freebsd-ports/math
Sunpoet Po-Chuan Hsieh 6272f4bbab Add py-hdbscan 0.8.24
HDBSCAN - Hierarchical Density-Based Spatial Clustering of Applications with
Noise. Performs DBSCAN over varying epsilon values and integrates the result to
find a clustering that gives the best stability over epsilon. This allows
HDBSCAN to find clusters of varying densities (unlike DBSCAN), and be more
robust to parameter selection.

In practice this means that HDBSCAN returns a good clustering straight away with
little or no parameter tuning -- and the primary parameter, minimum cluster
size, is intuitive and easy to select.

HDBSCAN is ideal for exploratory data analysis; it's a fast and robust algorithm
that you can trust to return meaningful clusters (if there are any).

WWW: https://github.com/scikit-learn-contrib/hdbscan
2019-12-29 12:46:11 +00:00
..
4ti2
aamath
abella New port: math/abella: Interactive theorem prover 2019-11-29 19:40:18 +00:00
abs Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
acalc
add
adept
adol-c devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
algae
alglib math/alglib: Update 3.15.0 -> 3.16.0 2019-12-25 01:57:47 +00:00
alt-ergo
amath
ambit math/ambit: Update 0.3 -> 0.4 2019-11-10 07:37:16 +00:00
analitza KDE's December 2019 Apps Update 2019-12-12 23:24:36 +00:00
ann
antic
apc Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
apron
arb
aribas
armadillo devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
arpack-ng
arpack++
ascent math/ascent: Update 0.4.0 -> 0.5.0 2019-12-08 16:42:19 +00:00
aspcud devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
asymptote
atlas
barvinok
bcal
biggles Deprecate a few ports 2019-12-26 07:54:28 +00:00
bitwise math/bitwise: Update 0.40 -> 0.41 2019-12-19 07:49:56 +00:00
blacs
blas
blasfeo
blaze devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
blazeiterative devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
blis Refactor hardcoded string "llvm60" into LLVM_VER for future ease 2019-12-04 18:20:44 +00:00
blitz++ math/blitz++: update to 1.0.2 2019-11-09 18:16:33 +00:00
blocksolve95
bonmin
boolector math/boolector: Update 3.0.0-239 -> 3.1.0 2019-12-04 07:18:01 +00:00
bsdnt
btor2tools
cadabra2 math/cadabra2: Update 2.2.7 -> 2.2.8 2019-12-25 01:53:15 +00:00
cadical Attempt to fix failure on GCC-based systems: 2019-12-05 00:57:34 +00:00
calc calc: Bump PORTREVISION for cscript path changes (to libexec) 2019-11-05 00:14:48 +00:00
calcoo math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
calctool Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
cantor KDE's December 2019 Apps Update 2019-12-12 23:24:36 +00:00
casadi
cbc math/cbc: Update 2.9.9 -> 2.10.3 2019-12-21 22:58:54 +00:00
cblas
ccmath
cddlib
ceres-solver Update devel/tbb to 2020.0 and bump dependent ports' revisions [1] 2019-12-26 16:25:22 +00:00
cgal devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
cgl math/cgl: Update 0.59.10 -> 0.60.2 2019-12-21 22:56:31 +00:00
chaco
chryzodus
clasp
clblas devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
clblast
clfft
clingo Fix build on GCC-based systems: 2019-11-16 16:04:26 +00:00
cln math/cln: fix build on powerpc64 elfv2, simplify port 2019-12-01 12:08:39 +00:00
cloog
clp math/clp: Update 1.16.10 -> 1.17.3 2019-12-21 22:55:31 +00:00
clrng
cminpack
cmlib
cocoalib devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
coin-or-data-netlib
coin-or-data-sample
coin-or-data-stochastic
coinmp
coinutils
combblas
concorde
convertall
coq math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
couenne
cppad
crlibm
cryptominisat devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
csdp math/csdp: Fix build where omp.h is missing in the base system 2019-12-26 16:32:33 +00:00
curv Update devel/tbb to 2020.0 and bump dependent ports' revisions [1] 2019-12-26 16:25:22 +00:00
cvc3
cvc4 devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
darknet math/darknet: Update g20180914 -> 3-446 2019-12-16 02:06:55 +00:00
dbcsr
deal.ii Update devel/tbb to 2020.0 and bump dependent ports' revisions [1] 2019-12-26 16:25:22 +00:00
diehard Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
dieharder
djbfft
drgeo math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
dsdp
dynare devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
e Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
ecos
edenmath
eigen2
eigen3
eispack Fix build with src r354909 applied. 2019-11-25 23:25:52 +00:00
elpa
emc2 Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
ensmallen math/ensmallen: Update 2.10.4 -> 2.10.5 2019-12-14 07:21:21 +00:00
ent
entropy Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
eprover
ess
eukleides
eval
exprtk
facile
fann
fcl
fflas-ffpack
fftw
fftw3
fftw3-float
fftw3-long
fftw3-quad
fftw-float
flann
flint2
flintqs
form
fpc-fftw
fpc-gmp
fpc-numlib
fplll math/fplll: Update 5.2.1-229 -> 5.3.0 2019-11-24 19:21:57 +00:00
fricas Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
frobby
fxt
g2o
galculator math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
gambit
gap
gau2grid
gemmlowp
geogebra
geogram math/geogram: Update 1.7.1 -> 1.7.2 2019-12-04 07:14:52 +00:00
geonext Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
gexpr
gfan
gfanlib
ggobi
gh-bc Upgrade to version 2.4.0 2019-12-03 10:22:02 +00:00
giacxcas
GiNaC
givaro
gkmap math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
glgraph
glm
glpk
glucose
gmm++
gmp
gmp-ecm
gnome-calculator
gnubc
gnumeric Update to 1.2.46 2019-12-27 09:15:43 +00:00
gnuplot Update to 5.2.8 2019-12-02 06:14:00 +00:00
gnuplot-lite
gnuplot-tex-extras Update to 5.2.8 2019-12-02 06:16:24 +00:00
gotoblas
grace
graphthing math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
gretl math/gretl: Update 2019a -> 2019d 2019-12-26 19:47:42 +00:00
gri
gringo
grpn
gsl
hexcalc Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
hipmcl
hmat-oss
hpipm
hs-Agda
hs-semigroups
ideep
ignition-math
igraph math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
intervaltree
ipopt
ised
jacal
jags
jakarta-commons-math3 Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
jama
jeuclid Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
jlatexmath Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
jsmath-fonts
jtransforms
jts
kalgebra KDE's December 2019 Apps Update 2019-12-12 23:24:36 +00:00
kbruch KDE's December 2019 Apps Update 2019-12-12 23:24:36 +00:00
kcalc KDE's December 2019 Apps Update 2019-12-12 23:24:36 +00:00
kig KDE's December 2019 Apps Update 2019-12-12 23:24:36 +00:00
kktdirect
kmplot KDE's December 2019 Apps Update 2019-12-12 23:24:36 +00:00
labplot
lambda
lapack
lapack95
lapack++
lapacke
laspack
latte-integrale
ldouble
lean
lemon
levmar Fix build with src r354909 applied. 2019-11-25 23:25:52 +00:00
libccd
libflame
liblbfgs Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
libmesh devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
libmissing Fix build with src r354909 applied. 2019-11-25 23:25:52 +00:00
libnormaliz devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
libocas
liborigin
libpgmath
libpoly
libqalculate math/libqalculate: Update to 3.6.0 2019-12-28 20:35:22 +00:00
libranlip
libRmath math/libRmath: Update to version 3.6.2 2019-12-16 03:10:00 +00:00
librsb
libtommath
libtsnnls Unmark these ports broken on aarch64. 2019-11-08 03:54:11 +00:00
libxls update to 1.5.2 2019-12-27 13:31:41 +00:00
libxlsxwriter update to 0.9.0 2019-12-27 09:00:38 +00:00
libxsmm
lidia
linpack Additional builds with with src r354909 applied. 2019-12-20 23:24:40 +00:00
lis
lll_spect
lp_solve
lrng Fix build with src r354909 applied. 2019-11-25 23:25:52 +00:00
lrslib devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
ltl Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
ltl2ba
lybniz
mandelbulber2 math/mandelbulber2: Update 2.19 -> 2.20 2019-12-07 05:59:19 +00:00
mate-calc update math/mate-calc to 1.22.2 2019-12-23 23:27:01 +00:00
math77 Unmark broken on aarch64. 2019-11-08 03:49:18 +00:00
mathgl Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
mathmod
mathomatic
matio
matlab-installer Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
maxima
mbasecalc
mcsim
metis
metis4
mfem
mingw32-libgmp
minisat
miracl
mkl-dnn math/mkl-dnn: Spell CXXFLAGS_i386 correctly 2019-12-25 07:07:38 +00:00
mlpack devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
moab
moo
mpc
mpexpr
mpfr
mpfrc++ New port: math/mpfrc++: High-performance C++ interface for MPFR library 2019-11-08 04:59:14 +00:00
mpir
mppp
mprime
mtrxmath
multichoose
mumps Upgrade Code_Aster to 14.4.0-1. 2019-12-23 20:10:09 +00:00
mumps4
muparser
nanoflann
naturalmath Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
nauty
ndiff
newmat
nfft
ngraph
nlopt
ntl
numdiff
ocaml-ocamlgraph
ocaml-zarith
ocamlgsl
octave Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
octave-forge - Add optional dependency math/octave-forge-matgeom. 2019-12-02 00:23:41 +00:00
octave-forge-actuarial
octave-forge-base
octave-forge-bim
octave-forge-bioinfo
octave-forge-bsltl
octave-forge-cgi
octave-forge-civil-engineering
octave-forge-control
octave-forge-data-smoothing
octave-forge-database
octave-forge-dataframe
octave-forge-dicom
octave-forge-divand
octave-forge-doctest
octave-forge-econometrics
octave-forge-fenv
octave-forge-financial
octave-forge-fits
octave-forge-fpl
octave-forge-fuzzy-logic-toolkit
octave-forge-ga
octave-forge-general
octave-forge-generate_html
octave-forge-geometry
octave-forge-gnuplot
octave-forge-gsl
octave-forge-ident
octave-forge-image
octave-forge-informationtheory
octave-forge-integration
octave-forge-interval
octave-forge-io
octave-forge-irsa
octave-forge-level-set
octave-forge-linear-algebra - Resurrect math/octave-forge-linear algebra. 2019-11-14 20:56:04 +00:00
octave-forge-lssa
octave-forge-ltfat
octave-forge-mapping
octave-forge-matgeom - Update to 1.2.2. 2019-12-06 01:12:44 +00:00
octave-forge-miscellaneous
octave-forge-missing-functions
octave-forge-msh
octave-forge-multicore
octave-forge-mvn
octave-forge-nan - Update to 3.4.5. 2019-12-12 22:41:29 +00:00
octave-forge-ncarray
octave-forge-netcdf
octave-forge-nlwing2
octave-forge-nnet
octave-forge-nurbs
octave-forge-oct2mat
octave-forge-octclip
octave-forge-octproj
octave-forge-odebvp
octave-forge-optics
octave-forge-optim
octave-forge-optiminterp
octave-forge-outliers
octave-forge-plot
octave-forge-quaternion
octave-forge-queueing
octave-forge-secs1d
octave-forge-secs2d
octave-forge-secs3d
octave-forge-signal
octave-forge-simp
octave-forge-sockets
octave-forge-sparsersb
octave-forge-specfun
octave-forge-special-matrix
octave-forge-splines
octave-forge-statistics
octave-forge-stk
octave-forge-struct
octave-forge-symband
octave-forge-symbolic
octave-forge-tcl-octave
octave-forge-tsa - Update to 4.6.2. 2019-11-09 03:23:49 +00:00
octave-forge-zenity
octave-forge-zeromq
octomap math/octomap: Update 1.9.0 -> 1.9.1 2019-11-24 18:56:27 +00:00
ogdf Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
oleo math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
openblas
openfst
openlibm
openmesh Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
opensolaris-libm
openturns Update devel/tbb to 2020.0 and bump dependent ports' revisions [1] 2019-12-26 16:25:22 +00:00
optpp
orpie
osi
osqp
p5-AI-DecisionTree
p5-AI-Genetic
p5-AI-NeuralNet-BackProp
p5-AI-Perceptron
p5-Algorithm-Combinatorics
p5-Algorithm-CurveFit
p5-Algorithm-KMeans
p5-Algorithm-Munkres
p5-bignum
p5-Bit-ShiftReg
p5-Bit-Vector
p5-Bit-Vector-Minimal
p5-CAD-Calc
p5-Chart-Math-Axis
p5-Data-Float
p5-Date-Handler
p5-Geo-Coordinates-UTM
p5-Geo-Distance
p5-Geo-Distance-XS
p5-GIS-Distance
p5-GIS-Distance-Fast
p5-GIS-Distance-Lite
p5-Graph
p5-Math-Algebra-Symbols
p5-Math-Base36
p5-Math-Base85
p5-Math-BaseCalc
p5-Math-BaseCnv
p5-Math-Bezier
p5-Math-Bezier-Convert
p5-Math-BigInt
p5-Math-BigInt-FastCalc
p5-Math-BigInt-GMP
p5-Math-BigInt-Lite
p5-Math-BigInt-Pari
p5-Math-BigRat
p5-Math-Calc-Units
p5-Math-CDF
p5-Math-Cephes
p5-Math-Combinatorics
p5-Math-Complex
p5-Math-ConvexHull
p5-Math-Currency
p5-Math-Derivative
p5-Math-Evol
p5-Math-Expr
p5-Math-FFT
p5-Math-FixedPrecision
p5-Math-Fleximal
p5-Math-Geometry
p5-Math-Geometry-Planar
p5-Math-Geometry-Planar-GPC
p5-Math-Geometry-Planar-GPC-PolygonXS
p5-Math-Geometry-Planar-Offset
p5-Math-Geometry-Voronoi
p5-Math-GMP
p5-Math-GMPf
p5-Math-GMPq
p5-Math-GMPz
p5-Math-Gradient
p5-Math-GSL
p5-Math-Int64
p5-Math-Int128
p5-Math-Interpolate
p5-Math-Intersection-StraightLine
p5-Math-Logic
p5-Math-Matrix
p5-Math-MatrixReal
p5-Math-MPC
p5-Math-MPFR
p5-Math-NumberCruncher
p5-Math-Pari
p5-Math-Polygon
p5-Math-Polygon-Tree
p5-Math-Polynomial-Solve
p5-Math-Prime-Util
p5-Math-Prime-Util-GMP
p5-Math-Prime-XS
p5-Math-ProvablePrime
p5-Math-Random
p5-Math-Random-ISAAC
p5-Math-Random-ISAAC-XS
p5-Math-Random-MT
p5-Math-Random-MT-Auto
p5-Math-Random-OO
p5-Math-Random-Secure
p5-Math-RandomOrg
p5-Math-Round
p5-Math-Round-Var
p5-Math-RPN
p5-Math-Sequence
p5-Math-Series
p5-Math-SigFigs
p5-Math-SimpleVariable
p5-Math-Spline
p5-Math-String
p5-Math-Symbolic
p5-Math-Symbolic-Custom-CCompiler
p5-Math-Symbolic-Custom-Contains
p5-Math-Symbolic-Custom-ErrorPropagation
p5-Math-Symbolic-Custom-LaTeXDumper
p5-Math-Symbolic-Custom-Pattern
p5-Math-Symbolic-Custom-Simplification
p5-Math-Symbolic-Custom-Transformation
p5-Math-SymbolicX-BigNum
p5-Math-SymbolicX-Complex
p5-Math-SymbolicX-Error
p5-Math-SymbolicX-Inline
p5-Math-SymbolicX-NoSimplification
p5-Math-SymbolicX-ParserExtensionFactory
p5-Math-SymbolicX-Statistics-Distributions
p5-Math-TrulyRandom
p5-Math-Units
p5-Math-Utils
p5-Math-Vec
p5-Math-VecStat
p5-Math-VectorReal
p5-NetCDF
p5-Number-Compare
p5-Number-Fraction
p5-Number-Misc
p5-Number-Uncertainty
p5-Number-WithError
p5-Number-WithError-LaTeX
p5-Parse-Range
p5-Roman
p5-Set-IntSpan
p5-Set-IntSpan-Fast
p5-Set-IntSpan-Fast-XS
p5-Set-Partition
p5-Set-Window
p5-Statistics-Basic
p5-Statistics-Benford
p5-Statistics-CaseResampling
p5-Statistics-ChiSquare
p5-Statistics-Contingency
p5-Statistics-Descriptive
p5-Statistics-Descriptive-Discrete
p5-Statistics-Distributions
p5-Statistics-Forecast
p5-Statistics-Frequency
p5-Statistics-LineFit
p5-Statistics-Lite
p5-Statistics-LTU
p5-Statistics-OLS
p5-Statistics-R
p5-Statistics-Regression
p5-Statistics-TTest
p5-Task-Math-Symbolic
p5-Text-AsciiTeX
pantheon-calculator
pari math/pari: fix build on powerpc64 elfv2 2019-12-04 15:46:24 +00:00
parmetis
parmgridgen
pdal devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
PDL math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
pear-Math_BigInteger math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
pear-Math_Combinatorics
pecl-bitset
pecl-stats2
petiga Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
php72-bcmath
php72-gmp
php73-bcmath
php73-gmp
php74-bcmath
php74-gmp
physcalc
picosat
piranha devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
plman Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
ploticus Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
ploticus-nox11
plplot
plplot-ada
polylib
primegen
primesieve math/primesieve: Update 7.4-26 -> 7.5 2019-12-28 07:08:38 +00:00
primme math/primme: Update 2.2 -> 3.0 2019-12-25 06:50:18 +00:00
prng
proofgeneral math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
pspp
py-algopy
py-altgraph
py-apgl
py-arviz Unbreak ports tree 2019-12-01 22:38:04 +00:00
py-autograd
py-basemap According to upstream, py-basemap is deprecated and only support python 2.7 2019-12-14 09:00:30 +00:00
py-basemap-data Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
py-bayesian-optimization Unbreak bulk -a 2019-12-17 13:33:40 +00:00
py-bitmath
py-bitvector
py-bottleneck Update to 1.3.1 2019-12-08 17:03:33 +00:00
py-cdecimal
py-chaospy
py-cma
py-colormath
py-cryptominisat
py-cvxopt
py-cvxpy
py-cyipopt
py-CyLP
py-deap
py-Diofant
py-ecos
py-fastcluster
py-fastdtw
py-ffc
py-fiat
py-fpconst
py-gato Deprecate a few ports 2019-12-26 07:54:28 +00:00
py-gau2grid
py-gimmik
py-gmpy
py-gmpy2
py-gnuplot Deprecate a few ports 2019-12-26 07:54:28 +00:00
py-grandalf
py-graphillion
py-GridDataFormats
py-gym Unbreak this port after r519944 2019-12-28 07:31:05 +00:00
py-hdbscan Add py-hdbscan 0.8.24 2019-12-29 12:46:11 +00:00
py-igakit Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
py-igraph math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
py-intspan
py-keras - Update to 2.3.1 2019-12-04 15:02:47 +00:00
py-keras-applications math/py-keras-applications: update to 1.0.8 2019-11-03 19:26:59 +00:00
py-keras-preprocessing math/py-keras-preprocessing: update to 1.1.0 2019-11-03 19:27:38 +00:00
py-kiwisolver
py-levmar
py-libpoly
py-luminol
py-mathdom Deprecate a few ports 2019-12-26 07:54:28 +00:00
py-matplotlib
py-matplotlib-scalebar Add py-matplotlib-scalebar 0.6.1 2019-11-13 23:47:15 +00:00
py-mpmath
py-munkres
py-munkres10
py-MutatorMath
py-networkx
py-networkx1
py-nevergrad
py-numeric
py-numexpr
py-numpy Bump PORTREVISION after r520219 2019-12-16 09:22:43 +00:00
py-nzmath
py-onnx
py-osqp
py-pandas
py-pandas-datareader
py-patsy
py-permutation
py-petsc4py
py-piranha devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
py-plastex Update to 2.1 2019-12-28 07:31:10 +00:00
py-primme math/py-primme: Update 2.2 -> 3.0 2019-12-25 06:51:05 +00:00
py-probstat Deprecate a few ports 2019-12-26 07:54:28 +00:00
py-PuLP
py-pyasp
py-pybloom
py-pyclipper
py-pycosat
py-pyFFTW
py-pygsl
py-pygslodeiv2
py-pyhull
py-pyipopt
py-pymc
py-pymc3 Unbreak ports tree 2019-12-01 22:41:31 +00:00
py-PyMetis
py-pyneqsys
py-pynleq2
py-pyodeint devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
py-pyodesys
py-Pyomo math/py-Pyomo: Update 5.6.7 -> 5.6.8 2019-12-14 07:20:45 +00:00
py-PySCIPOpt
py-pysparse
py-pystan
py-pysym
py-python-louvain
py-pyvtk
py-PyWavelets
py-quadprog
py-random2
py-rapi Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
py-roman
py-rpy Deprecate a few ports 2019-12-26 07:54:28 +00:00
py-rpy2 Update to 3.2.3 2019-12-28 07:31:15 +00:00
py-scientific
py-scikit-umfpack
py-scs
py-seaborn
py-secp256k1
py-simhash
py-slepc4py
py-spectral
py-spot math/py-spot: Update 2.8.3 -> 2.8.4 2019-12-10 16:43:14 +00:00
py-statsmodels Update to 0.10.2 2019-12-08 17:03:38 +00:00
py-svgmath
py-sym
py-symcxx
py-sympy
py-theano
py-ufl
py-uncertainties
py-vincenty
py-viper Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
py-yt
py-z3-solver
qalculate math/qalculate: Update to 3.6.0 2019-12-28 20:36:12 +00:00
qd
qhull
qhull5
qposases
qrupdate
qtiplot-doc
qwtplot3d
R Add and use a shared INFO description. I have patches to add that knob to 2019-12-27 19:24:56 +00:00
R-cran-acepack [New Port] math/R-cran-acepack: ACE and AVAS for selecting multiple regression transformations 2019-12-06 09:47:57 +00:00
R-cran-Amelia - Update to 1.7.6 2019-12-03 01:06:06 +00:00
R-cran-assertthat
R-cran-backports
R-cran-bdsmatrix
R-cran-BsMD
R-cran-car
R-cran-carData
R-cran-ChangeAnomalyDetection
R-cran-coda
R-cran-combinat
R-cran-conf.design
R-cran-CVST
R-cran-ddalpha
R-cran-deldir
R-cran-DEoptimR
R-cran-dimRed
R-cran-dlmodeler
R-cran-DoE.base
R-cran-dplyr
R-cran-DRR
R-cran-expm
R-cran-forcats
R-cran-forecast
R-cran-Formula
R-cran-fracdiff - Update to 1.5-0 2019-12-11 17:37:00 +00:00
R-cran-FrF2
R-cran-geepack
R-cran-geometry
R-cran-gmp
R-cran-gower
R-cran-gpclib
R-cran-gss
R-cran-gtable
R-cran-haven
R-cran-igraph - Update to 1.2.4.2 2019-11-28 15:03:53 +00:00
R-cran-influenceR
R-cran-inline
R-cran-ipred
R-cran-irlba
R-cran-KFAS
R-cran-labeling
R-cran-lava
R-cran-lazyeval
R-cran-LearnBayes
R-cran-lme4
R-cran-magic
R-cran-Matching
R-cran-MatchIt
R-cran-MatrixModels
R-cran-maxLik
R-cran-mcmc
R-cran-MCMCpack - Update to 1.4-5 2019-12-03 15:18:36 +00:00
R-cran-memisc - Update to 0.99.21 2019-12-21 07:49:04 +00:00
R-cran-minqa
R-cran-miscTools - Update to 0.6.26 2019-12-28 13:05:05 +00:00
R-cran-mitools
R-cran-MSwM
R-cran-mvtnorm
R-cran-nloptr
R-cran-NMF
R-cran-nnls
R-cran-nortest
R-cran-numbers - Update to 0.7.5 2019-12-03 01:41:25 +00:00
R-cran-numDeriv
R-cran-outliers
R-cran-partitions - Update to 1.9.22 2019-12-03 02:29:46 +00:00
R-cran-pbkrtest
R-cran-pls
R-cran-polynom
R-cran-prodlim
R-cran-psych
R-cran-quadprog
R-cran-qualityTools
R-cran-quantreg - Update to 5.54 2019-12-16 17:19:59 +00:00
R-cran-RcppArmadillo - Update to 0.9.800.3.0 2019-12-07 12:35:09 +00:00
R-cran-RcppEigen - Update to 0.3.3.7.0 2019-11-17 23:37:13 +00:00
R-cran-RcppRoll
R-cran-recipes - Update to 0.1.8 2019-12-21 07:36:09 +00:00
R-cran-rgenoud
R-cran-RHmm
R-cran-Rmpfr
R-cran-robustbase
R-cran-Rsolnp
R-cran-RSvgDevice
R-cran-sandwich
R-cran-scatterplot3d
R-cran-sets Data structures and basic operations for ordinary sets, generalizations such as 2019-12-03 02:26:29 +00:00
R-cran-sf
R-cran-sm
R-cran-sp - Update to 1.3.2 2019-12-03 02:34:52 +00:00
R-cran-SparseM - Update to 1.78 2019-12-14 05:26:56 +00:00
R-cran-spData
R-cran-spdep
R-cran-SQUAREM
R-cran-sspir
R-cran-stabledist
R-cran-survey
R-cran-truncnorm
R-cran-units
R-cran-uroot
R-cran-VGAM - Update to 1.1.2 2019-12-03 00:56:50 +00:00
R-cran-xts
R-cran-Zelig
R-cran-zoo
randlib Fix build with src r354909 applied. 2019-11-25 23:25:52 +00:00
rapid
reduce Restore patch removed by mistake in r517026. 2019-11-08 03:44:59 +00:00
reduce-psl
reed-solomon
rehearse Fix build on GCC-based systems: 2019-12-22 17:59:20 +00:00
rexx-regmath
rkward-kde Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
rngstreams
rocs devel/grantlee: update to 5.2.0 2019-12-20 19:10:44 +00:00
rpcalc
rubygem-algebra
rubygem-expression_parser
rubygem-fftw3
rubygem-mathn
rubygem-mtrc
rubygem-narray
rubygem-narray_miss
rubygem-numru-misc
rubygem-numru-units
rubygem-rb-gsl
rumur math/rumur: Update 2019.11.24 -> 2019.12.22 2019-12-24 07:50:05 +00:00
saga Update jasper to 2.0.16 2019-12-27 13:43:00 +00:00
sage Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
sc Returns johans's ports to the pool after safekeeping his commit bit. 2019-11-04 21:21:03 +00:00
sc-im math/sc-im: fix build on GCC architectures 2019-12-07 15:49:01 +00:00
scalapack
scilab math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
scilab-toolbox-swt
SCIP
scs
sdpa
secp256k1
sfft Fix build with src r354909 applied. 2019-11-25 23:25:52 +00:00
sfst Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
simd-viterbi
singular
sisl Ask for modern compiler. Ancient GCC complains with: 2019-12-09 01:33:20 +00:00
slatec Fix build with src r354909 applied. 2019-11-25 23:25:52 +00:00
sleef math/sleef: fix build on powerpc64 elfv2 2019-12-02 18:00:07 +00:00
slepc Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
slgrace
snns Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
solitaire
SoPlex
sound-of-sorting math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
spar
spblas Fix build with src r354909 applied. 2019-11-25 23:25:52 +00:00
spectra
speedcrunch Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
spooles
spooles-mpich
spot math/spot: Update 2.8.3 -> 2.8.4 2019-12-10 19:37:59 +00:00
stp devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
suitesparse Update devel/tbb to 2020.0 and bump dependent ports' revisions [1] 2019-12-26 16:25:22 +00:00
sundials
superlu
symmetrica
symphony
tablix math: Add missing USES={gl,gnome,php,sdl,xorg} 2019-11-08 14:11:45 +00:00
taucs
tblis
tetgen
teyjus math/teyjus: Spell SHEBANG_GLOB correctly 2019-12-05 15:38:54 +00:00
timbl
tmv
tomsfastmath
topaz Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
topcom
triangle Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
trlan
truthtable Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
tvmet
ump Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
units
unuran
vampire
viennacl
visualpolylib
vowpal_wabbit devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
vtk6 - Fix build on powerpc64 elfv2. 2019-12-03 01:29:50 +00:00
vtk8 math/vtk*: Canonicalize option names 2019-11-24 15:27:19 +00:00
wavelib New port: math/wavelib: Wavelet Transform (DWT, SWT and MODWT) 2019-12-13 01:57:26 +00:00
wcalc
wfmath
why3
wingz3 Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
wxmaxima math/wxmaxima: Update to 19.12.2 2019-12-23 18:20:23 +00:00
x12arima Mark a few ports BROKEN (unfetchable) 2019-11-06 14:00:19 +00:00
xblas
xfce4-calculator-plugin
xgraph Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
xlapack
xldlas
xlife++ Unmark these ports broken on aarch64. 2019-11-08 03:54:11 +00:00
xplot Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
xppaut Add USES=xorg USES=gl, ports categories m 2019-11-06 18:07:22 +00:00
xspread Add USES={gl,gnome,mate,sdl,xorg} missed in the last round 2019-11-14 12:39:42 +00:00
xtensor math/xtensor: Update 0.21.1 -> 0.21.2 2019-12-25 00:44:18 +00:00
yacas math/yacas: update to 1.8.0 2019-11-04 12:55:22 +00:00
yices
z3 math/z3: Pull in upstream patch to fix build on i386. 2019-11-24 07:17:49 +00:00
zegrapher devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
zimpl
Makefile Add py-hdbscan 0.8.24 2019-12-29 12:46:11 +00:00