freebsd-ports/science
2022-09-05 22:06:44 +03:00
..
2d-rewriter
abinit
afni science/afni: update to 22.2.10 2022-09-04 19:59:40 +02:00
agrum
aircraft-datcom
ALPSCore */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
antioch
apbs
ascent science/ascent: Fix MPI, add MPI options NOMPI, MPICH, OPENMPI 2022-08-23 11:33:53 -07:00
atompaw
avogadro2
avogadrolibs
axom science/axom: Update 0.6.1-1671 -> 0.7.0 2022-09-03 23:12:09 -07:00
bagel */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
bddsolve */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
berkeleygw
bodr
buddy
cantera */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
cardioid science/cardioid: New port: Cardiac simulation toolkit 2022-08-24 13:32:26 -07:00
cdcl
cdf
cdk
cdo science/cdo: Update to 2.0.6 2022-08-31 19:40:52 +08:00
cgnslib
cgribex
checkmol
chemical-mime-data
chemicalfun
chemps2
chemtool
chemtool-devel science/chemtool-devel: Fix build on FreeBSD 13.1R and 14 2022-08-04 14:37:25 +01:00
chimes-calculator
ChipmunkPhysics
chrono */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
clhep
clipper
code_saturne
colt
conduit science/conduit: Update 0.8.3 -> 0.8.4 2022-08-28 15:27:46 -07:00
coordgenlibs */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
cp2k
cp2k-data
crf++
csvtk
dakota */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
dalton
dcl
devisor
dftbplus
dftd4
dimod science/dimod: Fix tests 2022-08-27 10:53:10 -07:00
dirac science/dirac: Broken on i386 2022-08-14 22:44:16 -07:00
dkh
dlib-cpp science/dlib-cpp: Update to 19.24 2022-08-10 19:06:40 +03:00
drawxtl
dvc
dwave-preprocessing science/dwave-preprocessing: New port: DWave: Preprocessing tools to aid in solving binary quadratic models 2022-08-27 19:35:08 -07:00
dynare */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
eccodes science/eccodes: Update to 2.27.0 2022-09-01 02:49:30 +08:00
elk
elmerfem
epte
erd
ergo
erkale */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
erkale-pseudopotentials
fastcap
fasthenry
fastjet */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
fisicalab
fleur
frontistr
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gbtolib
gchemutils */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
gdma
getdp
ghemical
ghmm
gnudatalanguage
gpaw-setups
gramps
grib_api
gromacs */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp science/h5z-zfp: Update 1.0.1 -> 1.1.0 2022-08-20 09:37:39 -07:00
harminv
hdf
hdf5
hdf5-18
hdf5-110
healpix
helfem */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
hepmc3
highfive
hypre science/hypre: Add comment 2022-08-21 23:01:47 -07:00
iboview */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
InsightToolkit
isaac-cfd
jdftx
jmol science/jmol: Unbreak by switching to Java 17 2022-08-25 11:12:33 -07:00
jstrack
kalzium science/kalzium: pet stage-qa 2022-09-05 22:06:44 +03:00
kim-api
kplib
kst2
lammps science/lammps: Update 23Jun2022 -> 23Jun2022_update1 2022-08-06 22:46:36 -07:00
lamprop
latte math/dbcsr: Update 2.3.0 -> 2.4.1 2022-09-02 08:31:20 -07:00
libaec
libccp4
libcint science/libcint: Update 5.1.3 -> 5.1.6 2022-08-28 13:56:18 -07:00
libctl
libecpint
libefp
libgeodecomp */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
libgetar
libghemical */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
libgridxc
libint
libint2 */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
libkml science/libkml: Revert 71a4cedd03 2022-09-04 23:24:42 +08:00
liblinear science/liblinear: Update to 2.45 2022-08-31 19:40:53 +08:00
libmbd
libmsym
libnegf
liboglappth
libquantum
libssm
libsvm science/libsvm: Update to 3.24 2022-08-20 18:31:42 -07:00
libsvm-python
libtensorflow1
libvdwxc
libxc science/libxc: Change to cmake; Install cmake files 2022-08-13 15:30:23 -07:00
liggghts
linux-zotero
luscus
madness
maeparser */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
massxpert
mbdyn
mcstas
mcstas-comps
mctc-lib
mcxtrace
mcxtrace-comps
mdynamix
medit
meep
metaphysicl */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
minc2
mmdb2
mmtf-cpp
mol2ps
molgif
molscript
molsketch */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
mopac
mpb
mpqc
msms
mstore
multicharge
multiwfn
namd
nest */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nlcglib science/nlcglib: New port: Nonlinear CG methods for wave-function optimization in DFT 2022-08-26 17:11:44 -07:00
nwchem
nwchem-data
octopus
openbabel */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
openems */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
openkim-models
openmc science/openmc: Update 0.13.0 -> 0.13.1 2022-08-20 10:30:28 -07:00
openmolcas science/openmolcas: Fix debug build 2022-08-20 10:48:45 -07:00
openmx
opensim-core
opensph */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
opsin science/opsin: Fix build on aarch64 2022-09-04 15:30:47 -07:00
orthanc */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
orthanc-dicomweb */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
orthanc-mysql */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
orthanc-postgresql */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
orthanc-webviewer */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
paje
paraview */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
pastix
pcmsolver
PETSc
phonopy
plumed
pnetcdf science/pnetcdf: Remove outdated post-patch: 2022-08-27 18:23:40 +08:00
precice science/{,py-}pyprecice: Update 2.4.0.0 -> 2.5.0.0 2022-08-31 11:33:02 -07:00
pulseview */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-abipy */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-access
py-asap3
py-asdf science/py-asdf: Update to 2.13.0 2022-08-31 19:41:12 +08:00
py-asdf-standard science/py-asdf-standard: Update to 1.0.3 2022-08-31 19:41:13 +08:00
py-asdf-transform-schemas science/py-asdf-transform-schemas: Update to 0.3.0 2022-08-31 19:41:13 +08:00
py-ase
py-avogadrolibs
py-cdo
py-chainer
py-chainer-chemistry
py-chempy
py-cirq-aqt
py-cirq-core
py-cirq-google
py-cirq-ionq
py-cirq-pasqal
py-cirq-rigetti
py-coards
py-DendroPy
py-dimod science/py-dimod: Update 0.11.4 -> 0.11.5 2022-08-18 00:44:55 -07:00
py-dipy
py-dlib */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-dwave-cloud-client science/py-dwave-cloud-client: Update 0.4.0 -> 0.10.1 2022-08-14 14:36:16 -07:00
py-dwave-greedy science/py-dwave-greedy: New port: DWave: Greedy binary quadratic model solvers 2022-08-14 14:36:18 -07:00
py-dwave-hybrid science/py-dwave-hybrid: New port: DWave: Hybrid asynchronous decomposition sampler prototype framework 2022-08-15 19:58:42 -07:00
py-dwave-inspector science/py-dwave-inspector: New port: DWave: Problem Inspector 2022-08-15 16:48:52 -07:00
py-dwave-neal science/py-dwave-*: Correct category 2022-08-14 11:37:55 -07:00
py-dwave-networkx science/py-dwave-*: Correct category 2022-08-14 11:37:55 -07:00
py-dwave-ocean-sdk science/py-dwave-ocean-sdk: New port: DWave: Meta-package for D-Wave's Ocean tools 2022-08-15 19:58:42 -07:00
py-dwave-preprocessing science/py-dwave-preprocessing: Fix conflict with other package 2022-08-14 14:36:17 -07:00
py-dwave-samplers science/py-dwave-samplers: Add tests 2022-08-23 11:33:53 -07:00
py-dwave-system science/py-dwave-system: New port: DWave: API for incorporating the D-Wave system as a sampler 2022-08-14 14:36:17 -07:00
py-dwave-tabu science/py-dwave-*: Correct category 2022-08-14 11:37:55 -07:00
py-dwavebinarycsp science/py-dwavebinarycsp: Remove unnecessary line and USE_PYTHON=cython 2022-08-15 19:58:41 -07:00
py-eccodes science/py-eccodes: Update to 1.5.0 2022-09-01 02:49:44 +08:00
py-esda
py-fresnel
py-geolinks
py-geomet
py-geometer
py-geometric
py-gpaw
py-GPy
py-GPyOpt
py-gsd science/py-gsd: Update 2.5.3 -> 2.6.0 2022-09-03 23:37:39 -07:00
py-h5json
py-h5py
py-hiphive
py-hoomd-blue science/py-hoomd-blue: Update 3.2.0 -> 3.4.0; Add MPI options 2022-09-04 11:30:55 -07:00
py-inequality
py-jupyter_jsmol
py-kim-query
py-kinematics
py-kliff
py-kpLib */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-liac-arff
py-libgetar
py-libpysal
py-lifelines
py-MDAnalysis science/py-MDAnalysis: Update 2.2.0 -> 2.3.0 2022-09-01 23:37:41 -07:00
py-MDAnalysisTests science/py-MDAnalysisTests: Update 2.2.0 -> 2.3.0 2022-09-01 23:37:41 -07:00
py-mdp
py-mmtf-python
py-molmod
py-moltemplate
py-netCDF4
py-netcdf-flattener
py-nibabel
py-nilearn
py-obspy
py-oddt
py-OpenFermion */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-OpenFermion-Dirac science/py-OpenFermion-Dirac: Update g20200831 -> g20220812 2022-08-12 01:12:13 -07:00
py-OpenFermion-PySCF science/py-OpenFermion-PySCF: New port: Interface between OpenFermion and PySCF 2022-08-11 17:11:19 -07:00
py-OpenMC science/py-OpenMC: Update 0.13.0 -> 0.13.1 2022-08-20 10:34:29 -07:00
py-openpiv
py-paida
py-paramz
py-penaltymodel science/py-penaltymodel: New port: DWave: Utilities and interfaces for using penalty models 2022-08-14 16:00:18 -07:00
py-phono3py
py-phonopy
py-PubChemPy
py-pupynere
py-py3Dmol science/py-py3Dmol: Update 1.8.0 -> 1.8.1 2022-08-11 13:04:34 -07:00
py-pyaixi
py-pyberny
py-pycsw
py-pydicom
py-PyFR
py-pygeodesy
py-pygeometa science/py-pygeometa: Update to 0.12.0 2022-09-01 02:49:44 +08:00
py-pygmo2 */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-pyked
py-pymatgen
py-pymbd
py-pymol
py-PyNE
py-pyosf
py-pyprecice science/{,py-}pyprecice: Update 2.4.0.0 -> 2.5.0.0 2022-08-31 11:33:02 -07:00
py-pyqubo science/py-pyqubo: New port: DWave: Python DSL for constructing QUBOs from mathematical expressions 2022-08-15 14:12:19 -07:00
py-pysal science/py-pysal: Update to 2.7.0 2022-08-27 18:24:53 +08:00
py-pyscf science/py-pyscf: Update 2.0.1 -> 2.1.0 2022-09-03 23:12:08 -07:00
py-pyteomics science/py-pyteomics: Update to 4.5.5 2022-08-31 19:41:13 +08:00
py-qcelemental
py-qcengine
py-qiskit science/py-qiskit: Update 0.37.1-4 -> 0.37.2 2022-08-24 20:38:44 -07:00
py-qiskit-aer science/py-qiskit-aer: Update 0.10.0-72 -> 0.10.4 2022-08-11 00:46:53 -07:00
py-qiskit-experiments */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-qiskit-finance science/py-qiskit-finance: Update 0.3.3.20220816 -> 0.3.4 2022-09-01 23:37:41 -07:00
py-qiskit-ibm-experiment */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-qiskit-ibm-provider */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-qiskit-ibmq-provider */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-qiskit-nature science/py-qiskit-nature: Update 0.4.3 -> 0.4.4 2022-08-16 15:16:58 -07:00
py-qiskit-optimization */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-qiskit-terra rust: bring back update to 1.63 2022-08-25 16:49:50 +02:00
py-qspin
py-quantities
py-rmf */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-rmsd
py-ruffus
py-scikit-fuzzy */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
py-scikit-learn science/py-scikit-learn: Add missing dependency joblib 2022-08-09 12:35:07 -07:00
py-scikit-optimize
py-scikit-sparse
py-scimath science/py-scimath: Update to 5.0.0 2022-08-29 23:59:57 +00:00
py-scipy science/py-scipy: Update to 1.9.0 2022-08-14 15:50:11 +08:00
py-scoria
py-segregation
py-segyio
py-SimpleSpectral
py-sklearn-pandas
py-skrebate
py-spaghetti
py-spglib
py-tensorflow
py-thewalrus
py-tobler
py-trainstation
py-tweedledum science/py-tweedledum: Correct BROKEN line 2022-08-12 00:33:46 -07:00
py-veusz
pybrain
pynn
q
qbox
qcl
qiskit-aer science/qiskit-aer: Update 0.10.0-72 -> 0.10.4 2022-08-11 00:46:53 -07:00
qmcpack */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
quantum-espresso
quantum-espresso-pseudopotentials
quantum-jet
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-ks
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
rmf */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
segyio
serac science/serac: New port: High order nonlinear thermomechanical simulation code 2022-09-05 01:15:51 -07:00
shelxle
siconos */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
siesta
sigrok-cli */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
simint
simlib
simple-dftd3
simsmith
sirius science/sirius: New port: Domain specific library for electronic structure calculations 2022-08-26 21:25:42 -07:00
smoldyn
sparta
spglib
step science/step: pet stage-qa 2022-09-05 22:06:44 +03:00
svmlight
tblite
teem
tfel */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
tfel-edf */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
thermofun
tinker
trilinos */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
tweedledum science/tweedledum: New port: Library for analysis, compilation, synthesis of quantum circuits 2022-08-07 20:35:25 -07:00
udunits
ukrmol+
v_sim */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
vipster
vmd
voro++
votca */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
wannier90
wwplot
wxmacmolplt
xcfun
xcrysden
xdrawchem */*: bump all consumers after recent boost upgrade 2022-08-12 17:46:53 +03:00
xtb
yoda
zotero science/zotero: Add missing distinfo for i386 2022-08-19 08:42:59 +02:00
Makefile science/serac: New port: High order nonlinear thermomechanical simulation code 2022-09-05 01:15:51 -07:00