cpet/freebsd-ports
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
70,661 Commits 38 Branches 77 Tags 2.5 GiB
cba45139b6
Commit Graph

408 Commits

Author SHA1 Message Date
Mario Sergio Fujikawa Ferreira
365028dd1b add '-f' argument to rm so that the script always work even if a 
file is not there

Submitted by:	Frerich Raabe <frerich.raabe@gmx.de>
 2003-01-23 19:27:43 +00:00
Edwin Groothuis
b7eafb33b6 New Port: biology/act 
PR:		ports/35753
Submitted by:	Camson Huynh <chuynh@biolateral.com.au>
 2003-01-16 14:22:59 +00:00
Kris Kennaway
5da5198ae4 Add missing file 2003-01-14 05:30:42 +00:00
Kris Kennaway
ffd4e64c29 Add some missing files 2003-01-14 03:39:21 +00:00
Tilman Keskinoz
d022ce8307 Update to 3.8 
Approved by:	rmiya@cc.hirosaki-u.ac.jp (maintainer)
 2003-01-08 12:05:57 +00:00
Edwin Groothuis
191d7dac5e update biology/babel to properly output mm3 files. 
PR:		ports/42425
Submitted by:	Glenn Johnson <glennpj@charter.net>
 2003-01-03 08:52:41 +00:00
Ying-Chieh Liao
3220806664 upgrade to 3.7 
PR:		44957
Submitted by:	maintainer
 2003-01-02 03:57:58 +00:00
Ying-Chieh Liao
b5041aa484 add missing include 
PR:		46584
Submitted by:	Ports Fury
 2002-12-29 04:44:13 +00:00
Ying-Chieh Liao
c545891882 fix build on -current 
PR:		46459
Submitted by:	Ports Fury
 2002-12-22 12:51:20 +00:00
Mario Sergio Fujikawa Ferreira
88902156b6 Fix typo: distribfold.org -> distributedfolding.org 
Submitted by:	Matt Mills <alpha@vanity.com>
 2002-12-19 18:33:55 +00:00
Mario Sergio Fujikawa Ferreira
df92c7e01b o Update to 20021105 snapshot 
o Depend on compat4x on OSVERSION >= 500000 since these are 4.5-RELEASE
  binaries
o House a copy under MASTER_SITE_LOCAL: the local copy will be
  versioned, developer has yet to be convinced of the advantages
  of distributing versioned files

Approved by:	portmgr (knu)
 2002-12-19 01:17:07 +00:00
Mario Sergio Fujikawa Ferreira
8a51d4351d Mark BROKEN due to "Unknown problem" 
Submitted by:	maintainer
 2002-11-25 02:11:13 +00:00
Ying-Chieh Liao
5f94a921b1 unbroke by upgrade to 20021018 
drop maintainership

PR:		45466
Submitted by:	old maintainer
 2002-11-20 14:03:25 +00:00
Ying-Chieh Liao
545bf7ae46 add treepuzzle 5.1 
Maximum likelihood phylogeny reconstruction using quartets

PR:		45241
Submitted by:	Jan Lentfer <lentferj@neslonek.bio.tu-darmstadt.de>
 2002-11-20 08:54:10 +00:00
Maho Nakata
ce7f2b93cc 1. add a missing dependency on png and unbreak. 
2. change e-mail address of maho.
 2002-11-19 23:01:49 +00:00
Mario Sergio Fujikawa Ferreira
f0a1969d34 o Rollback PORTCOMMENT modifications while this feature's implementation 
is better studied
o Turn PORTCOMMENT variable in Makefile back into pkg-comment files

Approved by:	kris (portmgr hat),
		portmgr, re (silence)
 2002-11-10 16:48:51 +00:00
Tilman Keskinoz
7599b3caa6 Update WWW 2002-11-07 23:13:11 +00:00
Edwin Groothuis
2e9537a130 Updated to fix problems as stated in PR ports/42915 
PR:		ports/42915
Submitted by:	Tony Maher <tonym@biolateral.com.au>
 2002-11-07 13:45:17 +00:00
Adam Weinberger
c62fe39354 Fix PORTCOMMENTs that were killing INDEX builds. 
105 pointy hats to:	me
Approved by:		pat
 2002-11-07 03:10:58 +00:00
Adam Weinberger
d9611f9375 Use PORTCOMMENT in the Makefile, and whack the pkg-comment. 
Approved by:	pat
 2002-11-06 22:47:41 +00:00
Edwin Groothuis
f4aab86d3c Modify replace RE to match syntax of sed now ("\)" -> ")" 
Noticed by: bento
 2002-11-05 01:44:12 +00:00
Edwin Groothuis
37f2224fa6 PERL -> REINPLACE 
And some ports have USE_PERL5=yes now.
 2002-11-04 05:46:38 +00:00
Edwin Groothuis
6097f03e91 PERL -> REINPLACE 
Noticed on: bento
 2002-11-04 02:35:01 +00:00
Edwin Groothuis
558f2d386c PERL -> REINPLACE 
Noticed on: bento
 2002-11-04 01:56:21 +00:00
Edwin Groothuis
c3eddc377e Port needs perl to build. 
Seen on: bento
 2002-11-04 01:47:57 +00:00
Edwin Groothuis
6cf3dcffa8 Make biology/avida building on -current again 
PR:		ports/44819
Submitted by:	Oliver Lehmann <lehmann@ans-netz.de>
Approved by:	Jeremy Karlson <karlj000@unbc.ca>
 2002-11-03 23:40:02 +00:00
Patrick Li
516d846c10 Add another entry for MASTER_SITES and unbreak with latest version of bison 
PR:		ports/44711
Submitted by:	maintainer
 2002-10-29 22:27:17 +00:00
Tom Hukins
2284d53b36 Update CATEGORIES as per ports/44331. 
While I'm here, remove unnecessary whitespace spotted by portlint.

PR:		ports/44331
Submitted by:	Martin Klaffenboeck <martin.klaffenboeck@gmx.at>
 2002-10-21 10:59:11 +00:00
Mario Sergio Fujikawa Ferreira
ee31677712 o Update to snapshot 20021015 
o Fix an issue with the startup scripts
 2002-10-19 18:19:50 +00:00
Kris Kennaway
9883a05f7e Fix dependency on wxgtk 2002-10-19 09:50:53 +00:00
Akinori MUSHA
744ecfac33 CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' in 
them when using a non-default compiler/linker, so do not use `/' as
delimiter for s///. (I picked `|' instead)
 2002-10-10 12:59:36 +00:00
Mario Sergio Fujikawa Ferreira
72353480ab Connect distribfold to build after moving it from misc category 
Prompted by:	kris,
		Adam Weinberger <adam@vectors.cx>,
		Fernan Aguero <fernan@iib.unsam.edu.ar>,
		others
 2002-10-07 03:07:59 +00:00
Mario Sergio Fujikawa Ferreira
e6797a6f48 o New port distribfold version 0.1: distribfold.org distributed protein 
folding project
o One can start multiple instances of this port. Just install it
  using WITH_NCPU
 2002-10-07 03:07:13 +00:00
Akinori MUSHA
8dc9b4eb8b Use RUBY_MOD*. 2002-10-06 21:08:30 +00:00
Johann Visagie
f4e518bd9b - Unbreak fetching of distfiles. (Needs update as soon as freeze is over.) 
Submitted by:	kris, bento
Approved by:	Implicitly by first rule of ports freeze, I hope!
 2002-09-27 08:58:19 +00:00
Ying-Chieh Liao
460fa2aa9e add forgotten "USE_REINPLACE=yes" 
Submitted by:	maintainer
 2002-09-21 14:56:18 +00:00
Ying-Chieh Liao
6c06a9090d upgrade to 20020426 
PR:		39357
Submitted by:	maintainer
 2002-09-21 06:59:28 +00:00
Kris Kennaway
dc1db85872 BROKEN: Does not fetch 2002-09-20 20:45:20 +00:00
Kris Kennaway
ce1e6ce51e BROKEN: Does not build 2002-09-19 02:45:38 +00:00
Ying-Chieh Liao
47be6d4a10 add primer3 0.9 
Primer3 helps to choose primers for PCR reactions

PR:		35298
Submitted by:	Tony Maher <tonym@biolateral.com.au>
 2002-09-17 15:31:09 +00:00
Dirk Meyer
f593f06ed2 Flip is used to find/translate orfs. 
WWW: ftp://megasun.bch.umontreal.ca/pub/flip/
PR:		35332
Submitted by:	tonym@biolateral.com.au
 2002-09-10 14:04:06 +00:00
Dirk Meyer
ce85742f4f "Wise2 is package that is focused on comparing DNA sequences at 
the level of its conceptual translation, regardless of sequencing
error and introns."
 2002-09-10 13:58:40 +00:00
Maxim Sobolev
4715163d34 Chase new name of wxgtk shared library. 2002-09-09 14:21:08 +00:00
Kris Kennaway
8fa8041fe5 Remove USE_NEWGCC, which is no longer supported or required. 
Submitted by:	Tilman Linneweh <tilman@arved.de>
PR:		ports/40571
 2002-08-31 02:38:29 +00:00
Mario Sergio Fujikawa Ferreira
5dec55380d Deploy USE_GNOMENG infrastructure 
PR:		42187
Submitted by:	Edwin Groothuis <edwin@mavetju.org>
 2002-08-30 12:59:40 +00:00
Hye-Shik Chang
164aad7a64 o Fix examples directory path which is changed in last revision. 
Submitted by:	Glenn Johnson <glennpj@charter.net>
 2002-08-26 05:13:28 +00:00
Hye-Shik Chang
485faf1e84 o Fix RUN_DEPENDS path (PMW -> Pmw) 
o Fix DISTNAME which was broken by previous commit.
o Install example files

PR:		41977
Submitted by:	Glenn Johnson <glennpj@charter.net>
Approved by:	maintainer
 2002-08-25 08:37:53 +00:00
Kris Kennaway
56881e441f Prefer <limits.h> over <values.h> as the latter has been removed from 
-current.

Noticed by:	bento
 2002-08-23 03:36:33 +00:00
Hye-Shik Chang
0aedf7e003 o Remove redundant dependency on py-tkinter. 
o Bump PORTREVISION that I've missed on last commit.

Submitted by:	Glenn Johnson <glennpj@charter.net>
 2002-08-22 04:20:19 +00:00
Hye-Shik Chang
bf0c82e18c Add a dependecy to x11-toolkits/pmw 
PR:		41857
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Approved by:	maintainer
 2002-08-22 03:35:32 +00:00