| .. |
|
artemis
|
|
|
|
avida
|
Change cmake default behaviour to outsource.
|
2018-12-25 20:25:39 +00:00 |
|
babel
|
|
|
|
bamtools
|
Change cmake default behaviour to outsource.
|
2018-12-25 20:25:39 +00:00 |
|
bcftools
|
|
|
|
bedtools
|
|
|
|
biococoa
|
Move Objective-C ports to the v2 GNUstep ABI.
|
2019-02-03 15:37:58 +00:00 |
|
bowtie
|
|
|
|
bowtie2
|
|
|
|
bwa
|
|
|
|
canu
|
|
|
|
cd-hit
|
|
|
|
cdbfasta
|
|
|
|
checkm
|
|
|
|
chemeq
|
|
|
|
clustal-omega
|
|
|
|
clustalw
|
|
|
|
clustalx
|
|
|
|
consed
|
|
|
|
cytoscape
|
|
|
|
ddocent
|
|
|
|
diamond
|
biology/diamond: Update to version 0.9.24
|
2018-12-31 19:00:00 +00:00 |
|
dsr-pdb
|
New port: biology/dsr-pdb: Simple C++ PDB reader (reads the protein description format)
|
2019-01-29 07:56:30 +00:00 |
|
emboss
|
|
|
|
exonerate
|
|
|
|
fasta
|
|
|
|
fasta3
|
|
|
|
fastahack
|
|
|
|
fastdnaml
|
|
|
|
fastool
|
|
|
|
fastqc
|
|
|
|
fasttree
|
|
|
|
fastx-toolkit
|
|
|
|
figtree
|
New port: biology/figtree: Graphical viewer of phylogenetic trees
|
2019-02-03 21:14:38 +00:00 |
|
fluctuate
|
|
|
|
freebayes
|
|
|
|
garlic
|
|
|
|
gatk
|
|
|
|
gff2ps
|
|
|
|
gmap
|
|
|
|
gperiodic
|
|
|
|
graphlan
|
New port: biology/graphlan: High-quality circular representations of taxonomic, phylogenetic trees
|
2019-02-03 20:13:26 +00:00 |
|
grappa
|
|
|
|
groopm
|
biology/groopm fails to build with python3
|
2019-01-07 09:44:42 +00:00 |
|
hisat2
|
New port: biology/hisat2: Program for mapping next-generation sequencing reads
|
2019-01-11 16:02:05 +00:00 |
|
hmmer
|
|
|
|
htslib
|
|
|
|
hyphy
|
Change cmake default behaviour to outsource.
|
2018-12-25 20:25:39 +00:00 |
|
igv
|
|
|
|
infernal
|
|
|
|
iolib
|
|
|
|
iqtree
|
biology/iqtree: switch to outsource cmake build
|
2018-12-27 18:34:44 +00:00 |
|
jalview
|
|
|
|
jellyfish
|
|
|
|
kallisto
|
Update science/hdf5 to 1.10.4
|
2019-01-05 22:46:53 +00:00 |
|
lagan
|
|
|
|
lamarc
|
|
|
|
libgtextutils
|
|
|
|
libsbml
|
Change cmake default behaviour to outsource.
|
2018-12-25 20:25:39 +00:00 |
|
linux-foldingathome
|
|
|
|
mafft
|
|
|
|
mapm3
|
|
|
|
migrate
|
|
|
|
molden
|
|
|
|
mopac
|
|
|
|
mrbayes
|
|
|
|
mummer
|
|
|
|
muscle
|
|
|
|
ncbi-blast+
|
Update dns/libidn2 to 2.1.0
|
2019-01-06 20:39:43 +00:00 |
|
ncbi-cxx-toolkit
|
|
|
|
ncbi-toolkit
|
Update dns/libidn2 to 2.1.0
|
2019-01-06 20:39:43 +00:00 |
|
ngs-sdk
|
|
|
|
p5-AcePerl
|
|
|
|
p5-Bio-ASN1-EntrezGene
|
|
|
|
p5-Bio-Coordinate
|
|
|
|
p5-Bio-Das
|
|
|
|
p5-Bio-Das-Lite
|
|
|
|
p5-Bio-FeatureIO
|
|
|
|
p5-Bio-GFF3
|
|
|
|
p5-Bio-Glite
|
|
|
|
p5-Bio-Graphics
|
|
|
|
p5-Bio-MAGETAB
|
|
|
|
p5-Bio-NEXUS
|
|
|
|
p5-Bio-Phylo
|
|
|
|
p5-Bio-SCF
|
|
|
|
p5-BioPerl
|
|
|
|
p5-BioPerl-Run
|
|
|
|
p5-transdecoder
|
|
|
|
p5-TrimGalore
|
|
|
|
paml
|
|
|
|
pbbam
|
|
|
|
pbcopper
|
|
|
|
pbseqan
|
|
|
|
pear-merger
|
|
|
|
phrap
|
|
|
|
phred
|
|
|
|
phylip
|
|
|
|
phyml
|
|
|
|
plinkseq
|
|
|
|
primer3
|
|
|
|
prodigal
|
New port: biology/prodigal: Protein-coding gene prediction for prokaryotic genomes
|
2019-02-03 18:08:14 +00:00 |
|
prodigy-lig
|
New port: biology/prodigy-lig: Prediction of protein-small molecule binding affinities
|
2019-02-03 18:49:23 +00:00 |
|
protomol
|
|
|
|
psi88
|
|
|
|
py-biom-format
|
|
|
|
py-biopython
|
- Update to 1.73
|
2018-12-22 04:54:51 +00:00 |
|
py-bx-python
|
|
|
|
py-cutadapt
|
|
|
|
py-fastTSNE
|
|
|
|
py-Genesis-PyAPI
|
|
|
|
py-gffutils
|
|
|
|
py-gtfparse
|
|
|
|
py-loompy
|
biology/py-loompy: Update 2.0.16 -> 2.0.17
|
2019-02-02 21:38:48 +00:00 |
|
py-macs2
|
|
|
|
py-orange3-bioinformatics
|
Fix Qt5 symbol version scripts to put the catch-all clause first. When
|
2019-01-16 11:13:44 +00:00 |
|
py-orange3-single-cell
|
Fix Qt5 symbol version scripts to put the catch-all clause first. When
|
2019-01-16 11:13:44 +00:00 |
|
py-pyfaidx
|
|
|
|
py-pysam
|
biology/py-pysam: Update 0.15.1 -> 0.15.2
|
2019-01-26 04:15:54 +00:00 |
|
pycogent
|
|
|
|
pyfasta
|
|
|
|
python-nexus
|
|
|
|
rainbow
|
|
|
|
recombine
|
|
|
|
ruby-bio
|
|
|
|
rubygem-bio
|
|
|
|
samtools
|
|
|
|
seaview
|
|
|
|
seqan
|
|
|
|
seqan1
|
|
|
|
seqan-apps
|
Change cmake default behaviour to outsource.
|
2018-12-25 20:25:39 +00:00 |
|
seqio
|
|
|
|
seqtk
|
|
|
|
seqtools
|
biology/seqtools: fix build on current, if lld is lld7
|
2019-01-07 19:54:40 +00:00 |
|
sim4
|
|
|
|
slclust
|
|
|
|
smithwaterman
|
|
|
|
stacks
|
biology/stacks: Upgrade to 2.3
|
2019-01-12 15:53:00 +00:00 |
|
stringtie
|
|
|
|
t_coffee
|
|
|
|
tabixpp
|
|
|
|
treepuzzle
|
|
|
|
trimadap
|
|
|
|
trimmomatic
|
|
|
|
tRNAscan-SE
|
|
|
|
ugene
|
Fix Qt5 symbol version scripts to put the catch-all clause first. When
|
2019-01-16 11:13:44 +00:00 |
|
unanimity
|
Change cmake default behaviour to outsource.
|
2018-12-25 20:25:39 +00:00 |
|
vcflib
|
|
|
|
vcftools
|
|
|
|
velvet
|
|
|
|
wise
|
|
|
|
Makefile
|
New port: biology/figtree: Graphical viewer of phylogenetic trees
|
2019-02-03 21:14:38 +00:00 |
