Fernando Apesteguía 80f4d4eac4 science/afni: update to 20.3.04 ... Reported by: portscout		2020-12-27 13:06:51 +00:00
..
2d-rewriter
abinit
afni	science/afni: update to 20.3.04	2020-12-27 13:06:51 +00:00
agrum	science/agrum: Update 0.18.1 -> 0.18.2	2020-11-13 07:14:41 +00:00
aircraft-datcom
ALPSCore	- Upgrade math/eigen3 to 3.3.8;	2020-12-12 17:04:37 +00:00
antioch	- Upgrade math/eigen3 to 3.3.8;	2020-12-12 17:04:37 +00:00
apbs	science/apbs: fix build on current	2020-08-27 18:37:59 +00:00
atompaw
avogadro2
avogadrolibs	- Upgrade math/eigen3 to 3.3.8;	2020-12-12 17:04:37 +00:00
axom	New port: science/axom: Infrastructure for development of multi-physics applications and tools	2020-10-09 03:42:21 +00:00
bagel
bddsolve
berkeleygw	Mark BROKEN on i386 and GCC 10:	2020-11-17 21:37:49 +00:00
bodr
buddy
cdcl	science/cdcl: fix build on recent current	2020-08-28 16:09:15 +00:00
cdf
cdk
cdo	graphics/proj: Update to 7.2.0	2020-11-18 05:27:28 +00:00
cgnslib	science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with	2020-12-26 11:48:36 +00:00
cgribex
checkmol	- Bump PORTREVISION. fpc was updated to 3.2.0	2020-11-25 03:13:18 +00:00
chemical-mime-data	Prefer graphics/ligvrsvg2-rust over graphics/librsvg2	2020-11-09 17:08:12 +00:00
chemps2
chemtool	science/chemtool: Update dependency transfig:print/transfig -> fig2dev:print/fig2dev	2020-10-18 17:53:03 +00:00
chemtool-devel	science/chemtool-devel: replace transfig with fig2dev	2020-10-18 20:10:56 +00:00
chrono	- Upgrade math/eigen3 to 3.3.8;	2020-12-12 17:04:37 +00:00
clhep
clipper
code_saturne	Upgrade to 6.1.3 and enable Python bindings for PLE.	2020-12-23 18:37:11 +00:00
colt
conduit	science/conduit: Update 0.5.1 -> 0.6.0	2020-11-03 19:57:57 +00:00
coordgenlibs	science/coordgenlibs: Update 1.4.1 -> 1.4.2	2020-10-14 08:11:18 +00:00
cp2k
cp2k-data
crf++	Clean up some things	2020-09-24 08:50:25 +00:00
dalton	science/dalton: Update 2018.2 -> 2020.0	2020-11-16 02:14:25 +00:00
dcl
devisor
dftbplus	Add workaround for new failure with Fortran GCC 10 frontend:	2020-11-17 22:28:16 +00:00
dkh
dlib-cpp	science/dlib-cpp: Build shared library instead of static one.	2020-11-03 08:03:19 +00:00
dlpoly-classic	Mark as BROKEN with GCC 10:	2020-11-17 21:34:30 +00:00
drawxtl
dvc	scipy 1.5.4 is only compatible with python 3.6+	2020-12-24 09:03:39 +00:00
eccodes	Update to 2.19.1	2020-11-21 09:18:19 +00:00
elk	Add workaround for new failure with Fortran GCC 10 frontend:	2020-11-17 22:32:32 +00:00
elmerfem	- Upgrade cad/opencascade to 7.5.0	2020-11-14 17:25:20 +00:00
epte	science/epte: fix build on recent current	2020-08-28 20:59:08 +00:00
erd
ergo
erkale	math/armadillo: Update to 10.1.1	2020-10-29 22:30:44 +00:00
erkale-pseudopotentials
fastcap	science/fastcap: fix build on recent current	2020-08-28 22:00:33 +00:00
fasthenry	science/fasthenry: fix build on recent current	2020-08-28 22:02:42 +00:00
fastjet
fisicalab	Add education virtual category	2020-11-20 07:16:06 +00:00
fsom
fvcom
fvcom-mpi
gabedit	science/gabedit: Update 2.5.1-061218 -> 2.5.1-300720; Fix build on 13	2020-09-20 22:12:22 +00:00
gamess-us
gchemutils
gdma
getdp
ghemical
ghmm
gnudatalanguage	- Upgrade math/eigen3 to 3.3.8;	2020-12-12 17:04:37 +00:00
gpaw-setups
gramps	Prefer graphics/ligvrsvg2-rust over graphics/librsvg2	2020-11-09 17:08:12 +00:00
grib_api
gromacs	science/gromacs: Turn the option FLOAT to OFF by default	2020-12-18 05:40:05 +00:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf	Add workaround for Fortran frontend to GCC 10.	2020-11-17 22:21:03 +00:00
hdf5
hdf5-18
healpix
hepmc3	science/hepmc3: Update 3.2.2 -> 3.2.3	2020-12-17 04:23:50 +00:00
highfive	science/highfive: Update 2.2.1 -> 2.2.2	2020-08-03 03:29:56 +00:00
hypre	science/hypre: Update 2.19.0 -> 2.20.0	2020-09-25 19:01:00 +00:00
iboview
InsightToolkit	- Upgrade math/eigen3 to 3.3.8;	2020-12-12 17:04:37 +00:00
isaac-cfd
jdftx
jmol	science/jmol: Update 14.31.18 -> 14.31.20	2020-12-20 06:30:17 +00:00
jstrack
kalzium	Update KDE Applications to 20.12	2020-12-11 19:18:03 +00:00
kim-api	science/kim-api: Update 2.2.0 -> 2.2.1	2020-12-14 05:31:14 +00:00
kst2	Force to rebuild after math/matio update	2020-09-26 16:30:14 +00:00
lammps	science/lammps: Update 30Nov2020 -> 24Dec2020	2020-12-24 21:05:44 +00:00
lamprop
latte	Do not include bsd.port.mk twice	2020-12-08 09:30:36 +00:00
libaec	Use the release tag instead of commit hash	2020-10-10 07:44:37 +00:00
libccp4	Add education virtual category	2020-11-20 07:16:06 +00:00
libcint	science/libcint: Update 4.0.6 -> 4.0.7	2020-12-20 01:00:36 +00:00
libctl	science/libctl: Update to 4.5.0	2020-10-31 15:59:08 +00:00
libefp
libgeodecomp	Modify cad/scotch to support int64.	2020-12-09 19:29:19 +00:00
libghemical
libgridxc	science/libgridxc: Unbreak build by disabling the option that breaks	2020-10-13 05:55:28 +00:00
libint
libint2
libkml
liblinear	Update to 2.42	2020-11-08 17:11:37 +00:00
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
luscus	science/luscus: Fix build on 13	2020-09-21 16:24:03 +00:00
madness	Update devel/tbb to 2020.3 and bump dependent ports' revisions	2020-07-17 10:12:25 +00:00
maeparser	science/maeparser: Update 1.2.3 -> 1.2.4	2020-10-14 08:15:26 +00:00
massxpert
mbdyn	Add workaround for new failure with Fortran GCC 10 frontend:	2020-11-17 22:36:02 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix	Add workaround for new failure with Fortran GCC 10 frontend:	2020-11-17 22:37:32 +00:00
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps	- Bump PORTREVISION. fpc was updated to 3.2.0	2020-11-25 03:13:18 +00:00
molgif
molscript
molsketch
mpb	science/mpb: Update to 1.11.1	2020-10-31 16:00:18 +00:00
mpqc
msms
multiwfn
namd
nest	science/nest: Update 2.20.0 -> 2.20.1	2020-12-06 09:22:22 +00:00
netcdf
netcdf-cxx
netcdf-fortran	science/netcdf-fortran: Unbreak build with GCC 10	2020-07-26 17:58:54 +00:00
nifticlib
nwchem	science/nwchem: Update 7.0.1 -> 7.0.2	2020-10-15 06:41:02 +00:00
nwchem-data	science/nwchem-data: Update 7.0.1 -> 7.0.2	2020-10-14 08:19:21 +00:00
octopus	Add workaround for new failure with Fortran GCC 10 frontend:	2020-11-17 22:39:17 +00:00
openbabel	- Upgrade math/eigen3 to 3.3.8;	2020-12-12 17:04:37 +00:00
openkim
openkim-models
opensim-core
opensph	- Upgrade math/eigen3 to 3.3.8;	2020-12-12 17:04:37 +00:00
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR	Update to 1.38	2020-07-24 07:10:54 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2	- Upgrade math/eigen3 to 3.3.8;	2020-12-12 17:04:37 +00:00
paje
pcmsolver	science/pcmsolver: Update 1.2.3 -> 1.3.0	2020-12-03 10:49:31 +00:00
PETSc	Rescue PETSc by upgrading to 3.14.1, and thus switch to Python 3.x.	2020-12-16 16:19:30 +00:00
plumed	science/plumed: Update 2.6.1 -> 2.6.2	2020-10-28 01:33:14 +00:00
pnetcdf
pulseview
py-abipy
py-asdf	Move devel/py-semantic_version to devel/py-semantic-version	2020-12-05 13:47:27 +00:00
py-ase	science/py-ase: Update 3.20.0 -> 3.20.1	2020-09-05 06:05:19 +00:00
py-avogadrolibs	Mark BROKEN	2020-12-25 09:16:26 +00:00
py-cdo	Update to 1.5.4	2020-12-24 13:53:55 +00:00
py-chainer	science/py-chainer: Update 7.2.0 -> 7.7.0	2020-11-14 17:05:49 +00:00
py-chainer-chemistry	science/py-chainer-chemistry: Update 0.7.0 -> 0.7.1	2020-08-17 20:05:58 +00:00
py-chempy	science/py-chempy: Update 0.7.12 -> 0.8.1	2020-12-06 22:32:36 +00:00
py-coards
py-DendroPy
py-dlib	science/py-dlib: Fix plist.	2020-08-29 18:15:01 +00:00
py-eccodes	Add py-eccodes 1.0.0 (copied from py-eccodes-python)	2020-12-19 20:04:12 +00:00
py-eccodes-python	Mark DEPRECATED and set EXPIRATION_DATE to 2020-12-31	2020-12-19 20:10:40 +00:00
py-geolinks
py-geomet	Update to 0.2.1.post1	2020-11-15 18:05:52 +00:00
py-geometer
py-geometric	Unbreak bulk -a	2020-09-19 14:15:42 +00:00
py-gpaw	Relax hardcoded paths to fix build with Python 3.8.7	2020-12-24 13:46:01 +00:00
py-GPy	scipy 1.5.4 is only compatible with python 3.6+	2020-12-24 09:03:39 +00:00
py-GPyOpt	scipy 1.5.4 is only compatible with python 3.6+	2020-12-24 09:03:39 +00:00
py-gsd	science/py-gsd: Update 2.3.0 -> 2.4.0	2020-11-15 19:36:20 +00:00
py-h5json
py-h5py
py-jupyter_jsmol	Adding jupyter-jsmol, a JSmol viewer widget for Jupyter Notebooks and	2020-12-22 11:48:07 +00:00
py-kim-query	science/py-kim-query: Update 1.0.0 -> 1.1.0	2020-08-28 19:44:09 +00:00
py-kinematics	Update to 0.1.7	2020-11-15 18:05:57 +00:00
py-kliff	science/py-kliff: Update 0.1.6 -> 0.1.7	2020-12-23 00:56:10 +00:00
py-liac-arff	Update to 2.5.0	2020-09-05 10:10:15 +00:00
py-lifelines	Unbreak bulk -a	2020-09-19 14:15:42 +00:00
py-MDAnalysis
py-MDAnalysisTests
py-mdp	science/py-mdp: remove optional expired dependency on devel/py-pp	2020-08-15 11:19:52 +00:00
py-mmtf-python
py-molmod
py-moltemplate	science/py-moltemplate: Update 2.19.3 -> 2.19.4	2020-12-24 23:16:42 +00:00
py-netCDF4	Relax hardcoded paths to fix build with Python 3.8.7	2020-12-24 13:46:01 +00:00
py-netcdf-flattener	Add py-netcdf-flattener 1.2.0	2020-12-10 21:28:22 +00:00
py-obspy	Unbreak bulk -a	2020-09-19 14:15:42 +00:00
py-oddt
py-OpenFermion	Unbreak bulk -a	2020-09-19 14:15:42 +00:00
py-openpiv	science/py-openpiv: update to 0.22.3	2020-09-28 21:18:16 +00:00
py-paida
py-paramz	scipy 1.5.4 is only compatible with python 3.6+	2020-12-24 09:03:39 +00:00
py-phono3py	Unbreak bulk -a	2020-09-19 14:15:42 +00:00
py-phonopy	science/py-phonopy: Update 2.8.0 -> 2.8.1	2020-10-12 04:37:49 +00:00
py-pupynere
py-pyaixi	Update to 1.0.4.post1	2020-11-15 18:06:01 +00:00
py-pycsw	Update to 2.6.0	2020-12-19 20:10:44 +00:00
py-pydicom	- Update to 2.1.2	2020-12-12 00:54:58 +00:00
py-PyFR
py-pygeodesy	Update to 20.12.10	2020-12-19 22:14:11 +00:00
py-pygeometa
py-pygmo2	science/py-pygmo2: Update 2.15.0-121 -> 2.15.0-139	2020-09-19 19:55:21 +00:00
py-pymatgen
py-pymol	science/py-pymol: switch to PYTHON_EXT_SUFFIX	2020-12-24 13:37:40 +00:00
py-pyosf
py-pysal	scipy 1.5.4 is only compatible with python 3.6+	2020-12-24 09:03:39 +00:00
py-pyteomics	Update to 4.4.0	2020-11-21 09:20:52 +00:00
py-qcelemental	science/py-qcelemental: Update 0.16.0 -> 0.17.0	2020-10-04 19:57:16 +00:00
py-qcengine	science/py-qcengine: Update 0.16.0 -> 0.17.0	2020-10-04 19:57:59 +00:00
py-qspin	scipy 1.5.4 is only compatible with python 3.6+	2020-12-24 09:03:39 +00:00
py-quantities
py-rmf
py-rmsd	scipy 1.5.4 is only compatible with python 3.6+	2020-12-24 09:03:39 +00:00
py-ruffus
py-scikit-fuzzy	Unbreak bulk -a	2020-09-19 14:15:42 +00:00
py-scikit-learn
py-scikit-optimize	Update to 0.8.1	2020-09-06 15:37:09 +00:00
py-scikit-sparse	Relax hardcoded paths to fix build with Python 3.8.7	2020-12-24 13:46:01 +00:00
py-scimath	Unbreak bulk -a	2020-10-20 07:02:56 +00:00
py-scipy	science/py-scipy: Remove the recently added USES=blaslapack:openblas because LIB_DEPENDS=libblas.so:math/blas provides blas	2020-12-25 05:41:53 +00:00
py-scoria	scipy 1.5.4 is only compatible with python 3.6+	2020-12-24 09:03:39 +00:00
py-segyio	Relax hardcoded paths to fix build with Python 3.8.7	2020-12-24 13:46:01 +00:00
py-SimpleSpectral
py-spglib	Relax hardcoded paths to fix build with Python 3.8.7	2020-12-24 13:46:01 +00:00
py-tensorflow	devel/icu: update to 68.1	2020-11-03 00:56:26 +00:00
py-veusz	Update PyQt5 to 5.15.2, sip to 5.5.0, py-qtbuilder to 1.6.0 and py-qt5-sip to 12.8.1	2020-12-15 17:56:00 +00:00
pybrain	scipy 1.5.4 is only compatible with python 3.6+	2020-12-24 09:03:39 +00:00
pynn
qbox	science/qbox: Update 1.72.2 -> 1.72.3	2020-12-15 06:01:05 +00:00
qcl
qiskit-aer	devel/libfmt: Update to 7.0.3	2020-09-07 21:19:41 +00:00
qmcpack	science/qmcpack: Update 3.9.2 -> 3.10.0	2020-11-13 05:10:06 +00:00
quantum-espresso	science/quantum-espresso: Update 6.6 -> 6.7.0	2020-12-03 20:51:28 +00:00
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071	- Update to 1.7-4	2020-10-17 14:19:29 +00:00
R-cran-eco
R-cran-Epi	- Update to 2.42	2020-11-10 11:37:03 +00:00
R-cran-epicalc
R-cran-etm	- Update to 1.1.1	2020-09-09 08:59:47 +00:00
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit	science/rdkit: Update 2018.09.3 -> 2020.09.3	2020-12-13 22:00:58 +00:00
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo	Update to 2.2.0	2020-11-21 09:43:54 +00:00
rubygem-rgeo-geojson
rubygem-rgeo-proj4	graphics/proj: Update to 7.2.0	2020-11-18 05:27:28 +00:00
rubygem-rgeo-shapefile	Update to 3.0.0	2020-09-05 21:35:09 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis	Update Qt/PySide2 to 5.15.2 / PyQt to 5.15.1 / SIP to 5.4.0	2020-12-08 20:03:07 +00:00
segyio	science/segyio: Update 1.9.4 -> 1.9.5	2020-12-17 20:35:23 +00:00
siesta	Add workaround for new failure with Fortran GCC 10 frontend:	2020-11-17 22:40:45 +00:00
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo	science/silo: Backport of patches from Debian to support Python 3	2020-09-27 11:32:55 +00:00
simbody
simgrid	science/simgrid: add libunwind to dependencies on powerpc64	2020-09-12 19:19:49 +00:00
simint
simlib
simsmith
smoldyn	science/smoldyn: Update 2.62 -> 2.63	2020-12-20 06:45:09 +00:00
sparta
spglib	science/spglib: Update 1.15.1 -> 1.16.0	2020-08-03 07:26:08 +00:00
step	- Upgrade math/eigen3 to 3.3.8;	2020-12-12 17:04:37 +00:00
svmlight
szip
teem
tfel	Upgrade to 3.4.0	2020-12-13 14:48:11 +00:00
tfel-edf	Fix for GCC_DEFAULT=10.	2020-12-21 16:37:23 +00:00
tinker	science/tinker: Update 8.8.1 -> 8.8.3	2020-11-10 22:54:52 +00:00
udunits
v_sim	- Fix build without NLS (missing gettext-tools dependency) and without EXAMPLES (broken patching)	2020-08-04 16:00:43 +00:00
vipster	science/vipster: Update 1.18b.20200514 -> 1.19.1b-14	2020-12-22 11:06:15 +00:00
vmd
voro++
votca	science/votca: Update 1.6.2 -> 1.6.3	2020-12-18 05:40:58 +00:00
wannier90	science/wannier90: Fix registration of libwannier in ldconfig by adding the symlink; Add the 'test' target.	2020-12-27 02:31:00 +00:00
wwplot
wxmacmolplt
xcrysden	science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with	2020-12-26 11:48:36 +00:00
xdrawchem
xfce4-equake-plugin
xtb	science/xtb: update to 6.3.3	2020-09-20 21:19:02 +00:00
yoda	science/yoda: Update 1.8.4 -> 1.8.5	2020-12-06 20:30:15 +00:00
Makefile	Adding jupyter-jsmol, a JSmol viewer widget for Jupyter Notebooks and	2020-12-22 11:48:07 +00:00