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abyss
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devel/openmp: phase out
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2019-05-08 16:05:53 +00:00 |
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artemis
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avida
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babel
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bamtools
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bcftools
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bedtools
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biology/bedtools: unbreak with libc++ 8
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2019-03-04 06:55:08 +00:00 |
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biococoa
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bowtie
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bowtie2
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biology/bowtie2: Clarify CPU-specificity
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2019-04-24 17:41:27 +00:00 |
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bwa
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canu
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biology/canu: Fix build on powerpc64 and aarch64
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2019-04-18 12:15:56 +00:00 |
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cd-hit
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biology/cd-hit: Upgrade to 4.8.1
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2019-03-14 23:59:47 +00:00 |
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cdbfasta
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checkm
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Bump a few PORTREVISIONs after r498529
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2019-04-10 06:18:31 +00:00 |
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chemeq
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clustal-omega
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clustalw
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consed
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cytoscape
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ddocent
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biology/ddocent: Upgrade to 2.7.8
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2019-05-04 15:09:10 +00:00 |
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diamond
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dsr-pdb
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devel/boost-*: update to 1.70.0
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2019-04-12 06:36:31 +00:00 |
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emboss
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exonerate
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fasta
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fasta3
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fastahack
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fastdnaml
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fastool
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fastp
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biology/fastp: Respect WITH_DEBUG - do not strip binary
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2019-05-04 02:07:07 +00:00 |
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fastqc
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fasttree
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fastx-toolkit
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figtree
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New port: biology/figtree: Graphical viewer of phylogenetic trees
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2019-02-03 21:14:38 +00:00 |
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fluctuate
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freebayes
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garlic
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gatk
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gemma
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biology/gemma: Lowercase PORTNAME, remove unnecesary USE_GCC
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2019-05-18 22:41:15 +00:00 |
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gff2ps
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gmap
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gperiodic
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graphlan
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New port: biology/graphlan: High-quality circular representations of taxonomic, phylogenetic trees
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2019-02-03 20:13:26 +00:00 |
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grappa
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groopm
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hhsuite
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New port: biology/hhsuite: Remote protein homology detection suite
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2019-05-19 06:52:38 +00:00 |
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hisat2
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hmmer
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vec_splats function is not supported by base GCC. Add USES=compiler:c11
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2019-02-18 01:30:24 +00:00 |
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htslib
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hyphy
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igv
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biology/igv: Update 2.5.0 -> 2.5.2
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2019-05-11 05:59:29 +00:00 |
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infernal
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iolib
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- Fix build in head i386
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2019-04-01 19:33:15 +00:00 |
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iqtree
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biology/iqtree: Update to version 1.6.10
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2019-02-21 14:33:43 +00:00 |
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jalview
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jellyfish
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biology/jellyfish: Upgrade to 2.2.10, patch for powerpc64
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2019-05-13 16:23:35 +00:00 |
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kallisto
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kallisto: Upgrade to 0.45.1, unbundle hstlib
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2019-02-24 20:32:19 +00:00 |
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lagan
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lamarc
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libgtextutils
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libsbml
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- Update to 5.18.0
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2019-05-20 09:12:41 +00:00 |
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linux-foldingathome
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mafft
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mapm3
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migrate
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minimap2
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biology/minimap2: Upgrade to 2.17
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2019-05-05 14:56:07 +00:00 |
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molden
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Related to revision 499061 bump ports with USES=fortran to have them
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2019-04-22 13:16:33 +00:00 |
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mopac
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Related to revision 499061 bump ports with USES=fortran to have them
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2019-04-22 13:16:33 +00:00 |
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mothur
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New port: biology/mothur: Software for bioinformatics of the microbial ecology community
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2019-05-20 17:59:17 +00:00 |
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mrbayes
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Update devel/readline to 8.0
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2019-04-09 14:04:49 +00:00 |
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mummer
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muscle
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ncbi-blast+
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Update dns/libidn2 to 2.1.1
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2019-02-09 23:25:36 +00:00 |
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ncbi-cxx-toolkit
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ncbi-toolkit
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Update dns/libidn2 to 2.1.1
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2019-02-09 23:25:36 +00:00 |
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ngs-sdk
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biology/ngs-sdk: Update 2.9.4 -> 2.9.6
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2019-03-31 03:31:59 +00:00 |
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p5-AcePerl
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Cluster
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Add p5-Bio-Cluster 1.7.3
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2019-02-20 20:46:37 +00:00 |
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p5-Bio-Coordinate
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-FeatureIO
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p5-Bio-GFF3
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p5-Bio-Glite
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p5-Bio-Graphics
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p5-Bio-MAGETAB
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Fix typo
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2019-04-23 14:11:50 +00:00 |
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p5-Bio-NEXUS
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p5-Bio-Phylo
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p5-Bio-SCF
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- Add LICENSE
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2019-03-30 09:01:08 +00:00 |
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p5-BioPerl
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Update to 1.007005 (1.7.5)
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2019-02-22 19:54:12 +00:00 |
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p5-BioPerl-Run
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Update to 1.007003
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2019-02-20 20:46:58 +00:00 |
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p5-transdecoder
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p5-TrimGalore
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biology/p5-TrimGalore: Upgrade to 0.6.1
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2019-03-24 21:44:17 +00:00 |
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paml
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biology/paml: Update to version 4.9i
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2019-02-26 15:12:42 +00:00 |
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pbbam
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devel/boost-*: update to 1.70.0
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2019-04-12 06:36:31 +00:00 |
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pbcopper
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devel/boost-*: update to 1.70.0
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2019-04-12 06:36:31 +00:00 |
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pbseqan
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biology/pbseqan: Mark deprecated
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2019-02-20 01:53:35 +00:00 |
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pear-merger
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phrap
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phred
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phylip
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phyml
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- Update to 3.3.20190321
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2019-05-20 09:17:29 +00:00 |
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plinkseq
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primer3
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prodigal
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prodigy-lig
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protomol
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psi88
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Related to revision 499061 bump ports with USES=fortran to have them
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2019-04-22 13:16:33 +00:00 |
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py-biom-format
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Bump a few PORTREVISIONs after r498529
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2019-04-10 06:18:31 +00:00 |
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py-biopython
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py-bx-python
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py-cutadapt
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biology/py-cutadapt: Upgrade to 2.3
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2019-04-27 01:26:17 +00:00 |
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py-dnaio
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biology/py-dnaio: Read and write FASTQ and FASTA
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2019-03-24 19:40:26 +00:00 |
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py-fastTSNE
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devel/openmp: phase out
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2019-05-08 16:05:53 +00:00 |
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py-Genesis-PyAPI
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py-gffutils
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Bump a few PORTREVISIONs after r498529
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2019-04-10 06:18:31 +00:00 |
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py-gtfparse
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py-loompy
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py-macs2
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py-orange3-bioinformatics
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py-orange3-single-cell
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py-pyfaidx
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Bump a few PORTREVISIONs after r498529
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2019-04-10 06:18:31 +00:00 |
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py-pysam
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py-xenaPython
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New port: biology/py-xenaPython: API for Xena Hub to access genetic information shared through the hub
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2019-04-12 17:01:10 +00:00 |
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pycogent
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pyfasta
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- Update WWW
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2019-02-07 09:30:40 +00:00 |
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python-nexus
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rainbow
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recombine
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ruby-bio
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rubygem-bio
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samtools
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seaview
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seqan
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seqan1
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seqan-apps
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devel/boost-*: update to 1.70.0
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2019-04-12 06:36:31 +00:00 |
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seqio
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seqtk
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seqtools
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sim4
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slclust
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smithwaterman
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stacks
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biology/stacks: Remove obsolete pkg-message regarding web interface
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2019-05-10 21:15:42 +00:00 |
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star
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biology/star: Force newer GCC on platforms with GCC 4.2 base
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2019-05-02 00:39:51 +00:00 |
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stringtie
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t_coffee
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Related to revision 499061 bump ports with USES=fortran to have them
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2019-04-22 13:16:33 +00:00 |
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tabixpp
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treepuzzle
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trimadap
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biology/trimadap: Mark only for amd64 and i386
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2019-05-11 00:18:24 +00:00 |
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trimmomatic
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tRNAscan-SE
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biology/tRNAscan-SE: fix build with GCC-based architectures
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2019-05-07 19:45:17 +00:00 |
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ugene
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unanimity
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Clean up plist
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2019-04-25 13:25:50 +00:00 |
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vcflib
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vcftools
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velvet
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vsearch
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biology/vsearch: Update to 2.13.4
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2019-05-11 13:42:33 +00:00 |
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wise
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Makefile
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New port: biology/mothur: Software for bioinformatics of the microbial ecology community
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2019-05-20 17:59:17 +00:00 |
