py-pyfaidx
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py-pysam
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biology/py-pysam: Update 0.15.1 -> 0.15.2
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2019-01-26 04:15:54 +00:00 |
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pycogent
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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pyfasta
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- Update WWW
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2019-02-07 09:30:40 +00:00 |
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python-nexus
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rainbow
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recombine
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ruby-bio
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rubygem-bio
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samtools
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seaview
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seqan
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seqan1
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seqan-apps
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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seqio
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seqtk
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seqtools
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biology/seqtools: fix build on current, if lld is lld7
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2019-01-07 19:54:40 +00:00 |
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sim4
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slclust
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smithwaterman
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stacks
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biology/stacks: Upgrade to 2.3
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2019-01-12 15:53:00 +00:00 |
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stringtie
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t_coffee
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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tabixpp
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treepuzzle
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trimadap
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trimmomatic
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tRNAscan-SE
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ugene
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Fix Qt5 symbol version scripts to put the catch-all clause first. When
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2019-01-16 11:13:44 +00:00 |
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unanimity
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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vcflib
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vcftools
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velvet
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wise
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Makefile
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New port: biology/figtree: Graphical viewer of phylogenetic trees
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2019-02-03 21:14:38 +00:00 |
dc7a01a3c8