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freebsd-ports/biology
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Martin Wilke c3b46463f4 - Update to 1.5-beta2 
- Pass maintainership to submitter

PR:             110621
Submitted by:   Nemo Liu<nemoliu@gmail.com>
2007-03-27 08:01:54 +00:00
..
adun - mark ignore on FreeBSD 5.x 2007-02-19 03:39:29 +00:00
ariadne Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
artemis
avida Mark as broken for i386 4.x 2006-08-10 23:02:49 +00:00
babel
belvu - Release distfile was renamed. 2007-03-08 13:17:26 +00:00
biococoa - add category gnustep 2007-01-31 18:18:14 +00:00
biojava - Update to 1.5-beta2 2007-03-27 08:01:54 +00:00
blast - Update PORTREVISION to match latest release (see main web site) 2006-06-11 09:13:43 +00:00
blat Add blat 33, a fast tool for local sequence similarity searches. 2006-03-15 10:26:12 +00:00
boinc-simap - Add hmmer 5.09 application 2006-10-10 11:31:42 +00:00
chemeq
clustalw Reset dbader@eece.unm.edu due to maintainer-timeout. While here, fix fetch. 2007-03-11 03:20:27 +00:00
crimap Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
distribfold USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more than 2006-06-11 15:29:01 +00:00
dna-qc Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
dotter Unmark BROKEN, it seems to be caused by a stale distfile on ftp-master. 2006-08-03 20:28:00 +00:00
embassy For EMBOSS: 2006-03-31 09:43:21 +00:00
emboss For EMBOSS: 2006-03-31 09:43:21 +00:00
fasta Update to 21.u1.d1 (fixes fetch). 2006-05-07 13:04:20 +00:00
fasta3 - Update to 34.26.2 2007-03-09 11:26:13 +00:00
fastdnaml
finchtv
fluctuate Fix master site and un-deprecate 2007-01-25 11:01:25 +00:00
garlic Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
genpak
gff2ps Reset chuynh@biolateral.com.au: address bounces. 2007-03-10 20:20:10 +00:00
gmap Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA 2006-09-29 04:05:55 +00:00
gperiodic Chase the GNOME X11BASE to LOCALBASE move, and fix the build with the 2006-10-14 08:54:54 +00:00
grappa Reset dbader@ece.unm.edu due to timeouts and no response to email. 2006-12-13 13:20:20 +00:00
hmmer
jalview Jalview is a multiple alignment editor written in Java. It is used widely in a 2006-02-13 09:42:13 +00:00
kinemage - Respect X11BASE 2006-11-27 22:03:22 +00:00
L-Breeder - Use features of bsd.wx.mk, especially USE_WX 2006-12-01 07:39:02 +00:00
lagan Add lagan 1.2, efficient tools for large-scale multiple alignments of 2006-03-16 22:31:26 +00:00
lamarc Get rid of biology/coalesce dependency, it is deprecated and will be removed 2007-01-25 11:10:43 +00:00
libgenome Use libtool port instead of included version to avoid objformat a.out botch 2007-02-01 02:42:05 +00:00
linux-foldingathome Folding@Home is a distributed computing project -- people from through out the 2006-08-28 22:33:45 +00:00
lsysexp - Add MASTER_SITE 2006-06-06 10:07:55 +00:00
mafft - Update to 5.743 2006-03-19 12:59:16 +00:00
migrate - Update to 2.1.3 2006-12-10 12:39:32 +00:00
molden - Fix typo 2007-01-23 13:05:24 +00:00
mopac - Fix pkg-plist [1] 2006-07-10 05:32:58 +00:00
nab - Update to 5.1.2 2006-12-23 21:45:17 +00:00
ncbi-toolkit - Respect X11BASE 2006-12-09 07:49:55 +00:00
ortep3 Fix build. 2007-01-19 06:41:03 +00:00
p5-AcePerl - Mark broken on amd64 < 6. We got following 2006-12-04 04:13:30 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response to 2007-03-14 08:18:21 +00:00
p5-Bio-Phylo Update to v0.15 2006-12-27 18:58:26 +00:00
p5-bioperl
p5-bioperl-devel
p5-bioperl-run Bioperl-run contain modules that provides a PERL interface to various 2006-05-02 21:30:08 +00:00
p5-bioperl-run-devel Bioperl-run contain modules that provides a PERL interface to various 2006-05-02 21:31:43 +00:00
paml Reset dbader@eece.unm.edu due to maintainer-timeouts. 2007-03-11 03:21:18 +00:00
phylip Update to 3.66 2007-01-27 21:23:52 +00:00
platon * Migrate to gfortran. 2007-01-17 05:30:10 +00:00
povchem Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
primer3 - Update to 1.0.1 2006-12-29 23:40:53 +00:00
protomol Add protomol 2.0.3, OO, component based, framework for molecular 2006-05-05 20:09:54 +00:00
psi88 Build fix. 2007-01-29 02:13:52 +00:00
py-biopython - Update to 1.42 2006-10-31 13:25:21 +00:00
pymol Update to 0.99rc6. 2007-02-09 00:11:54 +00:00
rasmol
recombine Fix master sites, un-deprecate and update biology/recombine to 1.41. 2007-01-25 12:22:50 +00:00
ruby-bio - Update to 1.0.0 2006-04-25 22:09:29 +00:00
seaview Chase pdf library and bump PORTREVISION. 2006-10-09 08:18:35 +00:00
seqio Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
sim4 Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
t_coffee - Update to 4.96 2007-03-09 11:26:16 +00:00
tinker - MASTER_SITE is back, remove BROKEN 2007-03-16 21:16:36 +00:00
treepuzzle
treeviewx - Allow wxWidgets 2.6 alongside 2.4, this port works with both 2006-10-09 07:16:37 +00:00
tRNAscan-SE Reset chuynh@biolateral.com.au: address bounces. 2007-03-10 20:20:10 +00:00
wise Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response 2006-12-26 12:46:34 +00:00
xdrawchem Mark as BROKEN on sparc64 due to internal compiler error. 2006-07-03 22:22:09 +00:00
xmolwt Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
Makefile Remove expired leaf port: 2007-01-25 11:25:40 +00:00