| .. |
|
2d-rewriter
|
|
|
|
abinit
|
science/abinit: Update 8.10.3 -> 9.2.2
|
2021-01-02 00:42:00 +00:00 |
|
afni
|
science/afni: update to 20.3.04
|
2020-12-27 13:06:51 +00:00 |
|
agrum
|
|
|
|
aircraft-datcom
|
|
|
|
ALPSCore
|
- Upgrade math/eigen3 to 3.3.8;
|
2020-12-12 17:04:37 +00:00 |
|
antioch
|
- Upgrade math/eigen3 to 3.3.8;
|
2020-12-12 17:04:37 +00:00 |
|
apbs
|
|
|
|
atompaw
|
|
|
|
avogadro2
|
|
|
|
avogadrolibs
|
- Upgrade math/eigen3 to 3.3.8;
|
2020-12-12 17:04:37 +00:00 |
|
axom
|
|
|
|
bagel
|
|
|
|
bddsolve
|
|
|
|
berkeleygw
|
|
|
|
bodr
|
|
|
|
buddy
|
|
|
|
cdcl
|
|
|
|
cdf
|
|
|
|
cdk
|
|
|
|
cdo
|
|
|
|
cgnslib
|
science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with
|
2020-12-26 11:48:36 +00:00 |
|
cgribex
|
|
|
|
checkmol
|
|
|
|
chemical-mime-data
|
|
|
|
chemps2
|
|
|
|
chemtool
|
|
|
|
chemtool-devel
|
|
|
|
chrono
|
- Upgrade math/eigen3 to 3.3.8;
|
2020-12-12 17:04:37 +00:00 |
|
clhep
|
|
|
|
clipper
|
|
|
|
code_saturne
|
Upgrade to 6.1.3 and enable Python bindings for PLE.
|
2020-12-23 18:37:11 +00:00 |
|
colt
|
|
|
|
conduit
|
|
|
|
coordgenlibs
|
|
|
|
cp2k
|
|
|
|
cp2k-data
|
|
|
|
crf++
|
|
|
|
dalton
|
|
|
|
dcl
|
|
|
|
devisor
|
|
|
|
dftbplus
|
|
|
|
dkh
|
|
|
|
dlib-cpp
|
|
|
|
dlpoly-classic
|
|
|
|
drawxtl
|
|
|
|
dvc
|
scipy 1.5.4 is only compatible with python 3.6+
|
2020-12-24 09:03:39 +00:00 |
|
eccodes
|
|
|
|
elk
|
Mark BROKEN: missing LIB_DEPENDS
|
2021-01-01 21:01:27 +00:00 |
|
elmerfem
|
|
|
|
epte
|
|
|
|
erd
|
|
|
|
ergo
|
|
|
|
erkale
|
|
|
|
erkale-pseudopotentials
|
|
|
|
fastcap
|
Mark ports that are BROKEN due to sbrk on aarch64, also BROKEN on riscv64
|
2021-01-01 23:51:48 +00:00 |
|
fasthenry
|
Mark ports that are BROKEN due to sbrk on aarch64, also BROKEN on riscv64
|
2021-01-01 23:51:48 +00:00 |
|
fastjet
|
|
|
|
fisicalab
|
|
|
|
fsom
|
|
|
|
fvcom
|
|
|
|
fvcom-mpi
|
|
|
|
gabedit
|
|
|
|
gamess-us
|
|
|
|
gchemutils
|
|
|
|
gdma
|
|
|
|
getdp
|
|
|
|
ghemical
|
|
|
|
ghmm
|
|
|
|
gnudatalanguage
|
- Upgrade math/eigen3 to 3.3.8;
|
2020-12-12 17:04:37 +00:00 |
|
gpaw-setups
|
|
|
|
gramps
|
|
|
|
grib_api
|
|
|
|
gromacs
|
science/gromacs: Turn the option FLOAT to OFF by default
|
2020-12-18 05:40:05 +00:00 |
|
gsmc
|
|
|
|
gtamsanalyzer
|
|
|
|
h5utils
|
|
|
|
h5z-zfp
|
|
|
|
harminv
|
|
|
|
hdf
|
|
|
|
hdf5
|
|
|
|
hdf5-18
|
|
|
|
healpix
|
|
|
|
hepmc3
|
science/hepmc3: Update 3.2.2 -> 3.2.3
|
2020-12-17 04:23:50 +00:00 |
|
highfive
|
|
|
|
hypre
|
|
|
|
iboview
|
|
|
|
InsightToolkit
|
- Upgrade math/eigen3 to 3.3.8;
|
2020-12-12 17:04:37 +00:00 |
|
isaac-cfd
|
|
|
|
jdftx
|
|
|
|
jmol
|
science/jmol: Update 14.31.18 -> 14.31.20
|
2020-12-20 06:30:17 +00:00 |
|
jstrack
|
|
|
|
kalzium
|
Update KDE Applications to 20.12
|
2020-12-11 19:18:03 +00:00 |
|
kim-api
|
science/kim-api: Update 2.2.0 -> 2.2.1
|
2020-12-14 05:31:14 +00:00 |
|
kst2
|
|
|
|
lammps
|
science/lammps: Update 30Nov2020 -> 24Dec2020
|
2020-12-24 21:05:44 +00:00 |
|
lamprop
|
|
|
|
latte
|
Do not include bsd.port.mk twice
|
2020-12-08 09:30:36 +00:00 |
|
libaec
|
|
|
|
libccp4
|
|
|
|
libcint
|
science/libcint: Update 4.0.6 -> 4.0.7
|
2020-12-20 01:00:36 +00:00 |
|
libctl
|
|
|
|
libefp
|
|
|
|
libgeodecomp
|
Modify cad/scotch to support int64.
|
2020-12-09 19:29:19 +00:00 |
|
libghemical
|
|
|
|
libgridxc
|
|
|
|
libint
|
|
|
|
libint2
|
|
|
|
libkml
|
|
|
|
liblinear
|
|
|
|
libmsym
|
|
|
|
liboglappth
|
|
|
|
libquantum
|
|
|
|
libssm
|
|
|
|
libsvm
|
|
|
|
libsvm-python
|
|
|
|
libvdwxc
|
|
|
|
libxc
|
|
|
|
liggghts
|
|
|
|
luscus
|
|
|
|
madness
|
|
|
|
maeparser
|
|
|
|
massxpert
|
|
|
|
mbdyn
|
|
|
|
mcstas
|
|
|
|
mcstas-comps
|
|
|
|
mcxtrace
|
|
|
|
mcxtrace-comps
|
|
|
|
mdynamix
|
|
|
|
medit
|
|
|
|
metaphysicl
|
|
|
|
minc2
|
|
|
|
mmdb2
|
|
|
|
mmtf-cpp
|
|
|
|
mol2ps
|
|
|
|
molgif
|
|
|
|
molscript
|
|
|
|
molsketch
|
|
|
|
mpb
|
|
|
|
mpqc
|
|
|
|
msms
|
|
|
|
multiwfn
|
|
|
|
namd
|
|
|
|
nest
|
science/nest: Update 2.20.0 -> 2.20.1
|
2020-12-06 09:22:22 +00:00 |
|
netcdf
|
|
|
|
netcdf-cxx
|
|
|
|
netcdf-fortran
|
|
|
|
nifticlib
|
|
|
|
nwchem
|
|
|
|
nwchem-data
|
|
|
|
octopus
|
|
|
|
openbabel
|
- Upgrade math/eigen3 to 3.3.8;
|
2020-12-12 17:04:37 +00:00 |
|
openkim
|
|
|
|
openkim-models
|
|
|
|
opensim-core
|
|
|
|
opensph
|
- Upgrade math/eigen3 to 3.3.8;
|
2020-12-12 17:04:37 +00:00 |
|
opsin
|
|
|
|
p5-Algorithm-SVMLight
|
|
|
|
p5-Chemistry-3DBuilder
|
|
|
|
p5-Chemistry-Bond-Find
|
|
|
|
p5-Chemistry-Canonicalize
|
|
|
|
p5-Chemistry-Elements
|
|
|
|
p5-Chemistry-File-MDLMol
|
|
|
|
p5-Chemistry-File-Mopac
|
|
|
|
p5-Chemistry-File-PDB
|
|
|
|
p5-Chemistry-File-SLN
|
|
|
|
p5-Chemistry-File-SMARTS
|
|
|
|
p5-Chemistry-File-SMILES
|
|
|
|
p5-Chemistry-File-VRML
|
|
|
|
p5-Chemistry-File-XYZ
|
|
|
|
p5-Chemistry-FormulaPattern
|
|
|
|
p5-Chemistry-InternalCoords
|
|
|
|
p5-Chemistry-Isotope
|
|
|
|
p5-Chemistry-MacroMol
|
|
|
|
p5-Chemistry-MidasPattern
|
|
|
|
p5-Chemistry-Mok
|
|
|
|
p5-Chemistry-Mol
|
|
|
|
p5-Chemistry-Pattern
|
|
|
|
p5-Chemistry-Reaction
|
|
|
|
p5-Chemistry-Ring
|
|
|
|
p5-Geo-BUFR
|
|
|
|
p5-Geo-Coordinates-Converter
|
|
|
|
p5-Geo-Coordinates-Converter-iArea
|
|
|
|
p5-Geo-WebService-Elevation-USGS
|
|
|
|
p5-Mcstas-Tools
|
|
|
|
p5-PerlMol
|
|
|
|
p5-Physics-Unit
|
|
|
|
packmol
|
|
|
|
pagmo2
|
- Upgrade math/eigen3 to 3.3.8;
|
2020-12-12 17:04:37 +00:00 |
|
paje
|
|
|
|
pcmsolver
|
science/pcmsolver: Update 1.2.3 -> 1.3.0
|
2020-12-03 10:49:31 +00:00 |
|
PETSc
|
Rescue PETSc by upgrading to 3.14.1, and thus switch to Python 3.x.
|
2020-12-16 16:19:30 +00:00 |
|
plumed
|
|
|
|
pnetcdf
|
|
|
|
pulseview
|
|
|
|
py-abipy
|
|
|
|
py-asdf
|
Move devel/py-semantic_version to devel/py-semantic-version
|
2020-12-05 13:47:27 +00:00 |
|
py-ase
|
|
|
|
py-avogadrolibs
|
Mark BROKEN
|
2020-12-25 09:16:26 +00:00 |
|
py-cdo
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-chainer
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-chainer-chemistry
|
|
|
|
py-chempy
|
science/py-chempy: Update 0.7.12 -> 0.8.1
|
2020-12-06 22:32:36 +00:00 |
|
py-coards
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-DendroPy
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-dlib
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-eccodes
|
Add py-eccodes 1.0.0 (copied from py-eccodes-python)
|
2020-12-19 20:04:12 +00:00 |
|
py-geolinks
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-geomet
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-geometer
|
|
|
|
py-geometric
|
|
|
|
py-gpaw
|
Relax hardcoded paths to fix build with Python 3.8.7
|
2020-12-24 13:46:01 +00:00 |
|
py-GPy
|
scipy 1.5.4 is only compatible with python 3.6+
|
2020-12-24 09:03:39 +00:00 |
|
py-GPyOpt
|
scipy 1.5.4 is only compatible with python 3.6+
|
2020-12-24 09:03:39 +00:00 |
|
py-gsd
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-h5json
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-h5py
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-jupyter_jsmol
|
Adding jupyter-jsmol, a JSmol viewer widget for Jupyter Notebooks and
|
2020-12-22 11:48:07 +00:00 |
|
py-kim-query
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-kinematics
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-kliff
|
science/py-kliff: Update 0.1.6 -> 0.1.7
|
2020-12-23 00:56:10 +00:00 |
|
py-liac-arff
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-lifelines
|
|
|
|
py-MDAnalysis
|
|
|
|
py-MDAnalysisTests
|
|
|
|
py-mdp
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-mmtf-python
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-molmod
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-moltemplate
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-netCDF4
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-netcdf-flattener
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-obspy
|
|
|
|
py-oddt
|
|
|
|
py-OpenFermion
|
|
|
|
py-openpiv
|
|
|
|
py-paida
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-paramz
|
scipy 1.5.4 is only compatible with python 3.6+
|
2020-12-24 09:03:39 +00:00 |
|
py-phono3py
|
|
|
|
py-phonopy
|
|
|
|
py-pupynere
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-pyaixi
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-pycsw
|
Update to 2.6.0
|
2020-12-19 20:10:44 +00:00 |
|
py-pydicom
|
- Update to 2.1.2
|
2020-12-12 00:54:58 +00:00 |
|
py-PyFR
|
|
|
|
py-pygeodesy
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-pygeometa
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-pygmo2
|
|
|
|
py-pymatgen
|
|
|
|
py-pymol
|
science/py-pymol: switch to PYTHON_EXT_SUFFIX
|
2020-12-24 13:37:40 +00:00 |
|
py-pyosf
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-pysal
|
scipy 1.5.4 is only compatible with python 3.6+
|
2020-12-24 09:03:39 +00:00 |
|
py-pyteomics
|
|
|
|
py-qcelemental
|
|
|
|
py-qcengine
|
|
|
|
py-qspin
|
scipy 1.5.4 is only compatible with python 3.6+
|
2020-12-24 09:03:39 +00:00 |
|
py-quantities
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-rmf
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-rmsd
|
scipy 1.5.4 is only compatible with python 3.6+
|
2020-12-24 09:03:39 +00:00 |
|
py-ruffus
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-scikit-fuzzy
|
|
|
|
py-scikit-learn
|
|
|
|
py-scikit-optimize
|
|
|
|
py-scikit-sparse
|
Relax hardcoded paths to fix build with Python 3.8.7
|
2020-12-24 13:46:01 +00:00 |
|
py-scimath
|
|
|
|
py-scipy
|
science/py-scipy: Remove the recently added USES=blaslapack:openblas because LIB_DEPENDS=libblas.so:math/blas provides blas
|
2020-12-25 05:41:53 +00:00 |
|
py-scoria
|
scipy 1.5.4 is only compatible with python 3.6+
|
2020-12-24 09:03:39 +00:00 |
|
py-segyio
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-SimpleSpectral
|
|
|
|
py-spglib
|
Drop python 2.7 support from a few ports
|
2020-12-28 23:02:12 +00:00 |
|
py-tensorflow
|
|
|
|
py-veusz
|
Update PyQt5 to 5.15.2, sip to 5.5.0, py-qtbuilder to 1.6.0 and py-qt5-sip to 12.8.1
|
2020-12-15 17:56:00 +00:00 |
|
pybrain
|
scipy 1.5.4 is only compatible with python 3.6+
|
2020-12-24 09:03:39 +00:00 |
|
pynn
|
- Update to 0.9.6
|
2020-12-31 08:19:47 +00:00 |
|
qbox
|
science/qbox: Update 1.72.2 -> 1.72.3
|
2020-12-15 06:01:05 +00:00 |
|
qcl
|
|
|
|
qiskit-aer
|
|
|
|
qmcpack
|
|
|
|
quantum-espresso
|
science/quantum-espresso: Update 6.6 -> 6.7.0
|
2020-12-03 20:51:28 +00:00 |
|
quantum-espresso-pseudopotentials
|
|
|
|
qwalk
|
|
|
|
R-cran-AMORE
|
|
|
|
R-cran-bayesm
|
|
|
|
R-cran-cmprsk
|
|
|
|
R-cran-DCluster
|
|
|
|
R-cran-e1071
|
|
|
|
R-cran-eco
|
|
|
|
R-cran-Epi
|
|
|
|
R-cran-epicalc
|
|
|
|
R-cran-etm
|
|
|
|
R-cran-FAdist
|
|
|
|
R-cran-fastICA
|
|
|
|
R-cran-kernlab
|
|
|
|
R-cran-snow
|
|
|
|
R-cran-som
|
|
|
|
R-cran-udunits2
|
|
|
|
rdkit
|
science/rdkit: Update 2018.09.3 -> 2020.09.3
|
2020-12-13 22:00:58 +00:00 |
|
rmf
|
|
|
|
rubygem-ai4r
|
|
|
|
rubygem-cdo
|
|
|
|
rubygem-rgeo
|
|
|
|
rubygem-rgeo-geojson
|
|
|
|
rubygem-rgeo-proj4
|
|
|
|
rubygem-rgeo-shapefile
|
|
|
|
rubygem-ruby-dcl
|
|
|
|
rubygem-ruby-netcdf
|
|
|
|
scidavis
|
Update Qt/PySide2 to 5.15.2 / PyQt to 5.15.1 / SIP to 5.4.0
|
2020-12-08 20:03:07 +00:00 |
|
segyio
|
science/segyio: Update 1.9.4 -> 1.9.5
|
2020-12-17 20:35:23 +00:00 |
|
siesta
|
|
|
|
sigrok-cli
|
|
|
|
sigrok-firmware
|
|
|
|
sigrok-firmware-fx2lafw
|
|
|
|
sigrok-firmware-utils
|
|
|
|
silo
|
|
|
|
simbody
|
|
|
|
simgrid
|
|
|
|
simint
|
|
|
|
simlib
|
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
|
2021-01-02 01:46:08 +00:00 |
|
simsmith
|
|
|
|
smoldyn
|
science/smoldyn: Update 2.62 -> 2.63
|
2020-12-20 06:45:09 +00:00 |
|
sparta
|
|
|
|
spglib
|
|
|
|
step
|
- Upgrade math/eigen3 to 3.3.8;
|
2020-12-12 17:04:37 +00:00 |
|
svmlight
|
|
|
|
szip
|
|
|
|
teem
|
|
|
|
tfel
|
Upgrade to 3.4.0
|
2020-12-13 14:48:11 +00:00 |
|
tfel-edf
|
Fix for GCC_DEFAULT=10.
|
2020-12-21 16:37:23 +00:00 |
|
tinker
|
|
|
|
udunits
|
|
|
|
v_sim
|
|
|
|
vipster
|
science/vipster: Update 1.18b.20200514 -> 1.19.1b-14
|
2020-12-22 11:06:15 +00:00 |
|
vmd
|
|
|
|
voro++
|
|
|
|
votca
|
science/votca: Update 1.6.2 -> 1.6.3
|
2020-12-18 05:40:58 +00:00 |
|
wannier90
|
science/wannier90: Rename the shared library libwannier90.so -> libwannier.so to match the static library name that it creates
|
2021-01-02 00:39:14 +00:00 |
|
wwplot
|
|
|
|
wxmacmolplt
|
|
|
|
xcrysden
|
science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with
|
2020-12-26 11:48:36 +00:00 |
|
xdrawchem
|
|
|
|
xfce4-equake-plugin
|
|
|
|
xtb
|
|
|
|
yoda
|
science/yoda: Update 1.8.4 -> 1.8.5
|
2020-12-06 20:30:15 +00:00 |
|
Makefile
|
Remove expired ports not depending on Python 2.7:
|
2020-12-31 15:07:01 +00:00 |
