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freebsd-ports/science
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Sunpoet Po-Chuan Hsieh 1fe44bd370 Update to 1.3.5 
Changes:	https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog
		https://github.com/Try2Code/cdo-bindings/commits/master
2017-10-03 15:35:02 +00:00
..
2d-rewriter
afni After r446199 libR.so has SONAME and was made visible for 2017-07-24 18:26:39 +00:00
avogadro devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
bddsolve devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
bft
bodr - Add LICENSE 2017-05-02 09:00:11 +00:00
brian math/py-numpy: track PORTEPOCH in consumers 2016-10-28 17:13:24 +00:00
buddy
cdcl Mark some ports failing on armv6, for errors classified as "linker_error". 2017-05-27 22:16:50 +00:00
cdf Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
cdo Remove USES=execinfo. 2017-09-22 10:48:28 +00:00
cgnslib Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
cgribex Add GRIB_API option 2017-02-12 08:20:20 +00:00
checkmol - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:48:32 +00:00
chemical-mime-data Use USES=pathfix where applicable. 2016-10-21 15:21:13 +00:00
chemtool Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
chemtool-devel Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
clhep Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
colt The output of tools like awk, date, sort, tr,... depends on the current 2017-01-18 13:20:31 +00:00
crf++
dcl Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
devisor
dlpoly-classic Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
ecs Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
epte
fastcap Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fasthenry Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fisicalab Update GNUstep core libraries. 2017-08-21 13:26:28 +00:00
fvcom Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
fvcom-mpi
fvm Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
gchemutils Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
getdp Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
ghemical Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
ghmm
gnudatalanguage science/gnudatalanguage: unbreak with gcc6 on 10.* 2017-09-26 22:32:04 +00:00
gramps science/gramps: Update to 4.2.6 2017-08-14 11:57:05 +00:00
grib_api Update to 1.23.1 2017-08-27 00:36:18 +00:00
gromacs devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
gsmc Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
gtamsanalyzer Update GNUstep core libraries. 2017-08-21 13:26:28 +00:00
gwyddion Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
h5utils - Update to 1.13 2017-07-26 13:42:00 +00:00
harminv Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
hdf Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
hdf5 Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
hdf5-18 Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 8.0.2 2017-08-08 17:21:45 +00:00
hypre Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
iboview devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
InsightToolkit science/InsightToolkit: Update to 4.12.2 2017-09-23 12:12:08 +00:00
isaac-cfd Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
jstrack Remove libtiff.so.4 compatibility links that were added in r374303 to 2016-12-08 16:07:33 +00:00
kalzium Chase ffmpeg 3.3 update (ABI changes) 2017-04-25 08:20:30 +00:00
kst2 Update math/gsl to 2.4 2017-07-03 20:38:11 +00:00
lamprop
libaec Update to 1.0.1 2017-07-22 18:40:37 +00:00
libctl Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
libgeodecomp devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
libghemical Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
libint Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
libkml devel/google{test,mock}: update to 1.8.0.358 2017-09-25 00:51:02 +00:00
liblinear * Updated to 2.11 2017-06-25 16:21:46 +00:00
liboglappth Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
libquantum
libsvm * Updated to 3.22 2017-06-19 17:27:24 +00:00
libsvm-python
libxc Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
linsmith
massxpert Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
mbdyn Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
mcstas Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
mcstas-comps Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
medit Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
meep Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
mei
metaf2xml * Fix broken symlinks 2017-06-29 19:22:05 +00:00
minc2 Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
mol2ps - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:50:29 +00:00
mpb Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
mpqc Remove USES=execinfo. 2017-09-22 10:48:28 +00:00
mpqc-mpich
ncs Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
netcdf Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
netcdf-cxx Add LICENSE 2017-08-25 18:21:02 +00:00
netcdf-fortran Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
nifticlib Pass -fPIC when building the port's static libraries. 2016-12-28 14:54:37 +00:00
openbabel science/openbabel: Update to 2.4.1 2017-05-24 01:43:00 +00:00
openkim Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
orthanc devel/google{test,mock}: update to 1.8.0.358 2017-09-25 00:51:02 +00:00
orthanc-dicomweb devel/google{test,mock}: update to 1.8.0.358 2017-09-25 00:51:02 +00:00
orthanc-postgresql devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
orthanc-webviewer devel/google{test,mock}: update to 1.8.0.358 2017-09-25 00:51:02 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR - Update to 1.36 2016-12-03 07:59:16 +00:00
p5-Geo-Coordinates-Converter Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Geo-Coordinates-Converter-iArea Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Mcstas-Tools Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
p5-PerlMol
p5-Physics-Unit Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
paje Update GNUstep core libraries. 2017-08-21 13:26:28 +00:00
paraview Remove USES=execinfo. 2017-09-22 10:48:28 +00:00
pnetcdf Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
psychopy Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
pulseview devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
py-cdo Update to 1.3.5 2017-10-03 15:35:02 +00:00
py-coards
py-DendroPy Update to 4.2.0 2017-03-29 21:16:07 +00:00
py-h5py Update to 2.7.0 2017-06-03 18:03:40 +00:00
py-hcluster
py-mdp
py-mlpy Update math/gsl to 2.4 2017-07-03 20:38:11 +00:00
py-netCDF4 science/py-netCDF4: Update version 1.2.7=>1.2.9 2017-09-20 13:19:59 +00:00
py-obspy Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
py-paida
py-pupynere
py-pyaixi
py-pydicom Never set WRKSRC when using USE_GITHUB. 2017-01-03 18:12:13 +00:00
py-pysal Update to 1.14.2 2017-09-24 19:08:07 +00:00
py-pyteomics Update to 3.4.2 2017-07-02 16:10:25 +00:00
py-pyteomics.biolccc Reassign makc's ports back to the pool. 2016-10-20 15:58:12 +00:00
py-scikit-fuzzy Update to 0.3 2017-06-09 18:44:37 +00:00
py-scikit-learn Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
py-scikit-sparse Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
py-scimath
py-scipy Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
py-tensorflow Ad TensorFlow 1.2.1 2017-08-15 12:08:02 +00:00
py-ws2300 - Update to 1.10 2016-12-29 01:39:00 +00:00
pybrain
pycdf In several dozen ports, use single space for WWW: line in pkg-descr, and 2016-11-22 14:04:21 +00:00
pynn - Update to 0.9.1 2017-05-23 02:34:02 +00:00
qcl Update devel/readline to 7.0 patch 3 2017-06-27 13:46:53 +00:00
qtresistors
R-cran-AMORE qa: add check for NO_ARCH 2017-06-18 18:09:16 +00:00
R-cran-bayesm - Update to 3.1.0.1 2017-08-08 12:07:25 +00:00
R-cran-cmprsk qa: add check for NO_ARCH 2017-06-18 18:09:16 +00:00
R-cran-DCluster qa: add check for NO_ARCH 2017-06-18 18:09:16 +00:00
R-cran-e1071 - Update to 1.6-8 2017-05-07 07:46:15 +00:00
R-cran-eco qa: add check for NO_ARCH 2017-06-18 18:09:16 +00:00
R-cran-Epi - Update to 2.19 2017-08-28 11:50:57 +00:00
R-cran-epicalc
R-cran-etm qa: add check for NO_ARCH 2017-06-18 18:09:16 +00:00
R-cran-kernlab - Add new port: science/R-cran-kernlab 2017-09-10 07:06:04 +00:00
R-cran-snow - Update to 0.4-2 2016-10-16 04:21:12 +00:00
R-cran-som
R-cran-udunits2 - Add new port: science/R-cran-udunits2 2017-06-27 03:36:03 +00:00
rubygem-ai4r Update LICENSE 2017-09-24 18:49:56 +00:00
rubygem-cdo Update to 1.3.4 2017-09-08 21:52:00 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf science/rubygem-ruby-netcdf: update to 0.7.2 2017-01-02 14:59:14 +00:00
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw science/sigrok-firmware-fx2lafw: Update to version 0.1.4. 2016-11-03 18:30:42 +00:00
sigrok-firmware-utils
silo Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
simlib Sort NOT_FOR_ARCHS. While here, clean up some BROKEN usages. 2017-06-24 18:36:19 +00:00
simsmith
step Update math/libqalculate to 1.0.0a 2017-08-03 07:13:39 +00:00
svmlight - With license framework, there's no longer need to shove license to docs, pkgmessage and restricted 2017-01-30 09:01:22 +00:00
szip Fix CONFLICTS_INSTALL 2017-05-27 19:42:13 +00:00
tfel Cleanup. 2017-05-04 20:30:48 +00:00
udunits Update to 2.2.25 2017-05-20 21:50:06 +00:00
v_sim Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
veusz Switch ports to use USE_PYQT=<foo> instead of using RUN_- and BUILD_DEPENDS 2017-02-04 13:37:15 +00:00
vmd science/vmd: various fixes 2017-06-18 06:03:29 +00:00
voro++
xfce4-equake-plugin - Update to 1.3.8.1 2017-03-05 08:09:35 +00:00
xmakemol Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
Makefile - Add new port: science/R-cran-kernlab 2017-09-10 07:06:04 +00:00