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freebsd-ports/science
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Rene Ladan ff360ff948 Remove expired ports not depending on Python 2.7: 
2020-12-31 devel/arm-none-eabi-gdb: This is an old, obsolete version of gdb
2020-12-31 devel/pecl-weakref2: PHP 7.2 extension
2020-12-31 graphics/py-imageio24: Use graphics/py-imageio instead
2020-12-31 mail/bogofilter-tc: TokyoCabinet is being phased out in favor of KyotoCabinet.
2020-12-31 net/pecl-yaz: PHP 7.2 extension
2020-12-31 print/cloudprint: Google Cloud Print is being shut down by Google by end of 2020
2020-12-31 science/py-eccodes-python: Use science/py-eccodes instead
2020-12-31 sysutils/cfengine-masterfiles312: EOL
2020-12-31 sysutils/cfengine-masterfiles313: EOL
2020-12-31 sysutils/cfengine312: EOL
2020-12-31 sysutils/cfengine313: EOL
2020-12-31 sysutils/rubygem-chef-zero5: Please use sysutils/rubygem-chef-zero instead
2020-12-31 sysutils/syslog-ng325: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng326: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng328: Reduction of syslog-ng ports to one
2020-12-31 sysutils/syslog-ng329: Reduction of syslog-ng ports to one
2020-12-31 www/flashplayer: Depends on a deprecated port
2020-12-31 www/linux-flashplayer: Deprecated by upstream
2020-12-31 www/mediawiki133: Upstream end of life
2020-12-31 www/mediawiki134: Upstream end of life
2020-12-31 www/py-aiohttp2: Use www/py-aiohttp instead

sysutils/drm-legacy-kmod is left in for now.
2020-12-31 15:07:01 +00:00
..
2d-rewriter
abinit
afni science/afni: update to 20.3.04 2020-12-27 13:06:51 +00:00
agrum
aircraft-datcom
ALPSCore - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
antioch - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
apbs
atompaw
avogadro2
avogadrolibs - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
axom
bagel
bddsolve
berkeleygw
bodr
buddy
cdcl
cdf
cdk
cdo
cgnslib science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with 2020-12-26 11:48:36 +00:00
cgribex
checkmol
chemical-mime-data
chemps2
chemtool
chemtool-devel
chrono - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
clhep
clipper
code_saturne Upgrade to 6.1.3 and enable Python bindings for PLE. 2020-12-23 18:37:11 +00:00
colt
conduit
coordgenlibs
cp2k
cp2k-data
crf++
dalton
dcl
devisor
dftbplus
dkh
dlib-cpp
dlpoly-classic
drawxtl
dvc scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
eccodes
elk
elmerfem
epte
erd
ergo
erkale
erkale-pseudopotentials
fastcap
fasthenry
fastjet
fisicalab
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gchemutils
gdma
getdp
ghemical
ghmm
gnudatalanguage - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
gpaw-setups
gramps
grib_api
gromacs science/gromacs: Turn the option FLOAT to OFF by default 2020-12-18 05:40:05 +00:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
healpix
hepmc3 science/hepmc3: Update 3.2.2 -> 3.2.3 2020-12-17 04:23:50 +00:00
highfive
hypre
iboview
InsightToolkit - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
isaac-cfd
jdftx
jmol science/jmol: Update 14.31.18 -> 14.31.20 2020-12-20 06:30:17 +00:00
jstrack
kalzium Update KDE Applications to 20.12 2020-12-11 19:18:03 +00:00
kim-api science/kim-api: Update 2.2.0 -> 2.2.1 2020-12-14 05:31:14 +00:00
kst2
lammps science/lammps: Update 30Nov2020 -> 24Dec2020 2020-12-24 21:05:44 +00:00
lamprop
latte Do not include bsd.port.mk twice 2020-12-08 09:30:36 +00:00
libaec
libccp4
libcint science/libcint: Update 4.0.6 -> 4.0.7 2020-12-20 01:00:36 +00:00
libctl
libefp
libgeodecomp Modify cad/scotch to support int64. 2020-12-09 19:29:19 +00:00
libghemical
libgridxc
libint
libint2
libkml
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
luscus
madness
maeparser
massxpert
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
molgif
molscript
molsketch
mpb
mpqc
msms
multiwfn
namd
nest science/nest: Update 2.20.0 -> 2.20.1 2020-12-06 09:22:22 +00:00
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nwchem
nwchem-data
octopus
openbabel - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
openkim
openkim-models
opensim-core
opensph - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
paje
pcmsolver science/pcmsolver: Update 1.2.3 -> 1.3.0 2020-12-03 10:49:31 +00:00
PETSc Rescue PETSc by upgrading to 3.14.1, and thus switch to Python 3.x. 2020-12-16 16:19:30 +00:00
plumed
pnetcdf
pulseview
py-abipy
py-asdf Move devel/py-semantic_version to devel/py-semantic-version 2020-12-05 13:47:27 +00:00
py-ase
py-avogadrolibs Mark BROKEN 2020-12-25 09:16:26 +00:00
py-cdo Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-chainer Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-chainer-chemistry
py-chempy science/py-chempy: Update 0.7.12 -> 0.8.1 2020-12-06 22:32:36 +00:00
py-coards Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-DendroPy Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-dlib Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-eccodes Add py-eccodes 1.0.0 (copied from py-eccodes-python) 2020-12-19 20:04:12 +00:00
py-geolinks Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-geomet Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-geometer
py-geometric
py-gpaw Relax hardcoded paths to fix build with Python 3.8.7 2020-12-24 13:46:01 +00:00
py-GPy scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-GPyOpt scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-gsd Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-h5json Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-h5py Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-jupyter_jsmol Adding jupyter-jsmol, a JSmol viewer widget for Jupyter Notebooks and 2020-12-22 11:48:07 +00:00
py-kim-query Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-kinematics Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-kliff science/py-kliff: Update 0.1.6 -> 0.1.7 2020-12-23 00:56:10 +00:00
py-liac-arff Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-mmtf-python Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-molmod Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-moltemplate Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-netCDF4 Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-netcdf-flattener Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-obspy
py-oddt
py-OpenFermion
py-openpiv
py-paida Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-paramz scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-phono3py
py-phonopy
py-pupynere Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-pyaixi Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-pycsw Update to 2.6.0 2020-12-19 20:10:44 +00:00
py-pydicom - Update to 2.1.2 2020-12-12 00:54:58 +00:00
py-PyFR
py-pygeodesy Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-pygeometa Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-pygmo2
py-pymatgen
py-pymol science/py-pymol: switch to PYTHON_EXT_SUFFIX 2020-12-24 13:37:40 +00:00
py-pyosf Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-pysal scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-pyteomics
py-qcelemental
py-qcengine
py-qspin scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-quantities Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-rmf Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-rmsd scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-ruffus Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize
py-scikit-sparse Relax hardcoded paths to fix build with Python 3.8.7 2020-12-24 13:46:01 +00:00
py-scimath
py-scipy science/py-scipy: Remove the recently added USES=blaslapack:openblas because LIB_DEPENDS=libblas.so:math/blas provides blas 2020-12-25 05:41:53 +00:00
py-scoria scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-segyio Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-SimpleSpectral
py-spglib Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-tensorflow
py-veusz Update PyQt5 to 5.15.2, sip to 5.5.0, py-qtbuilder to 1.6.0 and py-qt5-sip to 12.8.1 2020-12-15 17:56:00 +00:00
pybrain scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
pynn - Update to 0.9.6 2020-12-31 08:19:47 +00:00
qbox science/qbox: Update 1.72.2 -> 1.72.3 2020-12-15 06:01:05 +00:00
qcl
qiskit-aer
qmcpack
quantum-espresso science/quantum-espresso: Update 6.6 -> 6.7.0 2020-12-03 20:51:28 +00:00
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit science/rdkit: Update 2018.09.3 -> 2020.09.3 2020-12-13 22:00:58 +00:00
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis Update Qt/PySide2 to 5.15.2 / PyQt to 5.15.1 / SIP to 5.4.0 2020-12-08 20:03:07 +00:00
segyio science/segyio: Update 1.9.4 -> 1.9.5 2020-12-17 20:35:23 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid
simint
simlib
simsmith
smoldyn science/smoldyn: Update 2.62 -> 2.63 2020-12-20 06:45:09 +00:00
sparta
spglib
step - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
svmlight
szip
teem
tfel Upgrade to 3.4.0 2020-12-13 14:48:11 +00:00
tfel-edf Fix for GCC_DEFAULT=10. 2020-12-21 16:37:23 +00:00
tinker
udunits
v_sim
vipster science/vipster: Update 1.18b.20200514 -> 1.19.1b-14 2020-12-22 11:06:15 +00:00
vmd
voro++
votca science/votca: Update 1.6.2 -> 1.6.3 2020-12-18 05:40:58 +00:00
wannier90 science/wannier90: Fix registration of libwannier in ldconfig by adding the symlink; Add the 'test' target. 2020-12-27 02:31:00 +00:00
wwplot
wxmacmolplt
xcrysden science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with 2020-12-26 11:48:36 +00:00
xdrawchem
xfce4-equake-plugin
xtb
yoda science/yoda: Update 1.8.4 -> 1.8.5 2020-12-06 20:30:15 +00:00
Makefile Remove expired ports not depending on Python 2.7: 2020-12-31 15:07:01 +00:00