biology/minimap2: Upgrade to 2.17
Reported by: portscout
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parent
490f8e029a
commit
21a82c027a
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=500860
@ -2,7 +2,7 @@
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PORTNAME= minimap2
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DISTVERSIONPREFIX= v
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DISTVERSION= 2.16
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DISTVERSION= 2.17
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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@ -1,3 +1,3 @@
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TIMESTAMP = 1555901297
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SHA256 (lh3-minimap2-v2.16_GH0.tar.gz) = 9d4f1c9f1c2b29c2560b7ad53b2210dabd82161a0f88184f423534bd289433c3
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SIZE (lh3-minimap2-v2.16_GH0.tar.gz) = 221287
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TIMESTAMP = 1557067380
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SHA256 (lh3-minimap2-v2.17_GH0.tar.gz) = 0a3eaa3ef3d9f9e41f48199cc4aac0508366ac644fc3e8fe05e3463acd23d20b
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SIZE (lh3-minimap2-v2.17_GH0.tar.gz) = 224006
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@ -1,8 +1,10 @@
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--- Makefile.orig 2019-02-28 20:49:24 UTC
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--- Makefile.orig 2019-05-05 03:49:17 UTC
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+++ Makefile
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@@ -1,11 +1,19 @@
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@@ -1,11 +1,21 @@
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-CFLAGS= -g -Wall -O2 -Wc++-compat #-Wextra
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-CPPFLAGS= -DHAVE_KALLOC
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+# Patches using ?= and adding install target were rejected by developers
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+# https://github.com/lh3/minimap2/issues/388
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+CFLAGS?= -g -Wall -O2
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+CFLAGS+= -Wc++-compat #-Wextra
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+CPPFLAGS+= -DHAVE_KALLOC
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@ -22,7 +24,7 @@
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ifeq ($(arm_neon),) # if arm_neon is not defined
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ifeq ($(sse2only),) # if sse2only is not defined
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OBJS+=ksw2_extz2_sse41.o ksw2_extd2_sse41.o ksw2_exts2_sse41.o ksw2_extz2_sse2.o ksw2_extd2_sse2.o ksw2_exts2_sse2.o ksw2_dispatch.o
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@@ -84,6 +92,15 @@ ksw2_exts2_neon.o:ksw2_exts2_sse.c ksw2.h kalloc.h
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@@ -84,6 +94,15 @@ ksw2_exts2_neon.o:ksw2_exts2_sse.c ksw2.h kalloc.h
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$(CC) -c $(CFLAGS) $(CPPFLAGS) -DKSW_SSE2_ONLY -D__SSE2__ $(INCLUDES) $< -o $@
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# other non-file targets
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