3f627ab4ce
* Bump the LLVM revision used for GNUstep to 7, the minimum to support the new ABI. * GNUstep-back does not work with lld, so mark it to use Gold (BFD LD doesn't seem able to link Objective-C things). * Turn off some annoying debug logs in GNUstep back, which generate several messages per second when you move the mouse. These should never have been enabled in a release build anyway. * Downgrade Cenon to 4.0.2. This was the last version to actually work with GNUstep (the later ones use XCode >= 5 .xib files, which GNUstep can't parse). * Update gorm to git head. The current release doesn't work with the new Objective-C ABI, but -head has the patches to fix it. * Update PikoPixel and add it to the gnustep-app meta-package. * Update the three core GNUstep packages to the latest release. * Update gnumail and pantomime to the latest release and fix a linking error with the new ABI. * Update GNUstep FTP to the latest version. Reviewed by: bapt (previous version) |
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.. | ||
artemis | ||
avida | ||
babel | ||
bamtools | ||
bcftools | ||
bedtools | ||
biococoa | ||
bowtie | ||
bowtie2 | ||
bwa | ||
canu | ||
cd-hit | ||
cdbfasta | ||
checkm | ||
chemeq | ||
clustal-omega | ||
clustalw | ||
clustalx | ||
consed | ||
cytoscape | ||
ddocent | ||
diamond | ||
dsr-pdb | ||
emboss | ||
exonerate | ||
fasta | ||
fasta3 | ||
fastahack | ||
fastdnaml | ||
fastool | ||
fastqc | ||
fasttree | ||
fastx-toolkit | ||
fluctuate | ||
freebayes | ||
garlic | ||
gatk | ||
gff2ps | ||
gmap | ||
gperiodic | ||
grappa | ||
groopm | ||
hisat2 | ||
hmmer | ||
htslib | ||
hyphy | ||
igv | ||
infernal | ||
iolib | ||
iqtree | ||
jalview | ||
jellyfish | ||
kallisto | ||
lagan | ||
lamarc | ||
libgtextutils | ||
libsbml | ||
linux-foldingathome | ||
mafft | ||
mapm3 | ||
migrate | ||
molden | ||
mopac | ||
mrbayes | ||
mummer | ||
muscle | ||
ncbi-blast+ | ||
ncbi-cxx-toolkit | ||
ncbi-toolkit | ||
ngs-sdk | ||
p5-AcePerl | ||
p5-Bio-ASN1-EntrezGene | ||
p5-Bio-Coordinate | ||
p5-Bio-Das | ||
p5-Bio-Das-Lite | ||
p5-Bio-FeatureIO | ||
p5-Bio-GFF3 | ||
p5-Bio-Glite | ||
p5-Bio-Graphics | ||
p5-Bio-MAGETAB | ||
p5-Bio-NEXUS | ||
p5-Bio-Phylo | ||
p5-Bio-SCF | ||
p5-BioPerl | ||
p5-BioPerl-Run | ||
p5-transdecoder | ||
p5-TrimGalore | ||
paml | ||
pbbam | ||
pbcopper | ||
pbseqan | ||
pear-merger | ||
phrap | ||
phred | ||
phylip | ||
phyml | ||
plinkseq | ||
primer3 | ||
protomol | ||
psi88 | ||
py-biom-format | ||
py-biopython | ||
py-bx-python | ||
py-cutadapt | ||
py-fastTSNE | ||
py-Genesis-PyAPI | ||
py-gffutils | ||
py-gtfparse | ||
py-loompy | ||
py-macs2 | ||
py-orange3-bioinformatics | ||
py-orange3-single-cell | ||
py-pyfaidx | ||
py-pysam | ||
pycogent | ||
pyfasta | ||
python-nexus | ||
rainbow | ||
recombine | ||
ruby-bio | ||
rubygem-bio | ||
samtools | ||
seaview | ||
seqan | ||
seqan1 | ||
seqan-apps | ||
seqio | ||
seqtk | ||
seqtools | ||
sim4 | ||
slclust | ||
smithwaterman | ||
stacks | ||
stringtie | ||
t_coffee | ||
tabixpp | ||
treepuzzle | ||
trimadap | ||
trimmomatic | ||
tRNAscan-SE | ||
ugene | ||
unanimity | ||
vcflib | ||
vcftools | ||
velvet | ||
wise | ||
Makefile |