Jason W. Bacon 3c68bea700 MFH: r530250 ... kallisto: Patch for build with GCC Fixes broken build on GCC-based platforms PR: ports/245240 Submitted by: pkubaj Approved by: portmgr (fix build blanket)		2020-04-02 13:41:03 +00:00
..
abyss	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
artemis
avida
babel
bamtools
bcftools
bedtools
biococoa	Return theraven's ports to the pool after safekeeping his commit bit.	2020-03-05 20:49:05 +00:00
bolt-lmm
bowtie
bowtie2	Update devel/tbb to 2020.2 and bump dependent port's revisions	2020-04-01 14:14:51 +00:00
bwa
canu	biology/canu: Upgrade to 2.0	2020-03-20 18:14:23 +00:00
cd-hit
cdbfasta
checkm
clustal-omega
clustalw
consed
cufflinks	biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89	2020-03-31 06:42:22 +00:00
cytoscape
ddocent
diamond	biology/diamond: Update to version 0.9.31.2	2020-03-21 22:11:25 +00:00
dsr-pdb
emboss
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastqc
fasttree
fastx-toolkit
figtree
fluctuate
freebayes
garlic
gatk	biology/gatk: Update 4.1.4.1 -> 4.1.5.0	2020-03-04 08:47:55 +00:00
gemma
gff2ps
gmap
gperiodic
graphlan	Deprecate a few ports	2020-02-23 15:25:53 +00:00
grappa
groopm	Deprecate a few ports	2020-02-23 15:25:53 +00:00
haplohseq	Deprecate some ports using deprecated version of python	2020-03-08 17:01:46 +00:00
hhsuite	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
hisat2
hmmer
htslib
hyphy	biology/hyphy: Update to version 2.5.8	2020-03-28 12:27:11 +00:00
igv	Deprecate java/openjfx8-devel consumers	2020-03-19 09:33:13 +00:00
infernal
iolib
iqtree
jalview
jellyfish	biology/jellyfish: Patch for clang 10	2020-03-07 19:25:54 +00:00
kallisto	MFH: r530250	2020-04-02 13:41:03 +00:00
lagan
lamarc
libbigwig
libgtextutils
libsbml
linux-foldingathome	Update WWW	2020-03-30 13:51:31 +00:00
mafft
mapm3
migrate
minimap2
molden
mopac
mothur
mrbayes	biology/mrbayes: Update to version 3.2.7	2020-02-29 23:24:39 +00:00
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-toolkit
ngs-sdk	biology/ngs-sdk: Update 2.10.2 -> 2.10.4	2020-03-07 19:58:39 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbcopper	Mark BROKEN: fails to build	2020-03-10 14:17:19 +00:00
pbseqan
pear-merger
phrap
phred
phylip
phyml
plinkseq
primer3
prodigal
prodigy-lig
protomol
psi88
py-biom-format	Deprecate a few ports	2020-02-23 15:25:53 +00:00
py-biopython
py-bx-python
py-cutadapt
py-dnaio
py-fastTSNE	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
py-Genesis-PyAPI
py-gffutils
py-gtfparse
py-loompy
py-macs2
py-multiqc
py-orange3-bioinformatics
py-orange3-single-cell
py-pyfaidx
py-pysam
py-xenaPython
pyfasta
python-nexus
rainbow	Update WWW	2020-03-31 23:18:09 +00:00
recombine
ruby-bio
rubygem-bio
samtools
seaview	biology/seaview: Update version 5.0=>5.0.2	2020-03-22 16:54:04 +00:00
seqan
seqan1
seqan-apps
seqio
seqtk
seqtools
sim4
slclust
smithwaterman
stacks
star
stringtie
t_coffee
tabixpp
tophat	Deprecate some ports using deprecated version of python	2020-03-08 17:01:46 +00:00
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ugene
vcflib
vcftools
velvet
viennarna
vsearch
wise
Makefile	Resurrect biology/linux-foldingathome	2020-03-21 23:03:05 +00:00