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upgrade to 20020426

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PR:		39357
Submitted by:	maintainer
This commit is contained in:
Ying-Chieh Liao 2002-09-21 06:59:28 +00:00
parent a2f0cb339a
commit 6c06a9090d
Notes: svn2git 2021-03-31 03:12:20 +00:00 
svn path=/head/; revision=66997
6 changed files with 16 additions and 22 deletions
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4
biology/ncbi-toolkit/Makefile
View File

@ -6,7 +6,7 @@
#
PORTNAME= ncbi-toolkit
PORTVERSION= 2001.12.20
PORTVERSION= 2002.04.26
CATEGORIES= biology
MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
DISTNAME= ncbi
@ -36,7 +36,7 @@ CPIO= cpio --quiet -pdum -R
pre-configure:
@${CP} ${FILESDIR}/${DUMMYMAKE} ${WRKSRC}
@${CP} ${FILESDIR}/freebsd.ncbi.mk ${PLATFORMDIR}
@${PERL} -pi.orig -e 's#NetBSD#FreeBSD#;' -e 's#netbsd#freebsd#' ${BUILDSCRIPT}
@${REINPLACE_CMD} -e 's#NetBSD#FreeBSD#;' -e 's#netbsd#freebsd#' ${BUILDSCRIPT}
post-install:
@${MKDIR} ${DATADIR}

2
biology/ncbi-toolkit/distinfo
View File

@ -1 +1 @@
MD5 (ncbi.tar.gz) = 8038afb3f5502b3b8ade4f221eebe46e
MD5 (ncbi.tar.gz) = 7278c10b227b0298f00a5ed5dde58bc4

19
biology/ncbi-toolkit/files/patch-aa
View File

@ -1,12 +1,12 @@
--- make/makeall.unx.orig Thu Apr 5 09:24:30 2001
+++ make/makeall.unx Tue Sep 18 14:49:24 2001
@@ -851,3 +851,51 @@
--- make/makeall.unx.orig Thu Mar 21 06:01:20 2002
+++ make/makeall.unx Sat Jun 8 20:16:09 2002
@@ -859,3 +859,46 @@
#load $(LDFLAGS) getmuid.c medutil.c \
$(SRC11) $(SRC8) $(SRC7) $(SRC6) $(SRC5) $(SRC3) \
$(SRC2) $(SRC1) $(OTHERLIBS) -lsocket -lnsl
+
+EXE= Nentrez Psequin \
+ asn2fast asn2ff asn2xml asndhuff asntool \
+ asn2ff asn2xml asndhuff asntool \
+ bl2seq blast.REAL blastall blastcl3 blastclust blastpgp \
+ cdscan checksub copymat \
+ ddv dosimple \
@ -21,13 +21,6 @@
+ udv vecscreen
+
+
+LIB= libncbi.a libncbicdr.a libncbimla.a libncbitxc2.a \
+ libnetentr.a libncbiCacc.a libncbicn3d.a libncbimmdb.a \
+ libnetblast.a libvibgif.a libncbiNacc.a libncbidesk.a \
+ libncbiobj.a libnetcli.a libvibnet.a libncbiacc.a \
+ libncbiid1.a libncbitool.a libnetcli_.a libvibrant.a
+
+
+MKDIR= /bin/mkdir -p
+INSTALL_PROGRAM= /usr/bin/install -c
+
@ -37,7 +30,9 @@
+
+linstall: $(LIB)
+ ${MKDIR} ${PREFIX}/lib/ncbi
+ ${INSTALL_PROGRAM} $? ${PREFIX}/lib/ncbi
+ for file in *.a; do \
+ ${INSTALL_PROGRAM} $$file ${PREFIX}/lib/ncbi; \
+ done
+
+iinstall::
+ ${MKDIR} ${PREFIX}/include/ncbi/connect

3
biology/ncbi-toolkit/pkg-descr
View File

@ -16,5 +16,4 @@ From the README:
have found it a useful and stable basis for a number of tools and
applications.
-- Tony Maher <tony.maher@ebioinformatics.com>
FreeBSD bio-porters <bio@freebsd.net>
-- Tony Maher <tonym@biolateral.com.au>

4
biology/ncbi-toolkit/pkg-message
View File

@ -1,8 +1,6 @@
The data files are installed in "%%PREFIX%%/share/ncbi-tookit".
The data files are installed in "%%PREFIX%%/share/ncbi-toolkit".
To use them you need to create a .ncbirc file in your home directory
with the following lines:
[NCBI]
Data=%%PREFIX%%/share/ncbi-toolkit/

6
biology/ncbi-toolkit/pkg-plist
View File

@ -37,12 +37,12 @@
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn19.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn20.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn21.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn22.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/ncbixml.txt
%%PORTDOCS%%share/doc/ncbi-toolkit/sdk.doc
%%PORTDOCS%%share/doc/ncbi-toolkit/sequin.htm
bin/Nentrez
bin/Psequin
bin/asn2fast
bin/asn2ff
bin/asn2xml
bin/asndhuff
@ -87,6 +87,7 @@ bin/testobj
bin/testval
bin/udv
bin/vecscreen
lib/ncbi/libddvlib.a
lib/ncbi/libncbi.a
lib/ncbi/libncbiCacc.a
lib/ncbi/libncbiNacc.a
@ -102,7 +103,6 @@ lib/ncbi/libncbitool.a
lib/ncbi/libncbitxc2.a
lib/ncbi/libnetblast.a
lib/ncbi/libnetcli.a
lib/ncbi/libnetcli_.a
lib/ncbi/libnetentr.a
lib/ncbi/libvibgif.a
lib/ncbi/libvibnet.a
@ -110,6 +110,7 @@ lib/ncbi/libvibrant.a
include/ncbi/connect/ncbi_ansi_ext.h
include/ncbi/connect/ncbi_buffer.h
include/ncbi/connect/ncbi_comm.h
include/ncbi/connect/ncbi_config.h
include/ncbi/connect/ncbi_connection.h
include/ncbi/connect/ncbi_connector.h
include/ncbi/connect/ncbi_connutil.h
@ -117,6 +118,7 @@ include/ncbi/connect/ncbi_core.h
include/ncbi/connect/ncbi_file_connector.h
include/ncbi/connect/ncbi_heapmgr.h
include/ncbi/connect/ncbi_http_connector.h
include/ncbi/connect/ncbi_memory_connector.h
include/ncbi/connect/ncbi_priv.h
include/ncbi/connect/ncbi_sendmail.h
include/ncbi/connect/ncbi_server_info.h